BAC Information

Click to search

BAC

Clone NameB6Ng01-320A06
Chromosome2 (Build37)
Map Location 25,535,865 - 25,536,987
singlet/doubletsinglet
Overlap geneLOC620709
Upstream geneCacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5
Downstream geneLcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320A06.bB6Ng01-320A06.g
ACCGA109503GA109504
length1,2201,131
definitionB6Ng01-320A06.b B6Ng01-320A06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttggtcctcttgcctccattccccaacttctgacattttgggca
tccgccaccatgttgtttgactgcaggagaggcaacggaacgtcagtggc
accgacgcggccgggctgacactgcagaagtggcagagcagccagcggct
tcacagttgaccgtgactgctgctgggcactaggcaggccaagctacaaa
agcatcagagcttctagctgcacggacacctgtagagcagccatgctctt
aggtcactacctagctgcagcggcaggggcagcttcctttcccaatggcc
acagtgaccatagtaacaggaggaggccctgaactatttgagggctcggg
atagtcagaaacaagagaagagatggaagtcaaggcaggatggagggttg
aagctgaaggacagaaacctgtaaagagtcagagaagagttacctaagtc
tatgggctctcctaggagagctctggaaagccttacattcattttccttc
tctttccacaaagcatccccagattggggggggtggtgctgcttttctga
aacccattctctctctcatgcctagggtctaaactacctctactcagggt
ccaaagaccaaaagcatctatgagaatgatcttcgctcttctagatttta
gcattattctaaaaacacacacagaaagcagtctaccattaccttgtccc
tttttacagggtttattcgccgttggcccaaatcttctttatttactttt
atgcacactcctttccccatggtgtccttcattgtacccttcatacttga
gctccaacattgatgtgccatctgaccaagacagctcagtcagtcaacag
ggtctcaaggggcagagcgaagtttgaaaagaaaaaaagacgattagaca
acattataacatggctccagccagttctgaagctaaggcggatttatttt
tctctagtctgcttttataccattctaagtacatgcaagaataaagtcag
ttctaggtcaaggtacaaggcaataaacaaaatcctggtggaattcagaa
gaattctcagatgatcatgatctgagctactccttgtcttagctcatgtc
aaatctgcttgaacctaccttctgtgttctagccatgggcaattcctaca
actcctagaagtgcgccaaggagcctctctcccaaggcaacaccttgtct
ctcacaatatggttgtctca
gaattccccatccctgtgtgtccagatgcctggggggtcttagcctcgat
ttctgggctcttttgtgggttcagaaggaaggatacctggttagtagtgt
tcttcctccaataggatagccctacttggtctttagtcaccccaggctga
gtgggacaaacactccatctgtcaactagcaaccaacaactgcttcttgc
tggcacaatgtaggggacctggggacagagcctgagacctctgctgaggt
tggataaggtcttatttgtttccatcctaatggccaaccccagttttaca
cctggttggcacgatggtcctactttccttgctacccctagatcttccat
ttcctttctagctctgggtatattggattatcgggtactgggcactaact
tcaaagactacgctgtcgtcttcacacagctggaatttggggatgaggtc
ttcaacacagtgtcgttgtacagtaagtggggtctggcaagattgctcac
cctgaggttggctagggattggggtaaagaaaagggcagggatcacagcc
acactctggtcgcctctcagaggctgctccttcctgcccaggtcggacag
agatggctagccacgaagccatgcagctattcaccaaatggagccagggg
ctgggcttcttgtctcaacagcaggctcagctgcagaaggaccgtgagtg
ttgctagtatgggcctcggagaaacacaggaagctctggtgcacataagg
gctgaccagggtggtggtggcacatcccctgctttccttgatttgtgcct
tgtcacagtcaggcctgtctggacagtttctttcaacagaggcttgtggg
tgggatcctgggaactgctacagccccattctcacaactggctcgcttct
tctacagtcacttgtgcacacaagatcctccaggtaggccaccttttctg
gtgcatcactctcagctcccagggggagtaggagaaggcttggggctctg
ggtggaccatctttcaaagcctgttgtagccatgctcctgccactggaat
gtgacggaggtgggggaacaaagcctattaccaggctcaaacccaaacca
cctgacttggtttcagtgatgcccacaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_25535865_25536987
seq2: B6Ng01-320A06.g_65_1195

seq1  GAATTCCCCATCCCTGTGTGTCCAGATGCCTGGGGGGTCTTAGCCTCGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATCCCTGTGTGTCCAGATGCCTGGGGGGTCTTAGCCTCGAT  50

seq1  TTCTGGGCTCTTTTGTGGGTTCAGAAGGAAGGATACCTGGTTAGTAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTCTTTTGTGGGTTCAGAAGGAAGGATACCTGGTTAGTAGTGT  100

