BAC Information

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BAC

Clone NameB6Ng01-318M13
Chromosome2 (Build37)
Map Location 6,776,470 - 6,896,709
singlet/doubletdoublet
Overlap geneCugbp2
Upstream geneNudt5, Sec61a2, Dhtkd1, Upf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M13.bB6Ng01-318M13.g
ACCGA108583GA108584
length1,128944
definitionB6Ng01-318M13.b B6Ng01-318M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,776,470 - 6,777,610)(6,896,091 - 6,896,709)
sequence
gaattcttctctaactttgctataaactcttatagccactcagtgttaaa
gaaatgatagaaacttatggtttcctagaaacgcaggatccaactaaaag
cttatccacttgaggaaaagctacgccccagaaaggatcaaaggggagcg
taatgacacctgatgtgaaacaggtcccatacatgagctgtgtagataaa
ccattttgtttagatttcacttaacctactgactaaccgatggctcattt
gaggagattaagaatggttctaactctagaaaagatactgtgtaaaactg
ccaactaatggagaggatagggaccaaacactgcttgtgagcttttgcta
atccataagctacagagctacaggtaacctccacctgccaaaaaaatcaa
ctgttcatctaaatcaaatgcaaatattaacgaggtggaagaacatctct
cagagtgaaattccagcatctagtaaattcttaaaagaaaactcttgata
aaatacacaaccataagtttggaaaaagaattcacatttaaggtttgttt
tttaatctcaaataggtaagcatctacctcagacacatagttcttgacat
taatatggtccccttttccactgacacagctataccactattgctttaca
cactaaaagtcgtgtcttgctatgaaagaaaataaaaaggcatttgacag
aaaagaattttttaaaaaagacacacaagagtgttggttacaactatgaa
attgtacttagttaaatatagaaatcctggcacaaaacgtctaggaaatc
taggacactgaaaaaaaaaaatcaatctaagaataataagaatagaggga
gggagaagaatcccaagtgagagacacagaaaatattttcaacaaagcca
cagaagaaaatttccctaaccctaacagagatgccagcaaagagcataca
gacaccaaacagactggaccagaagtcctcttgcaccacaatatcaaaaa
accctaacatacaaatataaatatattggagctgcaggaaaacccacttc
ctcaatggaagtgcaaagcagaatgcctcagacgatgtggctgcaacaat
aaggacccaactactaccccataaaaaa

gaattccaatgtagggatcgctttaaacatatacacacaatctgaagcac
tcaccaataagaaaataaatcttttaattgggtgaaatattggatgaaga
tagacaaagatacatatgcacattacaagtttctcaatattattatttaa
ttaaatgtacagtgggctactatcacttgactatttcatacatggctgaa
attaattccattccaaagcattctgaagggaggcattggagtgctatcgg
ctcctgtcacattacgggtaaggagtaaaatgctgtagtcacttagaaac
agttggatgtttcttagaaagctaaacacagatacgccatttgctggtgt
gtttattcaaatctacctgtggaaaaatcttatttcccctgagtgcacac
gtaggttcctgattctccaaggaaataatgcaataacatgaatgaaaata
atcatagcagcttgatgtgtaatagtaagagatagaaataactctcatgc
catcaagaggagaaggaactaacaacttgcactatattcagacaatgggg
tggtgcccagaaagtgagggtgcactgtagaagaatttcaagagtgactc
tgagtaagaaaaaccagaccaaaacaaaatgtatatacaccattagactc
catttagatgaagttctagacctggaagctaagccaaagagacaggaaat
gaccagtaacaggggagagatgagagaagggactatgttggagcagaggg
aaaaaggtttaagaaaccatacagttcaccagggatggcaacaggagctt
caggcagttgctcacagtatgtctacagtaaggagagtatgatgataccc
atgctttcctttgatgttgggacctttcatctataggatgctactgccca
cattcacgtcaaacctctctggaaagtctcacaaacatgcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_6776470_6777610
seq2: B6Ng01-318M13.b_50_1177

