BAC Information

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BAC

Clone NameB6Ng01-320J09
Chromosome2 (Build37)18 (Build37)
Map Location 45,302,288 - 45,303,26565,575,068 - 65,576,159
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320J09.bB6Ng01-320J09.g
ACCGA109917GA109918
length1,1381,097
definitionB6Ng01-320J09.b B6Ng01-320J09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,302,288 - 45,303,265)(65,575,068 - 65,576,159)
sequence
gaattctcttccaggtagttgacttcccgcttaaggactccgcggggacc
atacatctcgtgggacagcatttcttgcaaatgaatataaggccagagca
caaaatttttaaaatcttttcattgttgattttttttttttttttttttt
ttttttttttcccttcccttttttcttcccagatctggcctattcattca
acttcttggatactttctcagaaaaatagaacaagaaacattcacacaca
cacacacacattcacacaaatagtatttttgtattttaaatcctttaatt
acacaatggaaatagctaagtgggccactttccagcacacatcatacttt
acaggtgccgtctcttaacaattttctgttaataagcatcatagtgattt
cccttatggtgaatacctttaattcattaaggcgattaatactctgtact
tctgtatgcatttacatcttcaaaaagattgctccttttccaatatagtt
caattttctagccataaactgtttgacaattttccattcattatctattg
attaatatgaagtagaagaaagcagtttcataagttgctggtaatgaatt
tatatttaatcaaatgttatggttttaatataagatatactttaaattct
tatgtgttgaggacttggtctgcagttggtgaagttatttggggcattta
tagaaaatatagaatgtggggcctaccgtgggaaagtaagccattagggg
tgggtcttgtgagtagagcctcttcctatcacattctttgtttcctggaa
ccagtttagctaaggatgccccctgttatgtttctacaactatgatgctc
tgcccaagagcgtaagacaacagcaacaacaaaaccaacaaaaacagcaa
cagcaaattgcaaaggccaaaataaaacaacaacaaaaaaaaatctatcc
cagactgaaaccttctgaaatcaagaaccaaaataacatctcgtttaagt
tgttctcttgggtgttcttggttacatctacacaaaataaccaatacacc
aaggtcaacagatctacattcattgaaagtataaaaatgtgtaaagaaaa
ttactatctctgtaatctgtatgccttggtccccagta
gaattcattacatcctttgtaaactgatgactataagatggaaggctagg
ctagattgccactggataaactaaaagagaagggaagtgggatgggttct
ctgtggaaattcggcgactggagaaaaacatgtttctctaaatgtaaagt
cgttgtcgtagcattaacgaatgtgcaaagatgggtctggagagatggct
gaacattttagagtacttgctgctctttcaaaggacctaagttcagttcc
cagcacccacactgagtagcccacaagcacccataactccagctccagag
gatctaccacccttttctggcctctgcagacacacacacacacacacaca
cacacacacaccacaactaagaatgtgcaaagatgccggcattggtttga
tgacaggaaatgaaagttcattcctgaaggacacgctttcctgagaggaa
ggcgatagtcattgctacacaagggtgatggtgtgtgagcttgaggattt
actctttgtcaacatcaatgagctcgggtaaatgccaaggtagcgcatat
gaaagtaccaggatgctaaaaagacattgttcagtcctctaaactaaaca
ccaagttctaaatcactgtcttctttttattccttatctgtcctcagttc
acggaggcctgtacactctgcttcccccgctcctttctttcttcaggaaa
cttctggacgaatattgggcaatgagtgagactctcagcatctccactat
acactgtccccaacgccttagacccatgctgctaactaacctttaaaact
caaccgtggcagactatgcttgctcctcttttgaatgggtcttggagaag
ccagtttatttatatgatggtcaaggggaggagagctaaagatcagcccc
tggtatacccttctcggtgccagctgtgtcttcatctcctccttggttcc
ccttctgctgagacccagccctgggctgttacccacaaaggcatgtaaga
gcagtatcattacacttctgaggactgcaggcttcaccctttcaagcgtt
tacgaaaataacctagacattgaaacaggaagtaatctctatgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45302288_45303265
seq2: B6Ng01-320J09.b_200_1180

seq1  TTTCCCTTCCCATAGTCCTTCCCAGATCTGGCCTATTCATTCAACTTCTT  50
      ||||||||||| |  | |||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCCCTTTTTTCTTCCCAGATCTGGCCTATTCATTCAACTTCTT  50

seq1  GGATACTTTCTCAGAAAAATAGAACAAGAAACATTCACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTTCTCAGAAAAATAGAACAAGAAACATTCACACACACACACAC  100

seq1  ACATTCACACAAATAGTATTTTTGTATTTTAAATCCTTTAATTACACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACACAAATAGTATTTTTGTATTTTAAATCCTTTAATTACACAAT  150

