BAC Information

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BAC

Clone NameB6Ng01-321G20
Chromosome2 (Build37)
Map Location 108,431,478 - 108,536,594
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043078, LOC668790
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321G20.bB6Ng01-321G20.g
ACCGA110534GA110535
length1,116898
definitionB6Ng01-321G20.b B6Ng01-321G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,431,478 - 108,432,596)(108,535,701 - 108,536,594)
sequence
gaattcactggctacatgaactgagatcacattgcctctgagaaaacatt
tcagcctcctccttttataggtcacttaagtcagagttacaaaaagaaaa
ctaatatttcttaccacacaaaaatgacttacatatgtttttcattagaa
tattttgatttaaatattttatagtatacataacatttttgataccagct
ttattctattgctggtagcagcggagaaaaccaaattgtagaagatttat
aagaaatatgtatcaaaataaaggatccttaatatttaggggtttatgtg
tgttgtcattagatgctaagagtctacaaaaaaacatcagcagtaggatt
atatagaaataaatgtctcaaaatcagtggtcaacagcttgccatcactc
cttgtattattgtcataaacagggggtgttgaaggtaaaattcagatcat
tttgttattaattacatgagattttttcaaaattaagactttttatctgg
gcaagaaaactttagttcctgaatttcaactaacagtaaagctaaataaa
ggagagaagtctttgttttcattacccttggtcaactaaaggtctagatt
cctgaagataaaattctaatatgatcaatggaaaagacatttaagaagtt
ctgtttttctgtctaatgctttgtggaatagcagaataagtagccaataa
aaatgctttattcaaaactaaatgcaagataaaattataagagtagtttt
acattacttctatctgtgccttttttctccacagtactccacattttgta
gtacttcacatgttgggttaataagtgagtagacatatatgaatgttgtc
tgcattgtccttcaaaaaaacttgttttcacacactcaaacatgagtagg
tcatatcatgtgacctaatcgcctttcaattatttttcttccctgattag
tttaaggtcatcattttgattattgtcatggcaacctgcatggctttatt
ctagtatttttgtgataactttttatcatactttacagattccagttttt
gctagattattcagataccaaatgcagattaaagctcaatcttattacac
cacaaaatacaatata

gaattctcctgaaaggggtaatccaatcaagcagatatgaaggggaccag
aaagagtaagctaataagatactagctaaagctcctgaaagaggaagagt
actcccagtcaagcaaggaggccagaaatcaagcctggtacccttgattg
agtgtatgtaactccttagatatcagccctgcacttctggttttcacact
gtgctagatagatttatgttgcatcagagtaaacctctaggcagaggtga
ggaaagagtgcttagagatgaaggtgggtctccatcctcttgaaattgtc
attatacttgcaactgaaaccaaaggtaggctgtagaatggggaagatgg
aacactgaacacatgggggggggggggctatggccattcctctctaggta
caacacgtatagtctttctctgagtaggcaccaaaccaaacttgatcctt
taaagaattactgtcattggctttgcataaatactcctatattctcagaa
gtggatgtgaagattcaaaggaaagaattgctgttgaaatgaatttctag
aagcatgaataattcaatgtctccatcaagggacatttatatcacctcag
cctctctaaaaaaagaaaggactggagaaagaatgagtgtttgtccatgc
tgaagaaataggaggtgtatttttataagtgatgcaatggccacaagagg
aactttgaggcaatctttcagaggagatagctcacaagtgagactgactt
ccttttctgtagaggaaaaaagtttggggacacagacaatccctactgtg
gctgactttcacttcattccttttccctattgagcatattctgtacacct
gggtattgactatagatcttgaagaaagatagcctctatgttctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108431478_108432596
seq2: B6Ng01-321G20.b_44_1159

seq1  GAATTCACTGGCTACATGAACTGAGATCACATTGCCTCTGAGAAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCTACATGAACTGAGATCACATTGCCTCTGAGAAAACATT  50

seq1  TCAGCCTCCTCCTTTTATAGGTCACTTAAGTCAGAGTTACAAAAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCTCCTTTTATAGGTCACTTAAGTCAGAGTTACAAAAAGAAAA  100

seq1  CTAATATTTCTTACCACACAAAAATGACTTACATATGTTTTTCATTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATTTCTTACCACACAAAAATGACTTACATATGTTTTTCATTAGAA  150

