MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-320E22
Chromosome	2 (Build37)
Map Location	171,780,473 - 171,955,374
singlet/doublet	doublet
Overlap gene	LOC100043744, Cbln4
Upstream gene	LOC100043743
Downstream gene	Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043743 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100043744 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043744
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Cbln4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228942 MGI:2154433
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mc3r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17201 MGI:96929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010011I20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67017 MGI:1914267
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aurka (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20878 MGI:894678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cstf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67337 MGI:1914587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	F730031O20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320664 MGI:2444482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	2410001C21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66404 MGI:1913654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A330041C17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654821 MGI:3606143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700029J11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76426 MGI:1923676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 2 Proteins

name	LOC629957 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 494 ESTs, 5 Proteins

name	Tcfap2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21420 MGI:106032
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043750 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Bmp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12162 MGI:103302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043751 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Spo11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26972 MGI:1349669
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rae1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66679 MGI:1913929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56190 MGI:1889294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctcfl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664799 MGI:3652571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG619800 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619800 MGI:3648376
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	LOC100043743 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250134 GeneID:100043743
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043743 transcript_id : XM_001480865.1

name	LOC100043744 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250137 GeneID:100043744
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to retinitis pigmentosa GTPase regulator transcript_id : XM_001480868.1

name	Cbln4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345266 GeneID:228942 MGI:2154433
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cerebellin 4 precursor protein transcript_id : NM_175631.2

name	Mc3r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371951 GeneID:17201 MGI:96929
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanocortin 3 receptor transcript_id : NM_008561.3

name	2010011I20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353140 GeneID:67017 MGI:1914267
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010011I20 gene transcript_id : NM_025912.3

name	Aurka (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130130 GeneID:20878 MGI:894678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aurora kinase A transcript_id : NM_011497.3

name	Cstf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892406 GeneID:67337 MGI:1914587
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cleavage stimulation factor, 3' pre-RNA, subunit 1 transcript_id : NM_024199.2

name	F730031O20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131077 GeneID:320664 MGI:2444482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA F730031O20 gene transcript_id : NM_001033538.2

name	F730031O20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249363 GeneID:320664 MGI:2444482
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA F730031O20 gene transcript_id : NM_001080820.1

name	2410001C21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803188 GeneID:66404 MGI:1913654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410001C21 gene transcript_id : NM_025542.2

name	A330041C17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386907 GeneID:654821 MGI:3606143
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A330041C17 gene transcript_id : NM_001039560.2

name	1700029J11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367448 GeneID:76426 MGI:1923676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 2 Proteins product : RIKEN cDNA 1700029J11 gene transcript_id : XM_130728.5

name	LOC629957 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250265 GeneID:629957
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 494 ESTs, 5 Proteins product : similar to 40S ribosomal protein S29 transcript_id : XM_894924.3

name	Tcfap2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678252 GeneID:21420 MGI:106032
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor AP-2, gamma transcript_id : NM_009335.1

name	LOC100043750 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250139 GeneID:100043750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to gamma-aminobutyric acid A receptor, epsilon transcript_id : XM_001480881.1

name	Bmp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982486 GeneID:12162 MGI:103302
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bone morphogenetic protein 7 transcript_id : NM_007557.2

name	LOC100043751 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149250141 GeneID:100043751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043751 transcript_id : XM_001480886.1

name	Spo11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755623 GeneID:26972 MGI:1349669
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae) transcript_id : NM_012046.1

name	Rae1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803370 GeneID:66679 MGI:1913929
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAE1 RNA export 1 homolog (S. pombe) transcript_id : NM_175112.3

name	Rbm38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053932 GeneID:56190 MGI:1889294
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 38 transcript_id : NM_019547.2

name	Ctcfl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487068 GeneID:664799 MGI:3652571
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CCCTC-binding factor (zinc finger protein)-like transcript_id : NM_001081387.1

name	EG619800 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82887848 GeneID:619800 MGI:3648376
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG619800 transcript_id : XM_884173.1

