BAC Information

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BAC

Clone NameB6Ng01-321H12
Chromosome2 (Build37)
Map Location 16,526,369 - 16,680,818
singlet/doubletdoublet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321H12.bB6Ng01-321H12.g
ACCGA110565GA110566
length1,0631,151
definitionB6Ng01-321H12.b B6Ng01-321H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,526,369 - 16,527,438)(16,679,665 - 16,680,818)
sequence
gaattctattatttaaaagtgcagtgttagaatccagatatggtgatatc
tgtctgttatactgcaaaggccaatctgggcaaatgtagcatcttctaga
gcaacctttgatatataatgaggccctagtaaattaaaaaaaaaaatagt
gttttctgtagtcattaattccatgaacattttacatcccctatttatat
ttactaaatactgacactggggggctggtgagatggctcagtgggtaaga
gcacccgactgctcttccaaaggtcaggagttcaaatcccagcaaccaca
tggtggctcacaaccatccctaacgagatctgactccctcttctagagtg
tctgaggacagctacagtgtacttgcatataataaataaataaataaata
aataaataaataaataaataaatctttaaaaaaaatactgacactggggc
tagagatgaggaaatattgctcctgcagtcacagactcataagtactata
aaggtaagtgaccaaagactctgctgacctcattcacttccatagtggcg
aggagatccacaacttttatttttcataattccaattgttttttttaaaa
agccaaattacacagtagttgagcatctagacacatagaccagattcata
agttgagtagggaaaaatacagaaggtctccaggtgtatggtaccattgc
cacaaccagcatcctttgctcttggtttgttttgttttgttttaattgtt
gttattgctttcttttttctttttctcttctctttagcagagacagaaaa
cagaaaaagaccttaccaaatggcataggataatatctttaggtagaact
cacagttgatcaagaataccaccctgtgtctgcttccccctcagagtagc
caggccagttgcacaccaaactagacaggagggagggaagcttagcctgg
ccctggagagtgagtgcattgcagatcttggtcctcacatgatgtgcagc
atcacatacccaggacagcttcgaaaaactgtttcatttattggggggtt
aaggagaaagggg

gaattcaggtcctgagatatcaactttctcacagataaatcttgggggtt
atagatgaaagaaatcattcttattgatttctgggaaaagatatttcatg
tgatttttgttgcttttgtgtgtttggctggctcttagtcacagaaattg
aacagtatgtctgtagcttttaaatgaaatgagttaactggaaaagcaac
tacgtgattattagtaactcaagtccccagagccaggactcggtagtatt
aggcttggtactgtcaaagaaacatgtgagtgatggttgaggtttagact
aattgatgacatcctgtacttcaagtctatcaccagctactggtgtcact
tccagaatctgcgttcctgtgtctgaatgacctaatttgagctgaccctc
attgaatatttatttgaacacttctctgagaagtgttgaacactctgtct
gatcatacatagggatatttattgatatccctgggactcatctttcctta
ctcattattacctacatagttcatgtaccaaacttgtagactcctttcca
gctatgcctgtgttgatgggtcccaaaggcttacagttgcatgataaatg
agtgataccttaattaagacacacatattttataatgcaaaggaggcaag
agattgctgttaaaaatccatactcccttgggagaaatagtatcattgag
atgtttcagccgaattataaaatgaatacatacatcaatatctgccaagg
caatttttttttcattttaatccattagtagaatttttgaataaccattg
catgttaataaatctaagaaattagacaaagatgaatgccagattgtgat
ttgtatttcccaacccttttatcatggatagaaaataataaaatcttttg
ggtgttgaacaacgtgcttgtaaggtttaagcagatacgctttggggcat
tactactcagaaataaaaaaaatattgagaagccaatgtgatgctgtcct
acaaaatccttagaggaatttgattcgggatcaggtttggtttttttttg
ttttttttttttttttggcataatcaattgtgatggtataagcactgaaa
gccgtcaaagtatgcctggaacaaattaggccgatactggcaatctgagt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16526369_16527438
seq2: B6Ng01-321H12.b_46_1108

seq1  GAATTCTATTATTTAAAAGTGCAGTGTTAGAATCCAGATATGGTGATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTATTTAAAAGTGCAGTGTTAGAATCCAGATATGGTGATATC  50

seq1  TGTCTGTTATACTGCAAAGGCCAATCTGGGCAAATGTAGCATCTTCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTATACTGCAAAGGCCAATCTGGGCAAATGTAGCATCTTCTAGA  100

seq1  GCAACCTTTGATATATAATGAGGCCCTAGTAAATTAAAAAAAAAAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTTTGATATATAATGAGGCCCTAGTAAATTAAAAAAAAAAATAGT  150

seq1  GTTTTCTGTAGTCATTAATTCCATGAACATTTTACATCCCCTATTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTAGTCATTAATTCCATGAACATTTTACATCCCCTATTTATAT  200

