BAC Information

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BAC

Clone NameB6Ng01-321B13
Chromosome2 (Build37)
Map Location 144,875,254 - 145,015,828
singlet/doubletdoublet
Overlap genenone
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321B13.bB6Ng01-321B13.g
ACCGA110296GA110297
length1,2081,178
definitionB6Ng01-321B13.b B6Ng01-321B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,875,254 - 144,876,462)(145,014,641 - 145,015,828)
sequence
gaattctacaccatttggcacggattccttccacttgaccttcaaaatcg
tagttgggctcttagttttcatttaaatcttttgaatgtgtaatttaaga
aataagtatcttggttctaaagaagccttttgtgctatgtttaattaagt
gtcctttgggagttctcatttgttttctgtgtaagttcatctgtcccttc
catgaactctaataagtcttgtgttctccttcttaacccacatgtctccc
ccgcagcttgctgaattttcctaacttagaggctttcaaccctggccaca
caagaacccactaaggggacattaaaaatctcagtgcctctgacacagtg
caactaattaatgaggaatttctgatagtagaacttgggcactggtagat
tttaaaactcccccgatggctctagcaaagcagcctcaggtaagcactac
cctcttaaatggtcctcattttattggcctgcttgtaggtgtcatttagc
acataaagaaaagcaagcagggaaagtcagaggctttcttcataagcaac
tgtgcctttcaagcggtacagttgttccagatggggagtagagaagagga
agtcagcaggcaagcatgccaagcagccatacataatcccagggtcccct
ctgagactccatttggcaactaaagacttagtcataatttgagctttgca
tggctcagaccatgggaataaatggaaatctttcatagtcataaatcaag
tgcattgaggatctgacatccatctatataccagcgtggatgaatctcaa
aagtgaaatcataagtgaaggaaaccagactcaaattactgcacacagaa
taattccacttatatgtcattctggaaaatatacaccatggggacagaaa
acagatctgtggtcaccaaggcttagagtcatagggagggattgggccac
agtggggcactggaggaaattgggtgatatgaaattctatatcttgattg
tcatagtggttacccattagatgcatctgtcaaaactcatagaagtgtgc
attaaaaatggcacatttgctacatgtgataaccttaactctatgggaaa
gaaaaaggaaactcatgtactcctctatttaaccaatacctctacagcct
ttcctaaagcttaggcttctcaacttttgcctatagtttcctggccctat
ccaaaaaa
gaattcattgagccatacaatctcaatggcctcgtgaaacgaacagaaaa
atcatacttacaagagtaattgtcatgaaatagaaataaacgatgaatca
ggccatgcgtgggagcaaaatgataatgttctggctgtaaattcacctga
gacagaagcctatttccaacatcatccagggggctagtagataaagaaga
atttgagccacatagtgttgtgattgtgaagacagtttaacacacaggtt
cacattttatcgatgagataactgaggacaaaatagaccttgaagaagaa
tacttccagaaagaggatagaacctcctgcctccactctctatccagtac
ttcttttctggacaatgtcactgagtttgtgagccaagtttcctatccct
ggatgtttctgtgacagacactataaagatggaagagcagaactatcctg
gccagtcctgcacaatatcaacacaaaagatttcattccccaagtctcct
aaaagaaaaactgtcttttgtgctgacgcttggagcgttcatcaggaaag
agcaccagacaaatgtgcttccggtctccccttcctcttccaccctagtc
atgccccacttcccaaaaggtaaagagcaaggaagaaaaagtcctcaagg
gacacttacagcatccagaaacccacatgagcttcccgacctggcaggac
aagatacatccatttgtgcttctcttggctcaagactaaaaaacgatgct
tttgccatctttggcaaaaacaactgtccagatctgtcttagcagggacc
ttcttctcttccctgaagactgctgtctttaactaacactgctggtttgt
acaaccacgaggaacctgcagacatcttttctccacaccagttcttcata
gctctttgcaaaattgaggcaagggttaaaatgcctttccttctgacgtg
gtcatcaatgagcagttagtgtgtaggaagccaaagcatccttcaagggg
agaagataaggaggcagagtgctctcttaccatattactggaaaggggaa
gtatgtccatggtgcaccggaaggagatgcctctgcctgataccacaagc
ctcatgccttgccttccacatgatgctaccttctcttcttgtgcaatcct
gcctcactcatctccatctgatggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_144875254_144876462
seq2: B6Ng01-321B13.b_46_1253

