BAC Information

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BAC

Clone NameB6Ng01-320C11
Chromosome2 (Build37)
Map Location 145,970,452 - 146,111,354
singlet/doubletdoublet
Overlap geneInsm1
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320C11.bB6Ng01-320C11.g
ACCGA109600GA109601
length1,116609
definitionB6Ng01-320C11.b B6Ng01-320C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,970,452 - 145,971,579)(146,110,746 - 146,111,354)
sequence
gaattccatgtgcgattctcggaggttcacaggctaagttgcaaagcatg
catacgtaagccctgaaggtatttatgaaacctgttctagtaaatggaat
accagaccaaggtccacattcctcctgctaaggtagtgcctgctctgctt
ctcctctgggtgagaccttaggaaatgacctcaggcaggtaggagaacag
agatcctcaaagaggacaggttggtcagtctcaagcttattgacaaaata
ctaaggatttttatggtaaaataatagttttctaaagcattgaacgagga
actttgttaactatccatagaaaatacagtttttaatattttatttggag
aaatgtaggaaatgacaaatccatgacaacatcctggagtttttggtttg
gattggtagccgtgggaggtgtgggaagtcacaaggcacatctctgctca
tcttgccctggtggcaatattatatatatattatatatatagggtattga
tttgactaaataaagctcaaccactctagggcctaccttgctaattggct
gcagtttcaggagcagacattatagacatctccatgtggttttttttgat
gaaatatgaactgttccctaccgaaccaataattcatttctgatatggcc
atctgccattttctctaggagggattcttcctgggtcttatcattatctg
catatttccaaacctgccatcccaactcctttgaatctacaaaggtcaca
gcctgattttgtaagtattgatcttgagttttactttacctctgctaata
aaatctgtttcaatgggaaggaaaatttttgactcaaagtctttggttca
catatcatatacccactatgcatgtcgagattcaaaatggtccctaagag
tctttgctcttcacaccatcacgtggtgcactcctaagggagcagactga
ctggtgtggcctgcagagtattgtagagataacagcgtgtggtctccaaa
gctatgtcaatgttgcaaagaatactatactcaacttgtccttttccaga
taccactgcataggtaaggttccaagcaaccttggtacaccagctgtatg
agtgacctgccttaga
gaattcttaagtctgcctttggcccagacagctgccaactctggtgctgg
gcagtgggtagcctgccttatttaccagttcacaagaagaaagagagaga
gagagaagaaagaagaaaaaaagaaaagaaaagacataaaccatattggt
tttattgtaataaaaattataactggagaaaattatccatattttaaatg
taacttttattaaaatattaaaatttaaaatgtaaatttgaatgaagctc
tttgctcctgagaaggtattgcatgtccccactccatcatggatcctggc
ccatgtggaagtggcactggctagttcagcccaataattcactttattat
caaaatagaatctacagggattattcacattagtctgagcatcatccctg
cagcagctcaggttagatggttctccctggggtggagccaagaaatgcca
agccatctctttggggggggggtgtcagaccacaggctttccacagtgct
cctggaacacagggcacagtcttctctcatggcattaggttctactgctt
cttcccaacctcttgtgtttttatttcaaccgtgtgcgtgtgcatctgtg
tgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145970452_145971579
seq2: B6Ng01-320C11.b_46_1161

seq1  GAATTCCATGTGCGATTCTCGGAGGTTCACAGGCTAAGTTGCAAAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGCGATTCTCGGAGGTTCACAGGCTAAGTTGCAAAGCATG  50

seq1  CATACGTAAGCCCTGAAGGTATTTATGAAACCTGTTCTAGTAAATGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTAAGCCCTGAAGGTATTTATGAAACCTGTTCTAGTAAATGGAAT  100

seq1  ACCAGACCAAGGTCCACATTCCTCCTGCTAAGGTAGTGCCTGCTCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACCAAGGTCCACATTCCTCCTGCTAAGGTAGTGCCTGCTCTGCTT  150

seq1  CTCCTCTGGGTGAGACCTTAGGAAATGACCTCAGGCAGGTAGGAGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGGGTGAGACCTTAGGAAATGACCTCAGGCAGGTAGGAGAACAG  200

seq1  AGATCCTCAAAGAGGACAGGTTGGTCAGTCTCAAGCTTATTGACAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCAAAGAGGACAGGTTGGTCAGTCTCAAGCTTATTGACAAAATA  250

seq1  CTAAGGATTTTTATGGTAAAATAATAGTTTTCTAAAGCATTGAACGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGATTTTTATGGTAAAATAATAGTTTTCTAAAGCATTGAACGAGGA  300

seq1  ACTTTGTTAACTATCCATAGAAAATACAGTTTTTAATATTTTATTTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTAACTATCCATAGAAAATACAGTTTTTAATATTTTATTTGGAG  350

seq1  AAATGTAGGAAATGACAAATCCATGACAACATCCTGGAGTTTTTGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGGAAATGACAAATCCATGACAACATCCTGGAGTTTTTGGTTTG  400

seq1  GATTGGTAGCCGTGGGAGGTGTGGGAAGTCACAAGGCACATCTCTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTAGCCGTGGGAGGTGTGGGAAGTCACAAGGCACATCTCTGCTCA  450

seq1  TCTTGCCCTGGTGGCAATATTATATATATATTATATATATAGGGTATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCTGGTGGCAATATTATATATATATTATATATATAGGGTATTGA  500

seq1  TTTGACTAAATAAAGCTCAACCACTCTAGGGCCTACCTTGCTAATTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAAATAAAGCTCAACCACTCTAGGGCCTACCTTGCTAATTGGCT  550