seq1  GGAAATAGCTAAGTGGGCCACTTTCCAGCACACATCATACTTTACAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGCTAAGTGGGCCACTTTCCAGCACACATCATACTTTACAGGTG  200

seq1  CCGTCTCTTAACAATTTTCTGTTAGTAAGCATCATAGTGATTTCCCTTAT  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCGTCTCTTAACAATTTTCTGTTAATAAGCATCATAGTGATTTCCCTTAT  250

seq1  GGTGAATACATTTAATTCATTAAGGCGATTAATACTCTGTACTTCTGTAT  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATACCTTTAATTCATTAAGGCGATTAATACTCTGTACTTCTGTAT  300

seq1  GCATTTACATCTTCAAAAAGATTGCTCCTTTTCCAATATAGTTCAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACATCTTCAAAAAGATTGCTCCTTTTCCAATATAGTTCAATTTT  350

seq1  CTAGCCATAAACTGTTTGACAATTTTCCATTCATTATCTATTGATTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATAAACTGTTTGACAATTTTCCATTCATTATCTATTGATTAATA  400

seq1  TGAAGTAGAAGAAAGCAGTTTCATAAGTTGCTGGTAATGAATTTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGAAGAAAGCAGTTTCATAAGTTGCTGGTAATGAATTTATATTT  450

seq1  AATCAAATGTTATGGTTTTAATATAAGATATACTTTAAATTCTTATGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATGTTATGGTTTTAATATAAGATATACTTTAAATTCTTATGTGT  500

seq1  TGAGGACTTGGTCTGCAGTTGGTGAAGTTATTTGGGGCATTTATAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTTGGTCTGCAGTTGGTGAAGTTATTTGGGGCATTTATAGAAAA  550

seq1  TATAGAATGTGGGGCCTACCGTGGGAAAGTAAGCCATTAGGGGTGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATGTGGGGCCTACCGTGGGAAAGTAAGCCATTAGGGGTGGGTCT  600

seq1  TGTGAGTAGAGCCTCTTCCTATCACATTCTTTGTTTCCTGGAACCAG-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTGAGTAGAGCCTCTTCCTATCACATTCTTTGTTTCCTGGAACCAGTTT  650

seq1  AGCTAAGGATGCCCCCTGTTATGTTTCTACAACTATGATGCTCTGCCCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGGATGCCCCCTGTTATGTTTCTACAACTATGATGCTCTGCCCAA  700

seq1  GAGCGTAAGACAACAGCAACAACAAAACCAACAAAAACAGCAACAGCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTAAGACAACAGCAACAACAAAACCAACAAAAACAGCAACAGCAAA  750

seq1  -TGCAAAGGCCAAAATAAAACAACAAC-AAAAAAAATCTATCCCAGACTG  797
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGCAAAGGCCAAAATAAAACAACAACAAAAAAAAATCTATCCCAGACTG  800

seq1  -AACCTTCTGAAATCAAGAACC-AAATACAATCTCGTTTAAGTTGTTCTC  845
       ||||||||||||||||||||| |||||  ||||||||||||||||||||
seq2  AAACCTTCTGAAATCAAGAACCAAAATAACATCTCGTTTAAGTTGTTCTC  850

seq1  TTGGGTGTTC-TGGTTACATCTACACAAAAATAACCAATACACCAAAGGT  894
      |||||||||| ||||||||||||||| ||||||||||||||||| |||||
seq2  TTGGGTGTTCTTGGTTACATCTACAC-AAAATAACCAATACACC-AAGGT  898

seq1  C-ACAGATTCTACATTCATTTGAAAGTAATAAAAATGTGT-AAGAGATAT  942
      | ||||| |||||||||| |||||||| |||||||||||| |||| |  |
seq2  CAACAGA-TCTACATTCA-TTGAAAGT-ATAAAAATGTGTAAAGAAAATT  945

seq1  ACTATCTCTGTAATCTGTAGTGCTTTGTCCCCAGTA  978
      |||||||||||||||||||   ||| ||||||||||
seq2  ACTATCTCTGTAATCTGTATGCCTTGGTCCCCAGTA  981

seq1: chr18_65575068_65576159
seq2: B6Ng01-320J09.g_66_1162

seq1  GAATTCATTACATAATTTGTAAAATGATGACTAGAAAAGGGAAGGCAGGG  50
      |||||||||||||  |||||||| ||||||||| || | |||||||  ||
seq2  GAATTCATTACATCCTTTGTAAACTGATGACTATAAGATGGAAGGCTAGG  50

seq1  TTAGATTGATACTGTATAAACTAAGAGATATCACTTCTAGCAATAAAAAC  100
       |||||||  |||| ||||||||| ||| |       | |  ||     |
seq2  CTAGATTGCCACTGGATAAACTAAAAGAGAAGGGAAGT-GGGATGGGTTC  99

