BAC Information

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BAC

Clone NameB6Ng01-321F11
Chromosome2 (Build37)
Map Location 141,338,016 - 141,387,335
singlet/doubletdoublet
Overlap genenone
Upstream geneFlrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321F11.bB6Ng01-321F11.g
ACCGA110476GA110477
length1,1441,147
definitionB6Ng01-321F11.b B6Ng01-321F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,386,178 - 141,387,335)(141,338,016 - 141,339,173)
sequence
gaattccttacaaactgatcatcatcaaaacagcccacttacaattgatt
catgacaagggaacaatgattccataaaatcatttcccactatatgaatt
tttgaaggtcgtccaagcatgtagcctcttacaaaacacaagtccaacaa
tcacttgagtagggaagcccaatgttgctgtttgatatacactaggaggt
agataaggaggactttgggaaaccgtccaacatttttctgtgaaaacact
ttaaggactataaagaattacaaaatactaaaacctcaagacagcattac
agccccaaaatagaaatttattctaatgccagttttatgcatccatacac
gattttcagatctcctttgtagcacataattatttttctaattaactaat
tagacattttagcgggctttaagactacaaaggttaaatacataactgtt
taatggttagtgtaactaaaaaaatggtgttaataagcttggtttttcaa
acatgtttttttttcatttttccccaagaatataactttgtattaaacag
tgttttataataaatgttctggtgggtggaatgagaacagttcccaggtc
tctacttcttcagttctgcagatggaagtctaggattaccacccaattgt
gcctctgtaaacagcctgattaggaaccacagactgtaaggcaaatgcct
tagctactctggaagactgatttctttttatttcatatctgatttttatc
tcatgcttgcatctatgtatgtgtaccagatgtgtgcctgctgccctcaa
aggtcagcaaaattgattttaatgtcttgggactgaaatgatgggtgtga
gtccccatgtgggttctgggactaaacccagaacctctgcaagagtaata
aatactcttaatcactgagccatctcctctgctccacagatgggctcatt
cttgctgggctactcctgatgttaagatacaaagagactggacagattcg
agtatgtaatcttggaaggcattttcatttgcttatttacatatcattta
tgcatcatcactaatcatcattttatgctacaaactaatataggtttttt
ttttacgaatattaacttacctgtactatgtgttagggaaggat

gaattcttgggataaaaatctttgagcctcctaaccatgttcaagtattg
ttatttttatttatggtctatattttgttctttgctatatcagtgccggt
tataatgttaaatattaatgatgctgtacaacactggagaaatgacatca
acgagaccactgattggttttttgtttttgtttttgtttttttttgttgt
ttgtttgtttgttttaaggaaaccaagggagagacccataaaaacaatgg
cttattctgggcacttaatcacgtatcagtgaaactgaagttagatgcag
cccacctgactgtaatttatatcctgaaaaatgaaactctatgtagaaca
gttactaataagtaagaggaacaattaagataatgaaagaaaattccctt
gaagtctcatattgattcacgtccagctttgtgaatctgagaggtcattg
tgttggtcaataataacacttggtcttggatgctgtaaagttaatagaga
gcataaaatacagagatcgatattttgatattgggtaagctcatttatag
gttgtttgctctcagacttgtaaatgaaatggaaagcttcagaaacaaac
ctcacttcaattgataggtaaagggtttttattttgtcaccactaccagt
tctcacaggctccttccctcacaggctcctcctctcacaggctcctcccc
tcacaggctccttcccaccatgtttcttcccacagtacctctaagacctt
ttgttcttttaaatcaagtaagctcatctttcataacctcacctaagaag
cactttaaaaaaaaatctactctatttacaaatctgggagagcatgatca
cgttccttttatctaagggatattggagaaaccctgcttcaacttgttcc
taaaaacaagagtgccaaaattgccccactactttcccaaaagattaatc
acagtcttctaagagtaccatacataacacaaattccacagtcaaatgta
tttgggaataacaattctatactgccttctcagaaagcatgagtcatcaa
gggaactagtacccagagatgacctaacctagtaattggttatcttattt
tatccattagtcttactttagcctgtaaccggcacaactgtcaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141386178_141387335
seq2: B6Ng01-321F11.b_45_1188 (reverse)

seq1  ATCCTTTTCCTAACACATAGTACAGGTTTAGTTAATATTTGGTAAAAAAA  50
      |||| || |||||||||||||||||| | |||||||| || |||||||||
seq2  ATCC-TTCCCTAACACATAGTACAGG-TAAGTTAATA-TTCGTAAAAAAA  47

seq1  AAAACCCTATTATTAGTTTTGTAAGCATAAAATGAATGAATAAGTGGATG  100
      |||  |||| |||||| ||||| ||||||||||| ||| || ||| ||| 
seq2  AAA--CCTA-TATTAG-TTTGT-AGCATAAAATG-ATG-ATTAGT-GAT-  88

seq1  GATGCATAAATGAATATGTAAATAAGCAAATTGAAAATGCCTT-CAAGAT  149
      |||||||||||| ||||||||||||||||| |||||||||||| ||||||
seq2  GATGCATAAATG-ATATGTAAATAAGCAAA-TGAAAATGCCTTCCAAGAT  136