seq1  GAATTCTTCTCTAACTTTGCTATAAACTCTTATAGCCACTCAGTGTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCTAACTTTGCTATAAACTCTTATAGCCACTCAGTGTTAAA  50

seq1  GAAATGATAGAAACTTATGGTTTCCTAGAAACGCAGGATCCAACTAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGATAGAAACTTATGGTTTCCTAGAAACGCAGGATCCAACTAAAAG  100

seq1  CTTATCCACTTGAGGAAAAGCTACGCCCCAGAAAGGATCAAAGGGGAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCACTTGAGGAAAAGCTACGCCCCAGAAAGGATCAAAGGGGAGCG  150

seq1  TAATGACACCTGATGTGAAACAGGTCCCATACATGAGCTGTGTAGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACACCTGATGTGAAACAGGTCCCATACATGAGCTGTGTAGATAAA  200

seq1  CCATTTTGTTTAGATTTCACTTAACCTACTGACTAACCGATGGCTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTTTAGATTTCACTTAACCTACTGACTAACCGATGGCTCATTT  250

seq1  GAGGAGATTAAGAATGGTTCTAACTCTAGAAAAGATACTGTGTAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATTAAGAATGGTTCTAACTCTAGAAAAGATACTGTGTAAAACTG  300

seq1  CCAACTAATGGAGAGGATAGGGACCAAACACTGCTTGTGAGCTTTTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTAATGGAGAGGATAGGGACCAAACACTGCTTGTGAGCTTTTGCTA  350

seq1  ATCCATAAGCTACAGAGCTACAGGTAACCTCCACCTGCCAAAAAAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAGCTACAGAGCTACAGGTAACCTCCACCTGCCAAAAAAATCAA  400

seq1  CTGTTCATCTAAATCAAATGCAAATATTAACGAGGTGGAAGAACATCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCTAAATCAAATGCAAATATTAACGAGGTGGAAGAACATCTCT  450

seq1  CAGAGTGAAATTCCAGCATCTAGTAAATTCTTAAAAGAAAACTCTTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAAATTCCAGCATCTAGTAAATTCTTAAAAGAAAACTCTTGATA  500

seq1  AAATACACAACCATAAGTTTGGAAAAAGAATTCACATTTAAGGTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACAACCATAAGTTTGGAAAAAGAATTCACATTTAAGGTTTGTTT  550

seq1  TTTAATCTCAAATAGGTAAGCATCTACCTCAGACACATAGTTCTTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCAAATAGGTAAGCATCTACCTCAGACACATAGTTCTTGACAT  600

seq1  TAATATGGTCCCCTTTTCCACTGACACAGCTATACCACTATTGCTTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGTCCCCTTTTCCACTGACACAGCTATACCACTATTGCTTTACA  650

seq1  CACTAAAAGTCGTGTCTTGCTATGAAAGAAAATAAAAAGGCATTTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAGTCGTGTCTTGCTATGAAAGAAAATAAAAAGGCATTTGACAG  700

seq1  AAAAGAATTTTTTAAAAAAGACACACAAGAGTGTTGGTTACAACTATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTTTTTAAAAAAGACACACAAGAGTGTTGGTTACAACTATGAA  750

seq1  ATTGTACTTAGTTAAATATAGAAATCCTGGCACAAAACGTCTAGGAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTTAGTTAAATATAGAAATCCTGGCACAAAACGTCTAGGAAATC  800

seq1  TAGGACACTG-AAAAAAAAAATCAATCTAAGAATAATAAGAATAGAGGGA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGGACACTGAAAAAAAAAAATCAATCTAAGAATAATAAGAATAGAGGGA  850

seq1  GGGAGAAGAATCCCAAGTGAGAGACACAGAAAATATTTTCAACAAAGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAATCCCAAGTGAGAGACACAGAAAATATTTTCAACAAAGCCA  900

seq1  CAGAAGAAAATTTCCCTAA-CCTAACAGAGATGCCAGCAAAGAAGCATAC  948
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  CAGAAGAAAATTTCCCTAACCCTAACAGAGATGCCAGCAAAG-AGCATAC  949

