BAC Information

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BAC

Clone NameB6Ng01-320L08
Chromosome2 (Build37)
Map Location 132,513,024 - 132,644,811
singlet/doubletdoublet
Overlap geneLOC668906, Chgb, 3300001M20Rik, Mcm8
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801
Downstream geneCrls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320L08.bB6Ng01-320L08.g
ACCGA110009GA110010
length1,063548
definitionB6Ng01-320L08.b B6Ng01-320L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,513,024 - 132,514,093)(132,644,258 - 132,644,811)
sequence
gaattcactatgtcgatcaggctggcctcgaacttacaaatagatcctcc
ttcctatgctggcattaaaggcgtgggctaccaggggtctattataattt
taaacagcagtattagtaacttgatgtttccataaaaatcaaaagtgtaa
actacagtctgttttgtacgttagcctaattgtgcacttgtgataaccct
ggactgttctcatcacgccaaggaaaactatttattgaggaacacagtcc
agaaccagagagcttcgctccgcccaccacttgcccctaccccagtcctg
ggctatgaccagagtgctgtctgtctctagggttgtttaatttgcattgt
atataaacggaatcaaaaaagtatgtggctagattcttggggcagggatt
tgcaaagcttgttttggggacttgagagaattgcattccatggatgactt
aacaatgcctatctttatggaatcgtattgcatattcttatttttatgtt
gaaaaggaccttcctgtctgttttctgaatttctccatcaattgcccatc
agtgtgattctactttgggacttacctttctctttcacttctatgtcttt
gtgtcaatattcttgtcttcattccaggatctccatcacatctgacttgc
actatttgttttgttttgtagggatagtttgggcattagtaacatcatat
tttattttttattttgttatgttttattttagtttatttttaggacaggg
tctcactatgtagctctggctggccaggaactcactatgtagttcagtgg
gctctaaacatacagagctgggcttatgtctgctagaactaaaggcatgg
gccaccacccctgcgaatagcaccatcttaagatactggcttctggtgca
cgaacaaggaaggtcttccatttcttagtgcatatttaacatctgtgcat
atttatacagccgtgtttcatttctgtgcccttacaatgggaaaagttct
taatttttctttgagtgtatcacttgtctaaaaataacaagtgatttgtg
tatgtgttggtct
catctttaataatctaaaaatcactttacagtggtatgagctagctacca
gggtgatgatgaaaatggtgtggctgatgtatcctaaaggaacaaaggct
ctcctatgaaacacacctatcaaattaatagggaggggaaacgaattcat
tcacacaatgaacactaaaagtctgtcacaagacaggatccttgactaca
agcactacagtacactggagagggaaaacccccagctacaaataaaggca
agaacaaaaccatgcttcataagagatatgagagacgtcaataccgtaag
aaaacagaaaaccaacatctgcacactttacaaacatcgagtgccatcta
atccttggcaagaagcctattactatgtcctgatgtctgactgtcatctt
tgcccaaattcctattcaatcattagttcagccaattgaggacactggga
ggtctggaaggttgcaagaaactattcttgtttttctttttttcttcttc
ttcttgtaagatttacttttatgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_132513024_132514093
seq2: B6Ng01-320L08.b_45_1107

seq1  GAATTCACTATGTCGATCAGGCTGGCCTCGAACTTACAAATAGATCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTCGATCAGGCTGGCCTCGAACTTACAAATAGATCCTCC  50

seq1  TTCCTATGCTGGCATTAAAGGCGTGGGCTACCAGGGGTCTATTATAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGCTGGCATTAAAGGCGTGGGCTACCAGGGGTCTATTATAATTT  100

seq1  TAAACAGCAGTATTAGTAACTTGATGTTTCCATAAAAATCAAAAGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCAGTATTAGTAACTTGATGTTTCCATAAAAATCAAAAGTGTAA  150

seq1  ACTACAGTCTGTTTTGTACGTTAGCCTAATTGTGCACTTGTGATAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTCTGTTTTGTACGTTAGCCTAATTGTGCACTTGTGATAACCCT  200

seq1  GGACTGTTCTCATCACGCCAAGGAAAACTATTTATTGAGGAACACAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTCTCATCACGCCAAGGAAAACTATTTATTGAGGAACACAGTCC  250

seq1  AGAACCAGAGAGCTTCGCTCCGCCCACCACTTGCCCCTACCCCAGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGAGAGCTTCGCTCCGCCCACCACTTGCCCCTACCCCAGTCCTG  300

seq1  GGCTATGACCAGAGTGCTGTCTGTCTCTAGGGTTGTTTAATTTGCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGACCAGAGTGCTGTCTGTCTCTAGGGTTGTTTAATTTGCATTGT  350

seq1  ATATAAACGGAATCAAAAAAGTATGTGGCTAGATTCTTGGGGCAGGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACGGAATCAAAAAAGTATGTGGCTAGATTCTTGGGGCAGGGATT  400

seq1  TGCAAAGCTTGTTTTGGGGACTTGAGAGAATTGCATTCCATGGATGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTTGTTTTGGGGACTTGAGAGAATTGCATTCCATGGATGACTT  450

seq1  AACAATGCCTATCTTTATGGAATCGTATTGCATATTCTTATTTTTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCCTATCTTTATGGAATCGTATTGCATATTCTTATTTTTATGTT  500