seq1  GAATTCTACACCATTTGGCACGGATTCCTTCCACTTGACCTTCAAAATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACCATTTGGCACGGATTCCTTCCACTTGACCTTCAAAATCG  50

seq1  TAGTTGGGCTCTTAGTTTTCATTTAAATCTTTTGAATGTGTAATTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGGCTCTTAGTTTTCATTTAAATCTTTTGAATGTGTAATTTAAGA  100

seq1  AATAAGTATCTTGGTTCTAAAGAAGCCTTTTGTGCTATGTTTAATTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATCTTGGTTCTAAAGAAGCCTTTTGTGCTATGTTTAATTAAGT  150

seq1  GTCCTTTGGGAGTTCTCATTTGTTTTCTGTGTAAGTTCATCTGTCCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGGAGTTCTCATTTGTTTTCTGTGTAAGTTCATCTGTCCCTTC  200

seq1  CATGAACTCTAATAAGTCTTGTGTTCTCCTTCTTAACCCACATGTCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTCTAATAAGTCTTGTGTTCTCCTTCTTAACCCACATGTCTCCC  250

seq1  CCGCAGCTTGCTGAATTTTCCTAACTTAGAGGCTTTCAACCCTGGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCTTGCTGAATTTTCCTAACTTAGAGGCTTTCAACCCTGGCCACA  300

seq1  CAAGAACCCACTAAGGGGACATTAAAAATCTCAGTGCCTCTGACACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCACTAAGGGGACATTAAAAATCTCAGTGCCTCTGACACAGTG  350

seq1  CAACTAATTAATGAGGAATTTCTGATAGTAGAACTTGGGCACTGGTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATTAATGAGGAATTTCTGATAGTAGAACTTGGGCACTGGTAGAT  400

seq1  TTTAAAACTCCCCCGATGGCTCTAGCAAAGCAGCCTCAGGTAAGCACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTCCCCCGATGGCTCTAGCAAAGCAGCCTCAGGTAAGCACTAC  450

seq1  CCTCTTAAATGGTCCTCATTTTATTGGCCTGCTTGTAGGTGTCATTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAATGGTCCTCATTTTATTGGCCTGCTTGTAGGTGTCATTTAGC  500

seq1  ACATAAAGAAAAGCAAGCAGGGAAAGTCAGAGGCTTTCTTCATAAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGAAAAGCAAGCAGGGAAAGTCAGAGGCTTTCTTCATAAGCAAC  550

seq1  TGTGCCTTTCAAGCGGTACAGTTGTTCCAGATGGGGAGTAGAGAAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTCAAGCGGTACAGTTGTTCCAGATGGGGAGTAGAGAAGAGGA  600

seq1  AGTCAGCAGGCAAGCATGCCAAGCAGCCATACATAATCCCAGGGTCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCAGGCAAGCATGCCAAGCAGCCATACATAATCCCAGGGTCCCCT  650

seq1  CTGAGACTCCATTTGGCAACTAAAGACTTAGTCATAATTTGAGCTTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTCCATTTGGCAACTAAAGACTTAGTCATAATTTGAGCTTTGCA  700

seq1  TGGCTCAGACCATGGGAATAAATGGAAATCTTTCATAGTCATAAATCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGACCATGGGAATAAATGGAAATCTTTCATAGTCATAAATCAAG  750

seq1  TGCATTGAGGATCTGACATCCATCTATATACCAGCGTGGATGAATCTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAGGATCTGACATCCATCTATATACCAGCGTGGATGAATCTCAA  800

