BAC Information

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BAC

Clone NameB6Ng01-319M11
Chromosome2 (Build37)
Map Location 123,082,465 - 123,083,587
singlet/doubletsinglet
Overlap genenone
Upstream geneSord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M11.bB6Ng01-319M11.g
ACCGA109325GA109326
length1,107777
definitionB6Ng01-319M11.b B6Ng01-319M11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcgtgaaatgcaaacacatctcctttactattgttcagtcttg
tttccatttttaaaattaccttagtgacagaattctctcccccttcaaat
cttgtcttgttatgaaaatgttatcatactgtttcagggactaatggcta
caagaaagtcaccccagagcatgacatgacttcaattcactgaagtgtct
gctcttcttggggagtcagcttatcctgccctgtcctctttatccagcta
gtgaaggtcttctgggacatgtgtctttgtggataaactacttagctaac
taggtactgtagataacttcccatatgctgatttaaacctcccaggtgta
ttatattttcaaatgcatttgatattcatatgagtgtcctttattgaatt
gggttattgcccatggtgtgcctgtgtgccatagacaaatatcaattgct
taatctggttaatgaccatacatctatatagttgccaaacctaaaatttg
tgcttgattaacattggttaacattgattgccacctaaactgaatctaga
cccatccagaagacaaacctctctgtatttctctgatggagattctagat
taagttaaccgagttaagaaaatccattaaaatgtgggtatcactattct
atggtcttgggttctcagagaaacgaaaaggagaaaaggagttgagcatg
agcaattattgctctccagctgtatactatgtcctgactgtggatgtgat
atgactgactgcttcatgatcctgccttcttaccttcctttctgtgaatg
attgtgccatcaaaaggaagggaaacaggaataagagagaggagatggag
atgaagatgctgaactaagttttcttaacatcaccacaccaactaatcct
atcagacactacttcttttaaaatgagaggcttattataaggtctacgat
aagaacagctaagacccaaagcaggcaatcatatgttcccattaatactt
tattggcccataacagaggtagctgatgatgactcctgaaagtgagcatc
tcaaatacttttttgcttgttctactcagccttataccttgcaattcagc
cttgact
gaattctttgtttagctctgtacaccatttttaataggtttatttgattt
tctggagtccagcttcttgagttctttgtaaatattagtcccgtatcaga
tttaggtttggtaaagatcttttcttaatgtgttggtggcctttttgtct
tattgacagggtcttttgccttacagaagctttgcaattttatacggtcc
catttgtcgattccaaaatgtggatacttcattccttcctagaatgagga
acaaaatacccatggaaggagttacagagacaatgtttggagaaaagcct
aaaggaacaaccattcagagactgccccacttggggatccaccccataaa
caacaaccaaatccagacactaggctgatgccaacaagagcctgctgaca
ggagcctgatatagctgtctccttcaaggctctgccagttcctggtaaat
acagaagtagatgctcacagtcatccattgaacggagcacaaagtcccca
atgaaggagctagagtaatacccagggagctgaaagggactggagcctca
tagaaggaacatcaatatgaactaactagtacccccagagctccttagaa
catatcaacaatcaaagaaaacatatggtagaacttgtggctctagctat
atatgtagcagaggctggcctagtcagtcatctatgggaggagaagcact
tggttctctgaaggttctatgccccagtttaggggaaaaccaggaccagg
aatgggagtgggtggattgggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123082465_123083587
seq2: B6Ng01-319M11.b_50_1156 (reverse)

seq1  AGTCAAGACTGAATTTCAAGGTATAAGCTTGGAGGTAGGAACCAAAGCAA  50
      ||||||| ||||||| |||||||||||  ||   ||| ||||  ||||||
seq2  AGTCAAGGCTGAATTGCAAGGTATAAGGCTG--AGTA-GAAC--AAGCAA  45

seq1  AAAAGTTATTGAGGAATGCTCACTTTCA-GAGTCATCATCAGCTACCCTT  99
      ||||||  |||||  ||||||||||||| ||||||||||||||||||   
seq2  AAAAGTATTTGAG--ATGCTCACTTTCAGGAGTCATCATCAGCTACC---  90

seq1  CCTGTATGGGGCCAATAAAGTATTTAATGGGAACATTATGATTGCCCTGC  149
       ||||   |||||||||||||| |||||||||||| |||||||| |||||
seq2  TCTGTTATGGGCCAATAAAGTA-TTAATGGGAACA-TATGATTG-CCTGC  137