seq1  TTACTAAATACTGACACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATACTGACACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGA  250

seq1  GCACCCGACTGCTCTTCCAAAGGTCAGGAGTTCAAATCCCAGCAACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGACTGCTCTTCCAAAGGTCAGGAGTTCAAATCCCAGCAACCACA  300

seq1  TGGTGGCTCACAACCATCCCTAACGAGATCTGACTCCCTCTTCTAGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCCCTAACGAGATCTGACTCCCTCTTCTAGAGTG  350

seq1  TCTGAGGACAGCTACAGTGTACTTGCATATAATAAATAAATAAATAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACAGCTACAGTGTACTTGCATATAATAAATAAATAAATAAATA  400

seq1  AATAAATAAATAAATAAATAAATCTTTAAAAAAAATACTGACACTGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATCTTTAAAAAAAATACTGACACTGGGGC  450

seq1  TAGAGATGAGGAAATATTGCTCCTGCAGTCACAGACTCATAAGTACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAGGAAATATTGCTCCTGCAGTCACAGACTCATAAGTACTATA  500

seq1  AAGGTAAGTGACCAAAGACTCTGCTGACCTCATTCACTTCCATAGTGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGTGACCAAAGACTCTGCTGACCTCATTCACTTCCATAGTGGCG  550

seq1  AGGAGATCCACAACTTTTATTTTTCATAATTCCAATTGTTTTTTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCCACAACTTTTATTTTTCATAATTCCAATTGTTTTTTTTAAAA  600

seq1  AGCCAAATTACACAGTAGTTGAGCATCTAGACACATAGACCAGATTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATTACACAGTAGTTGAGCATCTAGACACATAGACCAGATTCATA  650

seq1  AGTTGAGTAGGGAAAAATACAGAAGGTCTCCAGGTGTATGGTACCATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTAGGGAAAAATACAGAAGGTCTCCAGGTGTATGGTACCATTGC  700

seq1  CACAACCAGCATCCTTTGCTCTTGGTTTGTTTTGTTTTGTTTTAATTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAGCATCCTTTGCTCTTGGTTTGTTTTGTTTTGTTTTAATTGTT  750

seq1  GTTATTGCTTTCTTTTTTCTTTTTCTCTTCTCTTTAGCAGAGACAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTTTCTTTTTTCTTTTTCTCTTCTCTTTAGCAGAGACAGAAAA  800

seq1  CAGAAAAAGACCTTACCAAATGGCATAGGATAATATCTTTAGGTAGAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGACCTTACCAAATGGCATAGGATAATATCTTTAGGTAGAACT  850

seq1  CACAGTTGATCAAGAATACCACCCTGTGTCTGCTTCCCCCTCAGAGTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGATCAAGAATACCACCCTGTGTCTGCTTCCCCCTCAGAGTAGC  900

seq1  CAGGCCAGTTGCACACCAAACTAGACAGGAGGGAGGGAAGCTTAGCCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGTTGCACACCAAACTAGACAGGAGGGAGGGAAGCTTAGCCTGG  950

seq1  CCCTGGAGAGTGAGTGCATTGCAGGATCTTGGTCCTCACAATGAATGTGC  1000
      ||||||||||||||||||||||| ||||||||||||||| ||| ||||||
seq2  CCCTGGAGAGTGAGTGCATTGCA-GATCTTGGTCCTCAC-ATG-ATGTGC  997

seq1  AGGCAATCAACATACCCAGGAACAGCTTCGAAAAACTGGTTTCATTTATT  1050
      ||   ||| ||||||||||| |||||||||||||||| ||||||||||||
seq2  AG--CATC-ACATACCCAGG-ACAGCTTCGAAAAACT-GTTTCATTTATT  1042

seq1  -GGGGGTTAGGGAGAAAGGGG  1070
       |||||||| |||||||||||
seq2  GGGGGGTTAAGGAGAAAGGGG  1063


seq1: chr2_16679665_16680818
seq2: B6Ng01-321H12.g_67_1217 (reverse)

seq1  AACTCAGATTCCACTGTATCTGCCTAATTGTTTCCAGGCATAACTTTGAC  50
      |||||||||| | | ||||| ||||||||  |||||||||| ||||||||
seq2  AACTCAGATTGC-CAGTATCGGCCTAATTTGTTCCAGGCAT-ACTTTGAC  48

seq1  AGCATTCAGTGCCTATTACCACTACAA-TGATTATTGCAAAAAAAAAAAA  99
       || |||||||| || |||||  |||| |||||||  |  ||||||||||
seq2  GGCTTTCAGTGCTTA-TACCATCACAATTGATTATGCC--AAAAAAAAAA  95

seq1  AAAAAACAAAAAAAAACAAAACCTGATTCCCTGAATCAAATTCCTCTAAG  149
      ||||||||||||||||| |||||||||  || ||||||||||||||||||
seq2  AAAAAACAAAAAAAAACCAAACCTGAT--CCCGAATCAAATTCCTCTAAG  143