name	LOC100043743 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250135 GeneID:100043743
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480915.1

name	LOC100043744 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250138 GeneID:100043744
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480918.1

name	Cbln4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28274690 CCDS:CCDS17126.1 GeneID:228942 MGI:2154433
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cerebellin 4 precursor protein_id : NP_783439.1

name	Mc3r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678822 CCDS:CCDS17127.1 GeneID:17201 MGI:96929
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : melanocortin 3 receptor protein_id : NP_032587.1

name	2010011I20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541856 CCDS:CCDS17128.1 GeneID:67017 MGI:1914267
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC67017 protein_id : NP_080188.2

name	Aurka (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46358064 CCDS:CCDS17129.1 GeneID:20878 MGI:894678
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0031625 - ubiquitin protein ligase binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000278 - mitotic cell cycle [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : aurora A; serine/threonine kinase 6 product : serine/threonine protein kinase 6 protein_id : NP_035627.1

name	Cstf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195628 CCDS:CCDS17130.1 GeneID:67337 MGI:1914587
definition	GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 product : cleavage stimulation factor, 3' pre-RNA, subunit 1 protein_id : NP_077161.1

name	F730031O20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249364 GeneID:320664 MGI:2444482
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; likely orthologue of H. sapiens chromosome 20 open reading frame 32 (C20orf32) product : HEF-like protein isoform 2 protein_id : NP_001074289.1

name	F730031O20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677627 CCDS:CCDS17131.1 GeneID:320664 MGI:2444482
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; likely orthologue of H. sapiens chromosome 20 open reading frame 32 (C20orf32) product : HEF-like protein isoform 1 protein_id : NP_001028710.1

name	2410001C21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794468 CCDS:CCDS17132.1 GeneID:66404 MGI:1913654
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : likely orthologue of H. sapiens chromosome 20 open reading frame 43 (C20orf43) product : hypothetical protein LOC66404 protein_id : NP_079818.1

name	A330041C17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88319968 CCDS:CCDS17133.1 GeneID:654821 MGI:3606143
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008375 - acetylglucosaminyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : likely orthologue of H. sapiens chromosome 20 open reading frame 105 (C20orf105) product : hypothetical protein LOC654821 protein_id : NP_001034649.1

name	1700029J11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63492721 GeneID:76426 MGI:1923676
definition	codon_start : 1 product : hypothetical protein LOC76426 protein_id : XP_130728.3

name	LOC629957 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82887393 GeneID:629957
definition	codon_start : 1 product : similar to 40S ribosomal protein S29 protein_id : XP_900017.1

name	Tcfap2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678253 CCDS:CCDS17135.1 GeneID:21420 MGI:106032
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] [Evidence IMP] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : transcription factor product : transcription factor AP-2, gamma protein_id : NP_033361.1

name	LOC100043750 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250140 GeneID:100043750
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480931.1

name	Bmp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982487 CCDS:CCDS17136.1 GeneID:12162 MGI:103302
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0005125 - cytokine activity [Evidence TAS]; GO:0008083 - growth factor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007411 - axon guidance [Evidence IDA]; GO:0030509 - BMP signaling pathway [Evidence IDA]; GO:0048754 - branching morphogenesis of a tube [Evidence IDA]; GO:0051216 - cartilage development [Evidence IEA]; GO:0048468 - cell development [Evidence IDA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0048595 - eye morphogenesis (sensu Mammalia) [Evidence IMP]; GO:0040007 - growth [Evidence IEA]; GO:0001822 - kidney development [Evidence IMP]; GO:0001707 - mesoderm formation [Evidence IGI]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IDA]; GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0001503 - ossification [Evidence IEA]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045597 - positive regulation of cell differentiation [Evidence IDA]; GO:0007435 - salivary gland morphogenesis [Evidence IMP]; GO:0035239 - tube morphogenesis [Evidence IDA] codon_start : 1 note : osteogenic protein 1 product : bone morphogenetic protein 7 protein_id : NP_031583.2