seq1  TTTGGGTCCTTAGCTTGTTCTTTATTCGTAGACCTTATAATAAGCCTCTT  199
      ||||||| |||||| |||||||   ||||||||||||||||||||||| |
seq2  TTTGGGT-CTTAGC-TGTTCTT--ATCGTAGACCTTATAATAAGCCTC-T  182

seq1  CATTTTAAAAGAAGTAGTGTCTGATAGGATTAGTTGGTGTGGTGATGTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAAGAAGTAGTGTCTGATAGGATTAGTTGGTGTGGTGATGTTA  232

seq1  AGAAAACTTAGTTCAGCATCTTCATCTCCATCTCCTCTCTCTTATTCCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTAGTTCAGCATCTTCATCTCCATCTCCTCTCTCTTATTCCTG  282

seq1  -TTCCCTTCCTTTTGATGGCACAATCATTCACAGAAAGGAAGGTAAGAAG  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCTTTTGATGGCACAATCATTCACAGAAAGGAAGGTAAGAAG  332

seq1  GCAGGATCATGAAGCAGTCAGTCATATCACATCCACAGTCAGGACATAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCATGAAGCAGTCAGTCATATCACATCCACAGTCAGGACATAGT  382

seq1  ATACAGCTGGAGAGCAATAATTGCTCATGCTCAACTCCTTTTCTCCTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTGGAGAGCAATAATTGCTCATGCTCAACTCCTTTTCTCCTTTT  432

seq1  CGTTTCTCTGAGAACCCAAGACCATAGAATAGTGATACCCACATTTTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTCTGAGAACCCAAGACCATAGAATAGTGATACCCACATTTTAAT  482

seq1  GGATTTTCTTAACTCGGTTAACTTAATCTAGAATCTCCATCAGAGAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTTAACTCGGTTAACTTAATCTAGAATCTCCATCAGAGAAATA  532

seq1  CAGAGAGGTTTGTCTTCTGGATGGGTCTAGATTCAGTTTAGGTGGCAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTTTGTCTTCTGGATGGGTCTAGATTCAGTTTAGGTGGCAATC  582

seq1  AATGTTAACCAATGTTAATCAAGCACAAATTTTAGGTTTGGCAACTATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAACCAATGTTAATCAAGCACAAATTTTAGGTTTGGCAACTATAT  632

seq1  AGATGTATGGTCATTAACCAGATTAAGCAATTGATATTTGTCTATGGCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATGGTCATTAACCAGATTAAGCAATTGATATTTGTCTATGGCAC  682

seq1  ACAGGCACACCATGGGCAATAACCCAATTCAATAAAGGACACTCATATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACACCATGGGCAATAACCCAATTCAATAAAGGACACTCATATGA  732

seq1  ATATCAAATGCATTTGAAAATATAATACACCTGGGAGGTTTAAATCAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAATGCATTTGAAAATATAATACACCTGGGAGGTTTAAATCAGCA  782

seq1  TATGGGAAGTTATCTACAGTACCTAGTTAGCTAAGTAGTTTATCCACAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGTTATCTACAGTACCTAGTTAGCTAAGTAGTTTATCCACAAA  832

seq1  GACACATGTCCCAGAAGACCTTCACTAGCTGGATAAAGAGGACAGGGCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTCCCAGAAGACCTTCACTAGCTGGATAAAGAGGACAGGGCAG  882

seq1  GATAAGCTGACTCCCCAAGAAGAGCAGACACTTCAGTGAATTGAAGTCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGCTGACTCCCCAAGAAGAGCAGACACTTCAGTGAATTGAAGTCAT  932

seq1  GTCATGCTCTGGGGTGACTTTCTTGTAGCCATTAGTCCCTGAAACAGTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCTCTGGGGTGACTTTCTTGTAGCCATTAGTCCCTGAAACAGTAT  982

seq1  GATAACATTTTCATAACAAGACAAGATTTGAAGGGGGAGAGAATTCTGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATTTTCATAACAAGACAAGATTTGAAGGGGGAGAGAATTCTGTC  1032

seq1  ACTAAGGTAATTTTAAAAATGGAAACAAGACTGAACAATAGTAAAGGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTAATTTTAAAAATGGAAACAAGACTGAACAATAGTAAAGGAGA  1082

seq1  TGTGTTTGCATTTCACGAGGAATTC  1123
      |||||||||||||||||||||||||
seq2  TGTGTTTGCATTTCACGAGGAATTC  1107