seq1  TATTTTGATTTAAATATTTTATAGTATACATAACATTTTTGATACCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATTTAAATATTTTATAGTATACATAACATTTTTGATACCAGCT  200

seq1  TTATTCTATTGCTGGTAGCAGCGGAGAAAACCAAATTGTAGAAGATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTATTGCTGGTAGCAGCGGAGAAAACCAAATTGTAGAAGATTTAT  250

seq1  AAGAAATATGTATCAAAATAAAGGATCCTTAATATTTAGGGGTTTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATGTATCAAAATAAAGGATCCTTAATATTTAGGGGTTTATGTG  300

seq1  TGTTGTCATTAGATGCTAAGAGTCTACAAAAAAACATCAGCAGTAGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCATTAGATGCTAAGAGTCTACAAAAAAACATCAGCAGTAGGATT  350

seq1  ATATAGAAATAAATGTCTCAAAATCAGTGGTCAACAGCTTGCCATCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAATAAATGTCTCAAAATCAGTGGTCAACAGCTTGCCATCACTC  400

seq1  CTTGTATTATTGTCATAAACAGGGGGTGTTGAAGGTAAAATTCAGATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTATTGTCATAAACAGGGGGTGTTGAAGGTAAAATTCAGATCAT  450

seq1  TTTGTTATTAATTACATGAGATTTTTTCAAAATTAAGACTTTTTATCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTAATTACATGAGATTTTTTCAAAATTAAGACTTTTTATCTGG  500

seq1  GCAAGAAAACTTTAGTTCCTGAATTTCAACTAACAGTAAAGCTAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAAACTTTAGTTCCTGAATTTCAACTAACAGTAAAGCTAAATAAA  550

seq1  GGAGAGAAGTCTTTGTTTTCATTACCCTTGGTCAACTAAAGGTCTAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGTCTTTGTTTTCATTACCCTTGGTCAACTAAAGGTCTAGATT  600

seq1  CCTGAAGATAAAATTCTAATATGATCAATGGAAAAGACATTTAAGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGATAAAATTCTAATATGATCAATGGAAAAGACATTTAAGAAGTT  650

seq1  CTGTTTTTCTGTCTAATGCTTTGTGGAATAGCAGAATAAGTAGCCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTCTGTCTAATGCTTTGTGGAATAGCAGAATAAGTAGCCAATAA  700

seq1  AAATGCTTTATTCAAAACTAAATGCAAGATAAAATTATAAGAGTAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTATTCAAAACTAAATGCAAGATAAAATTATAAGAGTAGTTTT  750

seq1  ACATTACTTCTATCTGTGCCTTTTTTCTCCACAGTACTCCACATTTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTTCTATCTGTGCCTTTTTTCTCCACAGTACTCCACATTTTGTA  800

seq1  GTACTTCACATGTTGGGTTAATAAGTGAGTAGACATATATGAATGTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCACATGTTGGGTTAATAAGTGAGTAGACATATATGAATGTTGTC  850

seq1  TGCATTGTCCTTCAAAAAAACTTGTTTTCACACACTCAAACATGAGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTCCTTCAAAAAAACTTGTTTTCACACACTCAAACATGAGTAGG  900

seq1  TCATATCATGTGACCTAATCGCCTTTCAATTATTTTTCTTCCCTGATTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCATGTGACCTAATCGCCTTTCAATTATTTTTCTTCCCTGATTAG  950

seq1  TTTAAGGTCATCATTTTGATTATTGTCATGGCAACCTGCATGGCTTTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCATCATTTTGATTATTGTCATGGCAACCTGCATGGCTTTATT  1000

seq1  CTAGTA-TTTTGTGATAACTTTTTATCATTACTTTACAGATTCCAGTTTT  1049
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGTATTTTTGTGATAACTTTTTATCA-TACTTTACAGATTCCAGTTTT  1049

seq1  TGCTAGATTATTCAGATACCAAATGCAAGATTAAAGCTC-ATCTTATTAC  1098
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  TGCTAGATTATTCAGATACCAAATGC-AGATTAAAGCTCAATCTTATTAC  1098

seq1  AACCAACAAAATACCAATATA  1119
      |  | |||||||| |||||||
seq2  A--CCACAAAATA-CAATATA  1116


seq1: chr2_108535701_108536594
seq2: B6Ng01-321G20.g_66_963 (reverse)