seq1  AGAACACCAAACAGACTGGACCAGAAAGTCCTCTTGGCACACAATAATCA  998
      || ||||||||||||||||||||| |||||||||||   |||||| ||| 
seq2  AG-ACACCAAACAGACTGGACCAG-AAGTCCTCTTGCACCACAAT-ATC-  995

seq1  AAAAAACCCTAAACATACAAAATATAAATAATATTGAAGCTGCAAGGAAA  1048
      |||||||||| ||||||| |||||||||| |||||| |||||||  | ||
seq2  AAAAAACCCT-AACATAC-AAATATAAAT-ATATTGGAGCTGCA--GGAA  1040

seq1  AACCCAACTTCTCAATGG-AGTGCAAAAGCAGAAGGGCTCAGACAGATGT  1097
      ||||||  | |||||||| ||||| ||||||||| | ||||||| |||||
seq2  AACCCACTTCCTCAATGGAAGTGC-AAAGCAGAATGCCTCAGAC-GATGT  1088

seq1  -GCTGCAAACAATAAGGGACCACAAACTACTACACCCATAAAAAA  1141
       ||||| ||||||||||  ||   ||||||||| |||||||||||
seq2  GGCTGC-AACAATAAGGACCC---AACTACTAC-CCCATAAAAAA  1128


seq1: chr2_6896091_6896709
seq2: B6Ng01-318M13.g_64_682 (reverse)

seq1  GTCTGGTTTTTCTTACTCAGAGTCACTCTTGAAATTCTTCTACAGTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTTTTTCTTACTCAGAGTCACTCTTGAAATTCTTCTACAGTGCAC  50

seq1  CCTCACTTTCTGGGCACCACCCCATTGTCTGAATATAGTGCAAGTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTTCTGGGCACCACCCCATTGTCTGAATATAGTGCAAGTTGTTA  100

seq1  GTTCCTTCTCCTCTTGATGGCATGAGAGTTATTTCTATCTCTTACTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCTCCTCTTGATGGCATGAGAGTTATTTCTATCTCTTACTATTA  150

seq1  CACATCAAGCTGCTATGATTATTTTCATTCATGTTATTGCATTATTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAAGCTGCTATGATTATTTTCATTCATGTTATTGCATTATTTCCT  200

seq1  TGGAGAATCAGGAACCTACGTGTGCACTCAGGGGAAATAAGATTTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATCAGGAACCTACGTGTGCACTCAGGGGAAATAAGATTTTTCCA  250

seq1  CAGGTAGATTTGAATAAACACACCAGCAAATGGCGTATCTGTGTTTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGATTTGAATAAACACACCAGCAAATGGCGTATCTGTGTTTAGCT  300

seq1  TTCTAAGAAACATCCAACTGTTTCTAAGTGACTACAGCATTTTACTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGAAACATCCAACTGTTTCTAAGTGACTACAGCATTTTACTCCTT  350

seq1  ACCCGTAATGTGACAGGAGCCGATAGCACTCCAATGCCTCCCTTCAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTAATGTGACAGGAGCCGATAGCACTCCAATGCCTCCCTTCAGAAT  400

seq1  GCTTTGGAATGGAATTAATTTCAGCCATGTATGAAATAGTCAAGTGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAATGGAATTAATTTCAGCCATGTATGAAATAGTCAAGTGATAG  450

seq1  TAGCCCACTGTACATTTAATTAAATAATAATATTGAGAAACTTGTAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCACTGTACATTTAATTAAATAATAATATTGAGAAACTTGTAATGT  500

seq1  GCATATGTATCTTTGTCTATCTTCATCCAATATTTCACCCAATTAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTATCTTTGTCTATCTTCATCCAATATTTCACCCAATTAAAAGA  550

seq1  TTTATTTTCTTATTGGTGAGTGCTTCAGATTGTGTGTATATGTTTAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTTATTGGTGAGTGCTTCAGATTGTGTGTATATGTTTAAAGC  600

seq1  GATCCCTACATTGGAATTC  619
      |||||||||||||||||||
seq2  GATCCCTACATTGGAATTC  619


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