seq1  TCTTCCTCCAATAGGATAGCCCTACTTGGTCTTTAGTCACCCCAGGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCAATAGGATAGCCCTACTTGGTCTTTAGTCACCCCAGGCTGA  150

seq1  GTGGGACAAACACTCCATCTGTCAACTAGCAACCAACAACTGCTTCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACAAACACTCCATCTGTCAACTAGCAACCAACAACTGCTTCTTGC  200

seq1  TGGCACAATGTAGGGGACCTGGGGACAGAGCCTGAGACCTCTGCTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATGTAGGGGACCTGGGGACAGAGCCTGAGACCTCTGCTGAGGT  250

seq1  TGGATAAGGTCTTATTTGTTTCCATCCTAATGGCCAACCCCAGTTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGGTCTTATTTGTTTCCATCCTAATGGCCAACCCCAGTTTTACA  300

seq1  CCTGGTTGGCACGATGGTCCTACTTTCCTTGCTACCCCTAGATCTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGGCACGATGGTCCTACTTTCCTTGCTACCCCTAGATCTTCCAT  350

seq1  TTCCTTTCTAGCTCTGGGTATATTGGATTATCGGGTACTGGGCACTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTAGCTCTGGGTATATTGGATTATCGGGTACTGGGCACTAACT  400

seq1  TCAAAGACTACGCTGTCGTCTTCACACAGCTGGAATTTGGGGATGAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACTACGCTGTCGTCTTCACACAGCTGGAATTTGGGGATGAGGTC  450

seq1  TTCAACACAGTGTCGTTGTACAGTAAGTGGGGTCTGGCAAGATTGCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACAGTGTCGTTGTACAGTAAGTGGGGTCTGGCAAGATTGCTCAC  500

seq1  CCTGAGGTTGGCTAGGGATTGGGGTAAAGAAAAGGGCAGGGATCACAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTGGCTAGGGATTGGGGTAAAGAAAAGGGCAGGGATCACAGCC  550

seq1  ACACTCTGGTCGCCTCTCAGAGGCTGCTCCTTCCTGCCCAGGTCGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGTCGCCTCTCAGAGGCTGCTCCTTCCTGCCCAGGTCGGACAG  600

seq1  AGATGGCTAGCCACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTAGCCACGAAGCCATGCAGCTATTCACCAAATGGAGCCAGGGG  650

seq1  CTGGGCTTCTTGTCTCAACAGCAGGCTCAGCTGCAGAAGGACCGTGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCTTGTCTCAACAGCAGGCTCAGCTGCAGAAGGACCGTGAGTG  700

seq1  TTGCTAGTATGGGCCTCGGAGAAACACAGGAAGCTCTGGTGCACATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTATGGGCCTCGGAGAAACACAGGAAGCTCTGGTGCACATAAGG  750

seq1  GCTGACCAGGGTGGTGGTGGCACATCCCCTGCTTTCCTTGATTTGTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCAGGGTGGTGGTGGCACATCCCCTGCTTTCCTTGATTTGTGCCT  800

seq1  TGTCACAGTCAGGCCTGTCTGGACAGTTTC-TTCAACAGAGGCTTGTGGG  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTCACAGTCAGGCCTGTCTGGACAGTTTCTTTCAACAGAGGCTTGTGGG  850

seq1  TGGGATCCTGGGAACTGCTACAGCCCCATTCTCACAACTGGCTCGCTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCTGGGAACTGCTACAGCCCCATTCTCACAACTGGCTCGCTTCT  900

seq1  TCTACAGTCACTTGTGCACACAAGATCCTCCAGGTAGGCCACC-TTTCT-  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TCTACAGTCACTTGTGCACACAAGATCCTCCAGGTAGGCCACCTTTTCTG  950

seq1  GTGCATCACTCTCAGCTCCCA-GGGGAGTAGGAGAAGGC-TGGGGCTCTG  995
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GTGCATCACTCTCAGCTCCCAGGGGGAGTAGGAGAAGGCTTGGGGCTCTG  1000

seq1  GGTGGACCATC-TTCAAAGCCTG-TGTAGCCCATGGCTCTGCCACTGGAA  1043
      ||||||||||| ||||||||||| ||||| |||||   |||||||||| |
seq2  GGTGGACCATCTTTCAAAGCCTGTTGTAG-CCATGCTCCTGCCACTGG-A  1048

seq1  AGGTGACGGGAGGTGGGG--ACAAAGGCTATTA-CAAGCTCAACCCCAA-  1089
      | ||||| ||||||||||  |||||| |||||| || |||||| ||||| 
seq2  ATGTGAC-GGAGGTGGGGGAACAAAGCCTATTACCAGGCTCAAACCCAAA  1097

seq1  -CACCTGCCCTGGTTTTCAGTGAGTGCCACACCCT  1123
       |||||| | ||| |||||||||   |||||||||
seq2  CCACCTGACTTGG-TTTCAGTGATGCCCACACCCT  1131