name	LOC100043751 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149250142 GeneID:100043751
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480936.1

name	Spo11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755624 CCDS:CCDS17137.1 GeneID:26972 MGI:1349669
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0007131 - meiotic recombination [Evidence IEA]; GO:0001541 - ovarian follicle development [Evidence IMP] codon_start : 1 function : believed to initiate meiotic recombination through formation of a covalent protein-DNA intermediate resulting in a double strand break note : sporulation protein, meiosis-specific, SPO11 homolog (S. cervisiae) product : sporulation protein, meiosis-specific, SPO11 homolog protein_id : NP_036176.1

name	Rae1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201956 CCDS:CCDS17138.1 GeneID:66679 MGI:1913929
definition	codon_start : 1 product : RAE1 RNA export 1 homolog protein_id : NP_780321.1

name	Rbm38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053933 CCDS:CCDS17139.1 GeneID:56190 MGI:1889294
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : seb4 mRNA; RNA-binding region (RNP1, RRM) containing 1; seb4-like product : seb4 protein_id : NP_062420.2

name	Ctcfl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487069 GeneID:664799 MGI:3652571
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : BORIS; likely orthologue of H. sapiens CCCTC-binding factor-like protein (CTCFL) product : CCCTC-binding factor (zinc finger protein)-like protein_id : NP_001074856.1

name	EG619800 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82887849 GeneID:619800 MGI:3648376
definition	codon_start : 1 product : similar to ubiquitin A-52 residue ribosomal protein fusion product 1 protein_id : XP_889266.1