seq1  GAGGAG-ACATAGAGGCTATCTTTTCTTC-AGATCTATAGTCAATACCCA  48
      |||||| |||||||||||||| ||||||| ||||||||||||||||||||
seq2  GAGGAGAACATAGAGGCTATC-TTTCTTCAAGATCTATAGTCAATACCCA  49

seq1  GGTGTACAG-ATATGCTCAATAGGGAAAAGGAATGAAGTGAAAGTCAGCC  97
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTACAGAATATGCTCAATAGGGAAAAGGAATGAAGTGAAAGTCAGCC  99

seq1  ACAGTAGGGATTGTCTGTGTCCCCAAACTTTTTTCCTCTACAG-AAAGGA  146
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAGTAGGGATTGTCTGTGTCCCCAAACTTTTTTCCTCTACAGAAAAGGA  149

seq1  AGTCAGTCTCACTTGTGAGCTATCTCCTCTG-AAGATTGCCTCAAAGTTC  195
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTCAGTCTCACTTGTGAGCTATCTCCTCTGAAAGATTGCCTCAAAGTTC  199

seq1  CTCTTGTGGCCATTGCATCACTTATAAAAATACACCTCCTATTTCTTCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGGCCATTGCATCACTTATAAAAATACACCTCCTATTTCTTCAG  249

seq1  CATGGACAAACACTCATTCTTTCTCCAGTCCTTTCTTTTTTTAGAGAGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAAACACTCATTCTTTCTCCAGTCCTTTCTTTTTTTAGAGAGGC  299

seq1  TGAGGTGATATAAATGTCCCTTGATGGAGACATTGAATTATTCATGCTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGATATAAATGTCCCTTGATGGAGACATTGAATTATTCATGCTTC  349

seq1  TAGAAATTCATTTCAACAGCAATTCTTTCCTTTGAATCTTCACATCCACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTCATTTCAACAGCAATTCTTTCCTTTGAATCTTCACATCCACT  399

seq1  TCTGAGAATATAGGAGTATTTATGCAAAGCCAATGACAGTAATTCTTTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATATAGGAGTATTTATGCAAAGCCAATGACAGTAATTCTTTAA  449

seq1  AGGATCAAGTTTGGTTTGGTGCCTACTCAGAGAAAGACTATACGTGTTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAGTTTGGTTTGGTGCCTACTCAGAGAAAGACTATACGTGTTGT  499

seq1  ACCTAGAGAGGAATGGCCATAGCCCCCCCCCCCCCATGTGTTCAGTGTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGAGGAATGGCCATAGCCCCCCCCCCCCCATGTGTTCAGTGTTC  549

seq1  CATCTTCCCCATTCTACAGCCTACCTTTGGTTTCAGTTGCAAGTATAATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCCCATTCTACAGCCTACCTTTGGTTTCAGTTGCAAGTATAATG  599

seq1  ACAATTTCAAGAGGATGGAGACCCACCTTCATCTCTAAGCACTCTTTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCAAGAGGATGGAGACCCACCTTCATCTCTAAGCACTCTTTCCT  649

seq1  CACCTCTGCCTAGAGGTTTACTCTGATGCAACATAAATCTATCTAGCACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCCTAGAGGTTTACTCTGATGCAACATAAATCTATCTAGCACA  699

seq1  GTGTGAAAACCAGAAGTGCAGGGCTGATATCTAAGGAGTTACATACACTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAACCAGAAGTGCAGGGCTGATATCTAAGGAGTTACATACACTC  749

seq1  AATCAAGGGTACCAGGCTTGATTTCTGGCCTCCTTGCTTGACTGGGAGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGGTACCAGGCTTGATTTCTGGCCTCCTTGCTTGACTGGGAGTA  799

seq1  CTCTTCCTCTTTCAGGAGCTTTAGCTAGTATCTTATTAGCTTACTCTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCTTTCAGGAGCTTTAGCTAGTATCTTATTAGCTTACTCTTTC  849

seq1  TGGTCCCCTTCATATCTGCTTGATTGGATTACCCCTTTCAGGAGAATTC  894
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCTTCATATCTGCTTGATTGGATTACCCCTTTCAGGAGAATTC  898


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