seq1  TCGTTGGAAATTCTCCGCATAGAGAAAAACATGTTTCTCTAAATGTAAAG  150
      ||  |||||||||  ||  | |||||||||||||||||||||||||||||
seq2  TCTGTGGAAATTCGGCGACTGGAGAAAAACATGTTTCTCTAAATGTAAAG  149

seq1  TCGTTGTCGTAGCATTAACGAATGTGCAAAGATGGGTCTGGAGAGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGTCGTAGCATTAACGAATGTGCAAAGATGGGTCTGGAGAGATGGC  199

seq1  TGAACATTTTAGAGTACTTGCTGCTCTTTCAGAGGACCTAAGTTCAGTTC  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAACATTTTAGAGTACTTGCTGCTCTTTCAAAGGACCTAAGTTCAGTTC  249

seq1  CCAGCACCCACACTGAGTAGCCCACAAGCACCCATAACTCCAGCTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCCACACTGAGTAGCCCACAAGCACCCATAACTCCAGCTCCAGA  299

seq1  GGATCTACCACCCTTTTCTGGCCTCTGCAGACACACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACCACCCTTTTCTGGCCTCTGCAGACACACACACACACACACAC  349

seq1  ACACACACACACCACAACTAAGAATGTGCAAAGATGCCGGCATTGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACCACAACTAAGAATGTGCAAAGATGCCGGCATTGGTTTG  399

seq1  ATGACAGGAAATGAAAGTTCAGTCCAGAAGGACACGCTTTCCTGAGAGGA  450
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  ATGACAGGAAATGAAAGTTCATTCCTGAAGGACACGCTTTCCTGAGAGGA  449

seq1  AGGCGATAGTCGTTGCTACACAAGGGTGATGGTGTGTGAGCTTGAGGATT  500
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATAGTCATTGCTACACAAGGGTGATGGTGTGTGAGCTTGAGGATT  499

seq1  TACTCTTTGTCAACATCAATGAGCTCGGGTAAATGCCAAGGTAGCGCAGA  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACTCTTTGTCAACATCAATGAGCTCGGGTAAATGCCAAGGTAGCGCATA  549

seq1  TGAAAGTACCAGGATGCTAAAAAGACATTGTTCAGTCCTCTAAACTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTACCAGGATGCTAAAAAGACATTGTTCAGTCCTCTAAACTAAAC  599

seq1  ACCAAGTTCTAAATCACTGTCTTCTTTTTATTCCTTATCTGTCCTCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTCTAAATCACTGTCTTCTTTTTATTCCTTATCTGTCCTCAGTT  649

seq1  CACGGAGGCCTGTACACTCTGCTTCCCCCGCTCCTTTCTTTCTTCAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGGCCTGTACACTCTGCTTCCCCCGCTCCTTTCTTTCTTCAGGAA  699

seq1  ACTTCTGGACGAATATTGGGCAATGAGTGAGACTCTCAGCATCTCCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGACGAATATTGGGCAATGAGTGAGACTCTCAGCATCTCCACTA  749

seq1  TACACTGTCCCCAACGCCTTAGACCCATGCTGCTAACTAACCTTTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTCCCCAACGCCTTAGACCCATGCTGCTAACTAACCTTTAAAAC  799

seq1  TCAACCGTGGCAGACTATGCTTGCTCCTCTTTTGAATGGGTCTTGGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCGTGGCAGACTATGCTTGCTCCTCTTTTGAATGGGTCTTGGAGAA  849

seq1  GCCAGTT--ATTAAATGATGGTCAAGGGGAGGAGAGCAAAAGATCAG-CC  897
      |||||||   ||| ||||||||||||||||||||||| ||||||||| ||
seq2  GCCAGTTTATTTATATGATGGTCAAGGGGAGGAGAGCTAAAGATCAGCCC  899

seq1  CTGGTATACCCTTCTCGGTGCCAGCTGTGTCTTCATCTCCTCCTTGGTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATACCCTTCTCGGTGCCAGCTGTGTCTTCATCTCCTCCTTGGTTC  949

seq1  CCCTTCTGCTGAGACCCA-CCCTGGGCTGTTACCCACAAAGGCATGTAAG  996
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTTCTGCTGAGACCCAGCCCTGGGCTGTTACCCACAAAGGCATGTAAG  999

seq1  AGCAGTATC-TTACACTTTTGAAGACTGCGGGCTCCACCCTTCAAAGCTT  1045
      ||||||||| |||||||| ||| |||||| |||| |||||||  |||| |
seq2  AGCAGTATCATTACACTTCTGAGGACTGCAGGCTTCACCCTTTCAAGCGT  1049

seq1  TAAGGAGATAAATTTAGACA-TGAAACAGGAAGTAATCTCTATGTGAC  1092
      | | || |  ||  |||||| |||||||||||||||||||||||||||
seq2  TTACGAAAATAACCTAGACATTGAAACAGGAAGTAATCTCTATGTGAC  1097