clone name	MSMg01-510I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473F07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-123I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169A18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-320E22.b	B6Ng01-320E22.g
ACC	GA109709	GA109710
length	1,131	1,145
definition	B6Ng01-320E22.b	B6Ng01-320E22.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(171,780,473 - 171,781,600)	(171,954,240 - 171,955,374)
sequence	gaattctggggaccttccacggggtatatataaatgctagaggcccgaga ggcagggtggctgttggctgttggctgttggttgttgttggtcacgattt gttaaatacttgtgtgcaaagaaacaacaagaagaaattagatattatga tggcaaagatcaaacttgactaaggaatttgatgccccttatcagcagga agtagtctaatgataatgttgtctcttttttgacccctggctttattcag gaatctctctcctttcctctctctccttttctctctcctatccagtgtta gggggtgaaaaggtggaagaaaggtggaagaacagtggaagaaagaagaa cccatatagtagccaagaatggctacaactgctaacaaagcctcctctgg aaactacctgctccattctccctctatgtgtgtatgtccatatgtattat acacatatatgtaggtgtatgtgcacgtgtgcaagtacgcatggagaggc cagccaatgaggttggatgtcttcctcagtttctttacacttattttttg aggttgagtctctcactgaacccacagatcacctatttggctagagaagc tggccagcaagcccctgaggaccctcttaccccttcccctgctgggattg caggcttgcactgcagtgcctatggtttaactctacaaagtagtttactg gctgggccatctccctgcccccactttctctttaacccatccttccctat cctgatggatatgtctcctaaactctccggaacatctttgagtattctac aagtcacaccaaactcttacaaatggcctcttctgttctccagacttcat tctccccacctttcccttggcttccctcaccctctcctgatctttttctc tctctttctctctctctccctctccctctctttcctctctagacacaccc aagatcccagcccctcccatccaccaactgccccatccctcctcccatga tgtcctgaacctttcttcttttctcatgacctttcacctcttatttgtcc tttgtcatgaaattccattggccctggagattgattccattgatggaaat gaacctttctcattatgaccagtcttctcct	gaattctcttcatgaatttcaacaagttgttattatattaagtcctacaa aactccaggttcattcttggcactgcaatcaagtgctgatccaggcaaga gaaggatctgcctcctgggagctcacctgctggtggtaggagacaagaac acaccacagcaagtaagggtggagcatcagtaatatcaagaagtgttatg ggtagaagtgaggggcagagaagtttctgagaaagcacccctcagagggg tgttgtgatgtttaactttaatattcaatttgacataacctggcaccaca tgggaggagagtctcaatgagggattgtcttcattgggttagcctgtgga catgtttggaggggatcatcttaactaacttaaatgatctgggaagaccc aacccactgtgggtggtaccattccctatgcttggggtcctggctgtata aaaatagagaaactgagcagagtacaaacaagcaagaagcatgcatgcat tcatttcctcatgctcctgactgtggatgtgatatgactagcagcttcaa gttcatgtcctgagttccctgctatgatgggctatgacctagaattgtga gacagtcttattctcccttaagttgctcttcttcagatcatattatccca gcctcataaataaaacccaatgtgcactgaggagaaattagatgagtggg ggagcaactgagtagcttggggcagagcatcagggttgagatgcaaacag ccacttctcctggtaagtggccctgcatactccacctctggaatgtcttc ccattatagggcaggctgatatctgcgaattttcccaatgagtgattctt attattagagctttgctatgcagcacaacccagtacccacatctataccc tgtgagatggcaaagacatgggaatcctaccacttatgaaaaaagtctgt tgtgcaatgctgttcttgggagatttcaaatggtgggacactctgctacc tccagcaatactgacgggtcatgatgctcttgatgatggtattaaatgtc ctgggtgaatgggtggtgatacactgaccatttccttggccagagcagat gccaaggccacttataattttactgtctaactgtgttagtcaggg
quality values	Open. Hide. 58 33 34 30 58 58 39 58 62 62 62 31 20 62 62 62 62 37 24 62 62 62 62 62 47 42 47 62 62 62 32 25 26 25 23 23 27 28 25 38 49 62 59 62 62 62 62 59 59 59 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 59 59 56 54 43 38 54 38 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 49 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 42 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 47 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 54 54 58 58 58 58 58 58 49 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 49 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 58 54 58 54 52 58 58 58 58 54 54 52 39 48 54 58 54 58 58 54 54 54 41 43 54 58 58 58 58 49 58 45 51 50 58 50 58 58 49 58 58 58 58 47 47 50 50 58 54 52 52 51 47 41 47 58 58 44 33 54 51 24 41 48 54 58 54 54 50 35 41 41 41 54 54 50 50 48 48 50 54 58 58 51 58 58 37 32 58 58 50 50 39 58 42 58 50 51 51 50 47 58 51 51 53 39 53 51 44 43 54 54 50 33 58 46 58 37 41 51 50 58 49 44 40 44 35 54 58 42 39 53 42 54 54 49 40 47 54 54 54 40 44 47 54 54 53 49 42 49 39 53 49 44 35 50 53 52 39 44 37 33 40 41 51 54 51 40 52 53 37 54 40 39 38 45 51 49 40 44 38 51 41 51 37 49 32 35 52 44 32 42 42 54 53 37 53 45 41 31 40 41 52 52 37 45 31 52 32 52 52 32 31 47 32 40 26 40 33 46 33 30 45 33 43 45 52 49 31 29 37 22 39 40 36 34 43 30 32 41 24 24 34 39 30 31 30 30 33 43 26 51 51 30 51 41 43 32 29 27 30 51 30 31 32 41 28 41 42 31 45 31 28 30 41 24 23 29 26 19 31 32 24 35 22 46 9 12 28 31 32 31 32 31 46 46 25 30 31 42 42 47 43 25 48 31 44 24 30 36 27 37 37 30 46 27 23 26 28 30 47 31 32 31 15 18 33 14 31 41 25 28 38 46 48 46 37 32 31 28 25 23 27 37 37 48 38 32 27 31 37 31 25 29 30 31 31 28 44 31 10 10 19 19 44 30 14 16 17 21 30 47 25 21 25 17 31 31 27 11 23 33 26 16 13 22 29 28 33 12 15 25 19 26 32 27 36 25 11 15 33 39 39 25 22 31 43 30 23 32 31 20 17 24 21 17 18 18 22 30 28 39 39 32 31 34 15 33 26 11 12 13 18 16 39 22 12 25 28 24 20 21 9 18 28 19 17 15 14 7 18 20 28 15 6 4 18 8 27 47 34 21 10 13 17 20 24 20 21 10 7 10 30 18 11 13 12 20 8 6 12 14 12 11 34 21 6 11 28 27 5 17 7 6 7 11 8 7 15 17 12 4 16 22 6 12 16 16 16 7 11 9 25 8 17 4 7 22 6 14 4 7 8 11 9 6 21 13 3 3 7 9 21 5 8 6 24 28 17 4 11 10 5 11 14 17 26 12 3 2 6 5 5 4 12 8 17 17 4 11 6 3 3 7 7 8 6 5 11 24 2	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr2_171780473_171781600
seq2: B6Ng01-320E22.b_44_1174