seq1  TACATACTC-AATCTGTTCCAGTCTTCTTTGTATCTTAACATCAGGAGTA  198
      ||||||||| |||||| ||||||| |||||||||||||||||||||||||
seq2  TACATACTCGAATCTG-TCCAGTC-TCTTTGTATCTTAACATCAGGAGTA  184

seq1  GCCCAGCAAGAATGAGCCCATCTGTGGAGCAGAGGAGATGGCTCAGTGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAAGAATGAGCCCATCTGTGGAGCAGAGGAGATGGCTCAGTGAT  234

seq1  TAAGAGTATTTATTACTCTTGCAGAGGTTCTGGGTTTAGTCCCAGAACCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTATTTATTACTCTTGCAGAGGTTCTGGGTTTAGTCCCAGAACCC  284

seq1  ACATGGGGACTCACACCCATCATTTCAGTCCCAAGACATTAAAATCAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGACTCACACCCATCATTTCAGTCCCAAGACATTAAAATCAATT  334

seq1  TTGCTGACCTTTGAGGGCAGCAGGCACACATCTGGTACACATACATAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACCTTTGAGGGCAGCAGGCACACATCTGGTACACATACATAGAT  384

seq1  GCAAGCATGAGATAAAAATCAGATATGAAATAAAAAGAAATCAGTCTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATGAGATAAAAATCAGATATGAAATAAAAAGAAATCAGTCTTCC  434

seq1  AGAGTAGCTAAGGCATTTGCCTTACAGTCTGTGGTTCCTAATCAGGCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCTAAGGCATTTGCCTTACAGTCTGTGGTTCCTAATCAGGCTGT  484

seq1  TTACAGAGGCACAATTGGGTGGTAATCCTAGACTTCCATCTGCAGAACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGGCACAATTGGGTGGTAATCCTAGACTTCCATCTGCAGAACTG  534

seq1  AAGAAGTAGAGACCTGGGAACTGTTCTCATTCCACCCACCAGAACATTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAGAGACCTGGGAACTGTTCTCATTCCACCCACCAGAACATTTA  584

seq1  TTATAAAACACTGTTTAATACAAAGTTATATTCTTGGGGAAAAATGAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACACTGTTTAATACAAAGTTATATTCTTGGGGAAAAATGAAAA  634

seq1  AAAAACATGTTTGAAAAACCAAGCTTATTAACACCATTTTTTTAGTTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGTTTGAAAAACCAAGCTTATTAACACCATTTTTTTAGTTACA  684

seq1  CTAACCATTAAACAGTTATGTATTTAACCTTTGTAGTCTTAAAGCCCGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATTAAACAGTTATGTATTTAACCTTTGTAGTCTTAAAGCCCGCT  734

seq1  AAAATGTCTAATTAGTTAATTAGAAAAATAATTATGTGCTACAAAGGAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTAATTAGTTAATTAGAAAAATAATTATGTGCTACAAAGGAGA  784

seq1  TCTGAAAATCGTGTATGGATGCATAAAACTGGCATTAGAATAAATTTCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATCGTGTATGGATGCATAAAACTGGCATTAGAATAAATTTCTA  834

seq1  TTTTGGGGCTGTAATGCTGTCTTGAGGTTTTAGTATTTTGTAATTCTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGCTGTAATGCTGTCTTGAGGTTTTAGTATTTTGTAATTCTTTA  884

seq1  TAGTCCTTAAAGTGTTTTCACAGAAAAATGTTGGACGGTTTCCCAAAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTAAAGTGTTTTCACAGAAAAATGTTGGACGGTTTCCCAAAGTC  934

seq1  CTCCTTATCTACCTCCTAGTGTATATCAAACAGCAACATTGGGCTTCCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATCTACCTCCTAGTGTATATCAAACAGCAACATTGGGCTTCCCT  984

seq1  ACTCAAGTGATTGTTGGACTTGTGTTTTGTAAGAGGCTACATGCTTGGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTGATTGTTGGACTTGTGTTTTGTAAGAGGCTACATGCTTGGAC  1034

seq1  GACCTTCAAAAATTCATATAGTGGGAAATGATTTTATGGAATCATTGTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAAAAATTCATATAGTGGGAAATGATTTTATGGAATCATTGTTC  1084

seq1  CCTTGTCATGAATCAATTGTAAGTGGGCTGTTTTGATGATGATCAGTTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCATGAATCAATTGTAAGTGGGCTGTTTTGATGATGATCAGTTTG  1134

seq1  TAAGGAATTC  1158
      ||||||||||
seq2  TAAGGAATTC  1144


seq1: chr2_141338016_141339173
seq2: B6Ng01-321F11.g_68_1214

seq1  GAATTCTTGGGATAAAAATCTTTGAGCCTCCTAACCATGTTCAAGTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGATAAAAATCTTTGAGCCTCCTAACCATGTTCAAGTATTG  50

seq1  TTATTTTTATTTATGGTCTATATTTTGTTCTTTGCTATATCAGTGCCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTTATGGTCTATATTTTGTTCTTTGCTATATCAGTGCCGGT  100