seq1  AAGTGAAATCATAAGTGAAGGAAACCAGACTCAAATTACTGCACACAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATCATAAGTGAAGGAAACCAGACTCAAATTACTGCACACAGAA  850

seq1  TAATTCCACTTATATGTCATTCTGGAAAATATACACCATGGGGACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCACTTATATGTCATTCTGGAAAATATACACCATGGGGACAGAAA  900

seq1  ACAGATCTGTGGTCACCAAGGCTTAGAGTCATAGGGAGGGATT-GGCCAC  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGATCTGTGGTCACCAAGGCTTAGAGTCATAGGGAGGGATTGGGCCAC  950

seq1  AGTGGGGCACTGGAGGAAATTGGGTGATATGAAATTCTATATCTTGATTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCACTGGAGGAAATTGGGTGATATGAAATTCTATATCTTGATTG  1000

seq1  TCATAGTGGTTACCCATTAGATGCATCTGTCAAAACTCATAGAAGTGTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGGTTACCCATTAGATGCATCTGTCAAAACTCATAGAAGTGTGC  1050

seq1  ATTAAAAATGGCACATTTTGCTACATGTGAATTAAACCTTTAACTCTATT  1099
      ||||||||||||||| ||||||||||||||  |||  | ||||||||| |
seq2  ATTAAAAATGGCACA-TTTGCTACATGTGA--TAA--CCTTAACTCTA-T  1094

seq1  GGGAAAGAAAAAGAAAACTCATGTACTTCCTCTATTTA--CCATA-CTCT  1146
      ||||||||||||| |||||||||||| |||||||||||  | ||| ||||
seq2  GGGAAAGAAAAAGGAAACTCATGTAC-TCCTCTATTTAACCAATACCTCT  1143

seq1  ACAG-CTTCCTTAAAGCCTTTTGGGCTTCTCAACTTTTGCCTAT-GTTTC  1194
      |||| ||| | ||||||   || ||||||||||||||||||||| |||||
seq2  ACAGCCTTTCCTAAAGC---TTAGGCTTCTCAACTTTTGCCTATAGTTTC  1190

seq1  --TGCCATA-CCAAAAAA  1209
         ||| || ||||||||
seq2  CTGGCCCTATCCAAAAAA  1208

seq1: chr2_145014641_145015828
seq2: B6Ng01-321B13.g_68_1245 (reverse)

seq1  TTCTCCATCAGATGGAGATAGGAGTAGAGCAGGATGCCACA--GAGAGAA  48
      |||||||||||||||||||  ||||   |||||||  ||||   ||||||
seq2  TTCTCCATCAGATGGAGAT--GAGTGAGGCAGGATTGCACAAGAAGAGAA  48

seq1  GGTTAAGCAACCAATGTGGAAAGCAAAGCATGAGGCTTGTTGGTATCAGG  98
      |||  |||| |  |||||||| |||| |||||||||||| ||||||||||
seq2  GGT--AGCATC--ATGTGGAAGGCAAGGCATGAGGCTTG-TGGTATCAGG  93

seq1  CAGAGGCATCTCCTTCCGGTGCACCATGGGACATACTTCCCCTTTCCAGT  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAGGCATCTCCTTCCGGTGCACCAT-GGACATACTTCCCCTTTCCAGT  142

seq1  AATATGGTAAGAGAGCCACTCTGCCTCCCTTATCTTCTCCCCTTGAAGGA  198
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  AATATGGTAAGAGAG-CACTCTGCCT-CCTTATCTTCTCCCCTTGAAGGA  190

seq1  TGCTTTGGCTTCCTTACACACTAACTGCTCATTTGATGACCACGTCAGAA  248
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TGCTTTGGCTTCC-TACACACTAACTGCTCA-TTGATGACCACGTCAGAA  238

seq1  GGAAAGGCATTTTAACCCTTGCCTCAATTTTGCAAAGAGCTATGAAGAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCATTTTAACCCTTGCCTCAATTTTGCAAAGAGCTATGAAGAAC  288