seq1  GAATTCTGGGGACCTTCCACGGGGTATATATAAATGCTAGAGGCCCGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGACCTTCCACGGGGTATATATAAATGCTAGAGGCCCGAGA  50

seq1  GGCAGGGTGGCTGTTGGCTGTTGGCTGTTGGTTGTTGTTGGTCACGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTGGCTGTTGGCTGTTGGCTGTTGGTTGTTGTTGGTCACGATTT  100

seq1  GTTAAATACTTGTGTGCAAAGAAACAACAAGAAGAAATTAGATATTATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATACTTGTGTGCAAAGAAACAACAAGAAGAAATTAGATATTATGA  150

seq1  TGGCAAAGATCAAACTTGACTAAGGAATTTGATGCCCCTTATCAGCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGATCAAACTTGACTAAGGAATTTGATGCCCCTTATCAGCAGGA  200

seq1  AGTAGTCTAATGATAATGTTGTCTCTTTTTTGACCCCTGGCTTTATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTAATGATAATGTTGTCTCTTTTTTGACCCCTGGCTTTATTCAG  250

seq1  GAATCTCTCTCCTTTCCTCTCTCTCCTTTTCTCTCTCCTATCCAGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCTCCTTTCCTCTCTCTCCTTTTCTCTCTCCTATCCAGTGTTA  300

seq1  GGGGGTGAAAAGGTGGAAGAAAGGTGGAAGAACAGTGGAAGAAAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGAAAAGGTGGAAGAAAGGTGGAAGAACAGTGGAAGAAAGAAGAA  350

seq1  CCCATATAGTAGCCAAGAATGGCTACAACTGCTAACAAAGCCTCCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATAGTAGCCAAGAATGGCTACAACTGCTAACAAAGCCTCCTCTGG  400

seq1  AAACTACCTGCTCCATTCTCCCTCTATGTGTGTATGTCCATATGTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCTGCTCCATTCTCCCTCTATGTGTGTATGTCCATATGTATTAT  450

seq1  ACACATATATGTAGGTGTATGTGCACGTGTGCAAGTACGCATGGAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATGTAGGTGTATGTGCACGTGTGCAAGTACGCATGGAGAGGC  500

seq1  CAGCCAATGAGGTTGGATGTCTTCCTCAGTTTCTTTACACTTATTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATGAGGTTGGATGTCTTCCTCAGTTTCTTTACACTTATTTTTTG  550

seq1  AGGTTGAGTCTCTCACTGAACCCACAGATCACCTATTTGGCTAGAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGTCTCTCACTGAACCCACAGATCACCTATTTGGCTAGAGAAGC  600

seq1  TGGCCAGCAAGCCCCTGAGGACCCTCTTACCCCTTCCCCTGCTGGGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCAAGCCCCTGAGGACCCTCTTACCCCTTCCCCTGCTGGGATTG  650