seq1  AATTTTGTAGAACAGCATCACATTGGCTTCTCAATTATTTTTTTTA-TTC  198
       ||||||||| ||||||||||||||||||||||| ||||||||||| |||
seq2  GATTTTGTAGGACAGCATCACATTGGCTTCTCAA-TATTTTTTTTATTTC  192

seq1  TGAAGTAGTAAATGCCCAAAGCGTATCTGCTTAAACCTTAC-AGCACGTT  247
      || ||||||||   ||||||||||||||||||||||||||| ||||||||
seq2  TG-AGTAGTAATGCCCCAAAGCGTATCTGCTTAAACCTTACAAGCACGTT  241

seq1  G-TCAACA-CCAAAAGATTTTATTATTTTCTATCCATGATAAAA-GGTTG  294
      | |||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  GTTCAACACCCAAAAGATTTTATTATTTTCTATCCATGATAAAAGGGTTG  291

seq1  GGAAATACAAATCACAATCTGGCATTCATCTTTGTCTAATTTCTTAGATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACAAATCACAATCTGGCATTCATCTTTGTCTAATTTCTTAGATT  341

seq1  TATTAACATGCAATGGTTATTCAAAAATTCTACTAATGGATTAAAATGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACATGCAATGGTTATTCAAAAATTCTACTAATGGATTAAAATGAA  391

seq1  AAAAAAATTGCCTTGGCAGATATTGATGTATGTATTCATTTTATAATTCG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGCCTTGGCAGATATTGATGTATGTATTCATTTTATAATTCG  441

seq1  GCTGAAACATCTCAATGATACTATTTCTCCCAAGGGAGTATGGATTTTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACATCTCAATGATACTATTTCTCCCAAGGGAGTATGGATTTTTA  491

seq1  ACAGCAATCTCTTGCCTCCTTTGCATTATAAAATATGTGTGTCTTAATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATCTCTTGCCTCCTTTGCATTATAAAATATGTGTGTCTTAATTA  541

seq1  AGGTATCACTCATTTATCATGCAACTGTAAGCCTTTGGGACCCATCAACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCACTCATTTATCATGCAACTGTAAGCCTTTGGGACCCATCAACA  591

seq1  CAGGCATAGCTGGAAAGGAGTCTACAAGTTTGGTACATGAACTATGTAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAGCTGGAAAGGAGTCTACAAGTTTGGTACATGAACTATGTAGG  641

seq1  TAATAATGAGTAAGGAAAGATGAGTCCCAGGGATATCAATAAATATCCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGAGTAAGGAAAGATGAGTCCCAGGGATATCAATAAATATCCCT  691

seq1  ATGTATGATCAGACAGAGTGTTCAACACTTCTCAGAGAAGTGTTCAAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGATCAGACAGAGTGTTCAACACTTCTCAGAGAAGTGTTCAAATA  741

seq1  AATATTCAATGAGGGTCAGCTCAAATTAGGTCATTCAGACACAGGAACGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAATGAGGGTCAGCTCAAATTAGGTCATTCAGACACAGGAACGC  791

seq1  AGATTCTGGAAGTGACACCAGTAGCTGGTGATAGACTTGAAGTACAGGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGGAAGTGACACCAGTAGCTGGTGATAGACTTGAAGTACAGGAT  841

seq1  GTCATCAATTAGTCTAAACCTCAACCATCACTCACATGTTTCTTTGACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAATTAGTCTAAACCTCAACCATCACTCACATGTTTCTTTGACAG  891

seq1  TACCAAGCCTAATACTACCGAGTCCTGGCTCTGGGGACTTGAGTTACTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCCTAATACTACCGAGTCCTGGCTCTGGGGACTTGAGTTACTAA  941

seq1  TAATCACGTAGTTGCTTTTCCAGTTAACTCATTTCATTTAAAAGCTACAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACGTAGTTGCTTTTCCAGTTAACTCATTTCATTTAAAAGCTACAG  991

seq1  ACATACTGTTCAATTTCTGTGACTAAGAGCCAGCCAAACACACAAAAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGTTCAATTTCTGTGACTAAGAGCCAGCCAAACACACAAAAGCA  1041

seq1  ACAAAAATCACATGAAATATCTTTTCCCAGAAATCAATAAGAATGATTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCACATGAAATATCTTTTCCCAGAAATCAATAAGAATGATTTC  1091

seq1  TTTCATCTATAACCCCCAAGATTTATCTGTGAGAAAGTTGATATCTCAGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTATAACCCCCAAGATTTATCTGTGAGAAAGTTGATATCTCAGG  1141

seq1  ACCTGAATTC  1154
      ||||||||||
seq2  ACCTGAATTC  1151


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