seq1  TGGTGTGGAGAAAAGATGTCTGCAGGTTCCTCGTGGTTGTACAAACCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGAGAAAAGATGTCTGCAGGTTCCTCGTGGTTGTACAAACCAGC  338

seq1  AGTGTTAGTTAAAGACAGCAGTCTTCAGGGAAGAGAAGAAGGTCCCTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGTTAAAGACAGCAGTCTTCAGGGAAGAGAAGAAGGTCCCTGCT  388

seq1  AAGACAGATCTGGACAGTTGTTTTTGCCAAAGATGGCAAAAGCATCGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATCTGGACAGTTGTTTTTGCCAAAGATGGCAAAAGCATCGTTT  438

seq1  TTTAGTCTTGAGCCAAGAGAAGCACAAATGGATGTATCTTGTCCTGCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTTGAGCCAAGAGAAGCACAAATGGATGTATCTTGTCCTGCCAG  488

seq1  GTCGGGAAGCTCATGTGGGTTTCTGGATGCTGTAAGTGTCCCTTGAGGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGAAGCTCATGTGGGTTTCTGGATGCTGTAAGTGTCCCTTGAGGAC  538

seq1  TTTTTCTTCCTTGCTCTTTACCTTTTGGGAAGTGGGGCATGACTAGGGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCTTGCTCTTTACCTTTTGGGAAGTGGGGCATGACTAGGGTG  588

seq1  GAAGAGGAAGGGGAGACCGGAAGCACATTTGTCTGGTGCTCTTTCCTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGGGGAGACCGGAAGCACATTTGTCTGGTGCTCTTTCCTGAT  638

seq1  GAACGCTCCAAGCGTCAGCACAAAAGACAGTTTTTCTTTTAGGAGACTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCTCCAAGCGTCAGCACAAAAGACAGTTTTTCTTTTAGGAGACTTG  688

seq1  GGGAATGAAATCTTTTGTGTTGATATTGTGCAGGACTGGCCAGGATAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGAAATCTTTTGTGTTGATATTGTGCAGGACTGGCCAGGATAGTT  738

seq1  CTGCTCTTCCATCTTTATAGTGTCTGTCACAGAAACATCCAGGGATAGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCATCTTTATAGTGTCTGTCACAGAAACATCCAGGGATAGGA  788

seq1  AACTTGGCTCACAAACTCAGTGACATTGTCCAGAAAAGAAGTACTGGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCTCACAAACTCAGTGACATTGTCCAGAAAAGAAGTACTGGATA  838

seq1  GAGAGTGGAGGCAGGAGGTTCTATCCTCTTTCTGGAAGTATTCTTCTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGAGGCAGGAGGTTCTATCCTCTTTCTGGAAGTATTCTTCTTCA  888

seq1  AGGTCTATTTTGTCCTCAGTTATCTCATCGATAAAATGTGAACCTGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATTTTGTCCTCAGTTATCTCATCGATAAAATGTGAACCTGTGTG  938

seq1  TTAAACTGTCTTCACAATCACAACACTATGTGGCTCAAATTCTTCTTTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTCTTCACAATCACAACACTATGTGGCTCAAATTCTTCTTTAT  988

seq1  CTACTAGCCCCCTGGATGATGTTGGAAATAGGCTTCTGTCTCAGGTGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGCCCCCTGGATGATGTTGGAAATAGGCTTCTGTCTCAGGTGAAT  1038

seq1  TTACAGCCAGAACATTATCATTTTGCTCCCACGCATGGCCTGATTCATCG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCAGAACATTATCATTTTGCTCCCACGCATGGCCTGATTCATCG  1088

seq1  TTTATTTCTATTTCATGACAATTACTCTTGTAAGTATGATTTTTCTGTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTATTTCATGACAATTACTCTTGTAAGTATGATTTTTCTGTTC  1138

seq1  GTTTCACGAGGCCATTGAGATTGTATGGCTCAATGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACGAGGCCATTGAGATTGTATGGCTCAATGAATTC  1178