seq1  CAGGCTTGCACTGCAGTGCCTATGGTTTAACTCTACAAAGTAGTTTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCACTGCAGTGCCTATGGTTTAACTCTACAAAGTAGTTTACTG  700

seq1  GCTGGGCCATCTCCCTGCCCCCACTTTCTCTTTAACCCATCCTTCCCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCATCTCCCTGCCCCCACTTTCTCTTTAACCCATCCTTCCCTAT  750

seq1  CCTGATGGATATGTCTCCTAAACTCTCCGGAACATCTTTGAGTATTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGATATGTCTCCTAAACTCTCCGGAACATCTTTGAGTATTCTAC  800

seq1  AAGTCACACCAAACTCTTACAAATGGCCTCTTCTGTTCTCCAGACTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACACCAAACTCTTACAAATGGCCTCTTCTGTTCTCCAGACTTCAT  850

seq1  TCTCCCCACCTTTCCCTTGGCTTCCCTCACCCTCTCCTGATCTTTTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCACCTTTCCCTTGGCTTCCCTCACCCTCTCCTGATCTTTTTCTC  900

seq1  TCTCTTTCTCTCTCTCTCCCTCTCCCTCTCTTTCCTCTCTAGACACACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTCTCTCTCCCTCTCCCTCTCTTTCCTCTCTAGACACACCC  950

seq1  AAGATCCCAGCCCCTCCCATCCACCAACTGCCCCATCCCTCCTCCCATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCAGCCCCTCCCATCCACCAACTGCCCCATCCCTCCTCCCATGA  1000

seq1  TGTCCTGAACCTTTCTTCTTTTTCTCATGACCTTTCACCTCTTATTTGTC  1050
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTCCTGAACCTTTCTTC-TTTTCTCATGACCTTTCACCTCTTATTTGTC  1049

seq1  CCTTGTCATG-AATTTCATT-GCCTTGAAGAATGATCCCAATGAT-GAAA  1097
      | |||||||| |||| |||| ||| || ||| |||| ||| |||| ||||
seq2  CTTTGTCATGAAATTCCATTGGCCCTGGAGATTGATTCCATTGATGGAAA  1099

seq1  TGACCTTTCCTCATTATGACCAGTC-TCTCCT  1128
      ||| | || |||||||||||||||| ||||||
seq2  TGAACCTTTCTCATTATGACCAGTCTTCTCCT  1131

seq1: chr2_171954240_171955374
seq2: B6Ng01-320E22.g_63_1207 (reverse)

seq1  CCCTGACTAACACAGTTAG-CA-TAAAA-TATAAAGTGCCTT-GCATCTA  46
      ||||||||||||||||||| || ||||| |||||   ||||| |||||| 
seq2  CCCTGACTAACACAGTTAGACAGTAAAATTATAAGTGGCCTTGGCATCTG  50

seq1  CTACATGCCCAGGAAATGGTCAGTGGTATCACCACC--ATCA-CCAGGAC  93
      || |  ||| |||||||||||||| |||||||||||   ||| |||||||
seq2  CT-CTGGCCAAGGAAATGGTCAGT-GTATCACCACCCATTCACCCAGGAC  98

seq1  CATTAATACCATCATCAAGAGCATCATGA-CCGTCAGTATTGCTTGGGGT  142
        ||||||||||||||||||||||||||| |||||||||||||| | |||
seq2  ATTTAATACCATCATCAAGAGCATCATGACCCGTCAGTATTGCTGGAGGT  148

seq1  AGCAGAGTGTCCCACCATTTGAAATCTCCC-AGAACAGCATTGCACAACA  191
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCAGAGTGTCCCACCATTTGAAATCTCCCAAGAACAGCATTGCACAACA  198

seq1  GACTTTTTTCAT-AGTGGTAGGATT-CCATGTCTTTGCCATCTCACAGGG  239
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GACTTTTTTCATAAGTGGTAGGATTCCCATGTCTTTGCCATCTCACAGGG  248