seq1  GAAAAGGACCTTCCTGTCTGTTTTCTGAATTTCTCCATCAATTGCCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACCTTCCTGTCTGTTTTCTGAATTTCTCCATCAATTGCCCATC  550

seq1  AGTGTGATTCTACTTTGGGACTTACCTTTCTCTTTCACTTCTATGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATTCTACTTTGGGACTTACCTTTCTCTTTCACTTCTATGTCTTT  600

seq1  GTGTCAATATTCTTGTCTTCATTCCAGGATCTCCATCACATCTGACTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATATTCTTGTCTTCATTCCAGGATCTCCATCACATCTGACTTGC  650

seq1  ACTATTTGTTTTGTTTTGTAGGGATAGTTTGGGCATTAGTAACATCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTTTTGTTTTGTAGGGATAGTTTGGGCATTAGTAACATCATAT  700

seq1  TTTATTTTTTATTTTGTTATGTTTTATTTTAGTTTATTTTTAGGACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTATTTTGTTATGTTTTATTTTAGTTTATTTTTAGGACAGGG  750

seq1  TCTCACTATGTAGCTCTGGCTGGCCAGGAACTCACTATGTAGTTCAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATGTAGCTCTGGCTGGCCAGGAACTCACTATGTAGTTCAGTGG  800

seq1  GCTCTAAACATACAGAGCTGGGCTTATGTCTGCTAGAACTAAAGGCATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAACATACAGAGCTGGGCTTATGTCTGCTAGAACTAAAGGCATGG  850

seq1  GCCACCACCCCTGCGAATAGCACCATCTTAAGATACTGGCTTCTGGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCCCTGCGAATAGCACCATCTTAAGATACTGGCTTCTGGTGCA  900

seq1  CGAACAAGGAAGGTCTTCCATTTCTTTAGTGCATATTTAACATCTTGTGC  950
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  CGAACAAGGAAGGTCTTCCATTTC-TTAGTGCATATTTAACATC-TGTGC  948

seq1  ATATTTAATACAGCCGTGTTTCATTTCTGTGCCCTTACAAATGGAAAAGG  1000
      |||||| ||||||||||||||||||||||||||||||| ||||| ||| |
seq2  ATATTT-ATACAGCCGTGTTTCATTTCTGTGCCCTTAC-AATGGGAAAAG  996

seq1  TTCTTAATTTTTCTTTTGAGGTTGTATCACTTGTCTAAAAAT-ACAAGTG  1049
      ||||||||||||| ||||||  |||||||||||||||||||| |||||||
seq2  TTCTTAATTTTTC-TTTGAG--TGTATCACTTGTCTAAAAATAACAAGTG  1043

seq1  ATTTGTGTATGTGTTTGGTCT  1070
      ||||||||||||| |||||||
seq2  ATTTGTGTATGTG-TTGGTCT  1063

seq1: chr2_132644258_132644811
seq2: B6Ng01-320L08.g_66_619 (reverse)

seq1  ACACACACACACACACACACACACACATAAAAGTAAATCTTACAAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACATAAAAGTAAATCTTACAAGAAGA  50

seq1  AGAAGAAAAAAAGAAAAACAAGAATAGTTTCTTGCAACCTTCCAGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAAGAAAAACAAGAATAGTTTCTTGCAACCTTCCAGACCTC  100

seq1  CCAGTGTCCTCAATTGGCTGAACTAATGATTGAATAGGAATTTGGGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCCTCAATTGGCTGAACTAATGATTGAATAGGAATTTGGGCAAA  150

seq1  GATGACAGTCAGACATCAGGACATAGTAATAGGCTTCTTGCCAAGGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGTCAGACATCAGGACATAGTAATAGGCTTCTTGCCAAGGATTA  200

seq1  GATGGCACTCGATGTTTGTAAAGTGTGCAGATGTTGGTTTTCTGTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACTCGATGTTTGTAAAGTGTGCAGATGTTGGTTTTCTGTTTTCT  250

seq1  TACGGTATTGACGTCTCTCATATCTCTTATGAAGCATGGTTTTGTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTATTGACGTCTCTCATATCTCTTATGAAGCATGGTTTTGTTCTTG  300

seq1  CCTTTATTTGTAGCTGGGGGTTTTCCCTCTCCAGTGTACTGTAGTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTGTAGCTGGGGGTTTTCCCTCTCCAGTGTACTGTAGTGCTTG  350

seq1  TAGTCAAGGATCCTGTCTTGTGACAGACTTTTAGTGTTCATTGTGTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAGGATCCTGTCTTGTGACAGACTTTTAGTGTTCATTGTGTGAAT  400

seq1  GAATTCGTTTCCCCTCCCTATTAATTTGATAGGTGTGTTTCATAGGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCGTTTCCCCTCCCTATTAATTTGATAGGTGTGTTTCATAGGAGAG  450

seq1  CCTTTGTTCCTTTAGGATACATCAGCCACACCATTTTCATCATCACCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCCTTTAGGATACATCAGCCACACCATTTTCATCATCACCCTG  500

seq1  GTAGCTAGCTCATACCACTGTAAAGTGATTTTTAGATTATTAAAGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAGCTCATACCACTGTAAAGTGATTTTTAGATTATTAAAGATGGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554