seq1  GCAGTTTCAGGAGCAGACATTATAGACATCTCCATGTGGTTTTTTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCAGGAGCAGACATTATAGACATCTCCATGTGGTTTTTTTTGAT  600

seq1  GAAATATGAACTGTTCCCTACCGAACCAATAATTCATTTCTGATATGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGAACTGTTCCCTACCGAACCAATAATTCATTTCTGATATGGCC  650

seq1  ATCTGCCATTTTCTCTAGGAGGGATTCTTCCTGGGTCTTATCATTATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCATTTTCTCTAGGAGGGATTCTTCCTGGGTCTTATCATTATCTG  700

seq1  CATATTTCCAAACCTGCCATCCCAACTCCTTTGAATCTACAAAGGTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCCAAACCTGCCATCCCAACTCCTTTGAATCTACAAAGGTCACA  750

seq1  GCCTGATTTTGTAAGTATTGATCTTGAGTTTTACTTTACCTCTGCTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTTTGTAAGTATTGATCTTGAGTTTTACTTTACCTCTGCTAATA  800

seq1  AAATCTGTTTCAATGGGAAGGAAAATTTTTGACTCAAAGTCTTTGGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTTTCAATGGGAAGGAAAATTTTTGACTCAAAGTCTTTGGTTCA  850

seq1  CATATCATATACCCACTATGCATGTCGAGATTCAAAATGGTCCCTAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATATACCCACTATGCATGTCGAGATTCAAAATGGTCCCTAAGAG  900

seq1  TCTTTGCTCTTCACACCATCACGTGGTGCACTCCTAAAGGGAGCAGAACT  950
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TCTTTGCTCTTCACACCATCACGTGGTGCACTCCT-AAGGGAGCAG-ACT  948

seq1  GACTGGTGTGGCCTGCAGAGTATTGTAGAGATAACAGCGTGTGGTCTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGTGGCCTGCAGAGTATTGTAGAGATAACAGCGTGTGGTCTCCA  998

seq1  AAGCTATGTCAATGTTGCAAAG-ATACTATAACTCCACCTTGTCCTTTTC  1049
      |||||||||||||||||||||| ||||||| ||| || ||||||||||||
seq2  AAGCTATGTCAATGTTGCAAAGAATACTAT-ACT-CAACTTGTCCTTTTC  1046

seq1  CAGATTACCAACTGCCATAGGGTAAGGTTTCCCAAGCAACCCTTTGGTAA  1099
      |||| |||| |||| |||| |||||||||  ||||||||||  ||||| |
seq2  CAGA-TACC-ACTG-CATA-GGTAAGGTT--CCAAGCAACC--TTGGT-A  1087

seq1  CACCAGCTGTATGAGTGACCTGCCTTAGA  1128
      |||||||||||||||||||||||||||||
seq2  CACCAGCTGTATGAGTGACCTGCCTTAGA  1116

seq1: chr2_146110746_146111354
seq2: B6Ng01-320C11.g_67_675 (reverse)

seq1  ACACACACACACAGATGCACACGCACACGGTTGAAATAAAAACACAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAGATGCACACGCACACGGTTGAAATAAAAACACAAGAG  50

seq1  GTTGGGAAGAAGCAGTAGAACCTAATGCCATGAGAGAAGACTGTGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAAGAAGCAGTAGAACCTAATGCCATGAGAGAAGACTGTGCCCTG  100

seq1  TGTTCCAGGAGCACTGTGGAAAGCCTGTGGTCTGACACCCCCCCCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGGAGCACTGTGGAAAGCCTGTGGTCTGACACCCCCCCCCCAAA  150

seq1  GAGATGGCTTGGCATTTCTTGGCTCCACCCCAGGGAGAACCATCTAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTTGGCATTTCTTGGCTCCACCCCAGGGAGAACCATCTAACCT  200

seq1  GAGCTGCTGCAGGGATGATGCTCAGACTAATGTGAATAATCCCTGTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTGCAGGGATGATGCTCAGACTAATGTGAATAATCCCTGTAGAT  250

seq1  TCTATTTTGATAATAAAGTGAATTATTGGGCTGAACTAGCCAGTGCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGATAATAAAGTGAATTATTGGGCTGAACTAGCCAGTGCCACT  300

seq1  TCCACATGGGCCAGGATCCATGATGGAGTGGGGACATGCAATACCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGGGCCAGGATCCATGATGGAGTGGGGACATGCAATACCTTCTC  350

seq1  AGGAGCAAAGAGCTTCATTCAAATTTACATTTTAAATTTTAATATTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAAGAGCTTCATTCAAATTTACATTTTAAATTTTAATATTTTAA  400

seq1  TAAAAGTTACATTTAAAATATGGATAATTTTCTCCAGTTATAATTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTACATTTAAAATATGGATAATTTTCTCCAGTTATAATTTTTAT  450

seq1  TACAATAAAACCAATATGGTTTATGTCTTTTCTTTTCTTTTTTTCTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAACCAATATGGTTTATGTCTTTTCTTTTCTTTTTTTCTTCTT  500

seq1  TCTTCTCTCTCTCTCTCTTTCTTCTTGTGAACTGGTAAATAAGGCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCTCTCTCTCTTTCTTCTTGTGAACTGGTAAATAAGGCAGGCT  550

seq1  ACCCACTGCCCAGCACCAGAGTTGGCAGCTGTCTGGGCCAAAGGCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGCCCAGCACCAGAGTTGGCAGCTGTCTGGGCCAAAGGCAGACT  600

seq1  TAAGAATTC  609
      |||||||||
seq2  TAAGAATTC  609