seq1  TATAGATGTGGGTACT-GGTTGTGCTGCATAGCAAAGCTCTAATAATAAG  288
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATAGATGTGGGTACTGGGTTGTGCTGCATAGCAAAGCTCTAATAATAAG  298

seq1  AATCACTCATTGGGAAAATTCGCAGATATCAGCCTGCCCTATAATGGGAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCATTGGGAAAATTCGCAGATATCAGCCTGCCCTATAATGGGAA  348

seq1  GACATTCCAGAGGTGGAGTATGCAGGGCCACTTACCAGGAGAAGTGGCTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCCAGAGGTGGAGTATGCAGGGCCACTTACCAGGAGAAGTGGCTG  398

seq1  TTTGCATCTCAACCCTGATGCTCTGCCCCAAGCTACTCAGTTGCTCCCCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCTCAACCCTGATGCTCTGCCCCAAGCTACTCAGTTGCTCCCCC  448

seq1  ACTCATCTAATTTCTCCTCAGTGCACATTGGGTTTTATTTATGAGGCTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTAATTTCTCCTCAGTGCACATTGGGTTTTATTTATGAGGCTGG  498

seq1  GATAATATGATCTGAAGAAGAGCAACTTAAGGGAGAATAAGACTGTCTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATGATCTGAAGAAGAGCAACTTAAGGGAGAATAAGACTGTCTCA  548

seq1  CAATTCTAGGTCATAGCCCATCATAGCAGGGAACTCAGGACATGAACTTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAGGTCATAGCCCATCATAGCAGGGAACTCAGGACATGAACTTG  598

seq1  AAGCTGCTAGTCATATCACATCCACAGTCAGGAGCATGAGGAAATGAATG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTAGTCATATCACATCCACAGTCAGGAGCATGAGGAAATGAATG  648

seq1  CATGCATGCTTCTTGCTTGTTTGTACTCTGCTCAGTTTCTCTATTTTTAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGCTTCTTGCTTGTTTGTACTCTGCTCAGTTTCTCTATTTTTAT  698

seq1  ACAGCCAGGACCCCAAGCATAGGGAATGGTACCACCCACAGTGGGTTGGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGACCCCAAGCATAGGGAATGGTACCACCCACAGTGGGTTGGG  748

seq1  TCTTCCCAGATCATTTAAGTTAGTTAAGATGATCCCCTCCAAACATGTCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGATCATTTAAGTTAGTTAAGATGATCCCCTCCAAACATGTCC  798

seq1  ACAGGCTAACCCAATGAAGACAATCCCTCATTGAGACTCTCCTCCCATGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAACCCAATGAAGACAATCCCTCATTGAGACTCTCCTCCCATGT  848

seq1  GGTGCCAGGTTATGTCAAATTGAATATTAAAGTTAAACATCACAACACCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGGTTATGTCAAATTGAATATTAAAGTTAAACATCACAACACCC  898

seq1  CTCTGAGGGGTGCTTTCTCAGAAACTTCTCTGCCCCTCACTTCTACCCAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGGGTGCTTTCTCAGAAACTTCTCTGCCCCTCACTTCTACCCAT  948

seq1  AACACTTCTTGATATTACTGATGCTCCACCCTTACTTGCTGTGGTGTGTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCTTGATATTACTGATGCTCCACCCTTACTTGCTGTGGTGTGTT  998

seq1  CTTGTCTCCTACCACCAGCAGGTGAGCTCCCAGGAGGCAGATCCTTCTCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCCTACCACCAGCAGGTGAGCTCCCAGGAGGCAGATCCTTCTCT  1048

seq1  TGCCTGGATCAGCACTTGATTGCAGTGCCAAGAATGAACCTGGAGTTTTG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGATCAGCACTTGATTGCAGTGCCAAGAATGAACCTGGAGTTTTG  1098

seq1  TAGGACTTAATATAATAACAACTTGTTGAAATTCATGAAGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTAATATAATAACAACTTGTTGAAATTCATGAAGAGAATTC  1145

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information