seq1  TATAATGTTAAATATTAATGATGCTGTACAACACTGGAGAAATGACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTTAAATATTAATGATGCTGTACAACACTGGAGAAATGACATCA  150

seq1  ACGAGACCACTGATTGGTTTTTTGTTTTTGTTTTTGTTTTTTTTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGACCACTGATTGGTTTTTTGTTTTTGTTTTTGTTTTTTTTTGTTGT  200

seq1  TTGTTTGTTTGTTTTAAGGAAACCAAGGGAGAGACCCATAAAAACAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTAAGGAAACCAAGGGAGAGACCCATAAAAACAATGG  250

seq1  CTTATTCTGGGCACTTAATCACGTATCAGTGAAACTGAAGTTAGATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTGGGCACTTAATCACGTATCAGTGAAACTGAAGTTAGATGCAG  300

seq1  CCCACCTGACTGTAATTTATATCCTGAAAAATGAAACTCTATGTAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGACTGTAATTTATATCCTGAAAAATGAAACTCTATGTAGAACA  350

seq1  GTTACTAATAAGTAAGAGGAACAATTAAGATAATGAAAGAAAATTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAATAAGTAAGAGGAACAATTAAGATAATGAAAGAAAATTCCCTT  400

seq1  GAAGTCTCATATTGATTCACGTCCAGCTTTGTGAATCTGAGAGGTCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCATATTGATTCACGTCCAGCTTTGTGAATCTGAGAGGTCATTG  450

seq1  TGTTGGTCAATAATAACACTTGGTCTTGGATGCTGTAAAGTTAATAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTCAATAATAACACTTGGTCTTGGATGCTGTAAAGTTAATAGAGA  500

seq1  GCATAAAATACAGAGATCGATATTTTGATATTGGGTAAGCTCATTTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATACAGAGATCGATATTTTGATATTGGGTAAGCTCATTTATAG  550

seq1  GTTGTTTGCTCTCAGACTTGTAAATGAAATGGAAAGCTTCAGAAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGCTCTCAGACTTGTAAATGAAATGGAAAGCTTCAGAAACAAAC  600

seq1  CTCACTTCAATTGATAGGTAAAGGGTTTTTATTTTGTCACCACTACCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCAATTGATAGGTAAAGGGTTTTTATTTTGTCACCACTACCAGT  650

seq1  TCTCACAGGCTCCTTCCCTCACAGGCTCCTCCTCTCACAGGCTCCTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGCTCCTTCCCTCACAGGCTCCTCCTCTCACAGGCTCCTCCCC  700

seq1  TCACAGGCTCCTTCCCACCATGTTTCTTCCCACAGTACCTCTAAGACC-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCACAGGCTCCTTCCCACCATGTTTCTTCCCACAGTACCTCTAAGACCTT  750

seq1  TTGTTCTTTTAAATCAAGTAAGCTCATCTTTCATAACCTCACCTAAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTAAATCAAGTAAGCTCATCTTTCATAACCTCACCTAAGAAG  800

seq1  CACTTTAAAAAAAAATCTACTCTATTTACAAATCTGGGAGAGCATGATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAAAAAAAAATCTACTCTATTTACAAATCTGGGAGAGCATGATCA  850

seq1  CGTTCC-TTTATCTAAGGGATATTGGAGAAACCCTGCTTCAACTTGTTCC  898
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  CGTTCCTTTTATCTAAGGGATATTGGAGAAACCCTGCTTCAACTTGTT-C  899

seq1  CTAAAAACAAGAGTGCCAAAATTGCCCCACTACTTTCCCAAAAGATTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAAGAGTGCCAAAATTGCCCCACTACTTTCCCAAAAGATTAAT  949

seq1  CACAGTCTTCTAAGAAGTACCATACATAACACAAATTCCAACAGTCAAAT  998
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CACAGTCTTCTAAG-AGTACCATACATAACACAAATTCC-ACAGTCAAAT  997

seq1  GTATTTGGGGAATAAC-ATTCTATAACTGCC-TCTCAGAAAGCCATGAGT  1046
      |||||| ||||||||| ||||||| |||||| |||||||||| |||||||
seq2  GTATTT-GGGAATAACAATTCTAT-ACTGCCTTCTCAGAAAG-CATGAGT  1044

seq1  CATCAGGGGACACTAAGTACCCAGAGATGACCTACACTAAAGTAATTGGT  1096
      ||||| |||| ||| |||||||||||||||||||  ||  ||||||||||
seq2  CATCAAGGGA-ACT-AGTACCCAGAGATGACCTAACCT--AGTAATTGGT  1090

seq1  GTATCTTAATTTTACCCCATAGAGTCTTACTTTTAGCCTGTACACGGCCA  1146
       |||||| |||||| ||  |  |||||||| ||||||||||| || | ||
seq2  -TATCTT-ATTTTATCCATT--AGTCTTAC-TTTAGCCTGTA-ACCGGCA  1134

seq1  CAACTG-CAACCA  1158
      |||||| ||||||
seq2  CAACTGTCAACCA  1147


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