BAC Information

Click to search

BAC

Clone NameB6Ng01-321D18
Chromosome2 (Build37)
Map Location 145,831,903 - 145,832,446
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321D18.bB6Ng01-321D18.g
ACCGA110397GA110398
length1,1941,217
definitionB6Ng01-321D18.b B6Ng01-321D18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtctttttgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctattctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgcccaagatattttatatta
tttgtgactattgagaaggtgttgtttcctaaatttctttctcagcctgt
ttattctttgtatagagaaggccattgacttgtttgagttttatttttat
atccagctactcaccgagctgtatatcagggttagagtctctgtagaatt
ttaggtcacttaataatacttatcatatcatctgcaaggtaacttgactt
cctctttcaattggtatatccccttgaactctcccgttttgatg

gaattcaaggcccttacctaaatataataaaagcaatacacagcaaacca
tcagccaatatcaaattaaatggagagatacttgaagcaatttctctaaa
atcattgacaagacaaggctgctcactctctctatatctgtcagtagagt
actcaaagttctagctagagcaataagacaacaaaaggagattaaaggaa
tatatattggaaactaagtcaaggtataactgttacagatgatatgatac
tgtatataagagaccccaaaaaaatctaccagagaacttctacagctgac
tcaaataaatcagtagccttcctttatacaaatgataaagaggctgagaa
tgaaattagggaaacaacacccttcacaatagccacaagtagtataaagt
gtcttggtataactctaccaaggaagtgaatgatctgtatgataagaact
tcaaatccctgaaaagagaaattgaaggagacctcagaatgtccaaagac
ctcccatgatcatggaatgttaggactaacaaggtaaaacatggccatcc
tacaaaaaacaatctataggttcaatgaagtctccatcaagatcccaaca
cagttcttcacagatatggaaagaacaattcttaatttcatatggaaaaa
caaacccaagaatatgaaaaccaattctccttaataaaagaacttctgtg
caaatcaccatcctgacctcaagctgtaatacaaagcaataatgatttaa
aaaaaaaaccccacatgatattggtagagtgacagatagttctatccatg
gaattgaattgaagacccagaaataagcccacatatggacacttgatctt
tgacaaagaatccaaaaacatacaatggaaaaatgaaagtgtctttaata
aatggtgctgattcaacaggcagtctgtatgtagaaaaaatagatccata
tttaccaccatgcacaaagctcaatttcaagtggatcaaggaccttaata
taaaaccaaacacactgaactgaatagaaatgaaagtgagaaagatcctc
aactcatagcacaggggaactttcttaaacagaactcaacactcagctct
agaatcaacaatggataaattcactcatgaactgaaattttcctaaggca
aagacacagtccataggtacaattcagcaactccacacgaacctggggaa
attctctttataccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_145831903_145832446
seq2: B6Ng01-321D18.b_705_1242 (reverse)

seq1  CAACAAAA--GGAGA--TCAAGGGG--ATACAAATTGGAAAAGAGGAAGT  44
      || |||||  |||||  ||||||||  |||| |||||  |||||||||||
seq2  CATCAAAACGGGAGAGTTCAAGGGGATATACCAATTG--AAAGAGGAAGT  48

seq1  CAAAATATCACTTTTTGCAGATGATATGAT-AGTATATATAAGTGACCCT  93
      |||  || |     |||||||||||||||| |||||   |||||||||  
seq2  CAAGTTACC-----TTGCAGATGATATGATAAGTATTATTAAGTGACC--  91

seq1  AAAAATTCTACCAGAGAACTCCTAAACCTGATAAGCAGCTTCGGTGAAGT  143
       ||||||||| ||||| ||| |||| |||||||  |||| |||||| |||
seq2  TAAAATTCTA-CAGAG-ACT-CTAACCCTGATATACAGC-TCGGTG-AGT  136

seq1  AGCTGGATATAAAA--TAAACTCAAACAAGTCAATGGCCTTTCTCTATAC  191
      ||||||||||||||   |||||||||||||||||||||| ||||||||||
seq2  AGCTGGATATAAAAATAAAACTCAAACAAGTCAATGGCC-TTCTCTATAC  185

seq1  AAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAA  241
      ||||||||||||||||||||||||||||  |||||||||| |||||||||
seq2  AAAGAATAAACAGGCTGAGAAAGAAATTTAGGAAACAACA-CCTTCTCAA  234

seq1  TAGTCACAAATAGTATAAAATATCTT-GGCATAACTCTAACTAAGGAGGT  290
      |||||||||||| ||||||||||||| ||| | |||||||||||||||||
seq2  TAGTCACAAATAATATAAAATATCTTGGGCGTGACTCTAACTAAGGAGGT  284

seq1  GAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG  334

seq1  AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATC  384

seq1  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTTAATGC  440
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  434

seq1  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAA  490
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAA  484

seq1  TTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTT  540
      ||||||||||  |||||||||||||||||||||| |||||||||||||||
seq2  TTTGCAAATTTGTCTGGAATAACAAAAAACCTAGAATAGCAAAAAGTCTT  534

seq1  CTCA  544
      ||||
seq2  CTCA  538


| Home | SequenceCutter | Blast | Download |