BAC Information

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BAC

Clone NameB6Ng01-321K10
Chromosome2 (Build37)
Map Location 46,236,986 - 46,379,259
singlet/doubletdoublet
Overlap geneLOC383690
Upstream geneLOC100042661, LOC100041337, LOC666604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321K10.bB6Ng01-321K10.g
ACCGA110700GA110701
length9931,096
definitionB6Ng01-321K10.b B6Ng01-321K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,236,986 - 46,237,676)(46,378,155 - 46,379,259)
sequence
gaattccttatcccctttcttgttagcttccccttgtgactggtataatc
aagtgctaccatgtcagtttcctcaaggaaaaacaaataatgagaccaaa
gggcattattgataagggaaacatgaataagacccttttttatctctcca
aagcatctacattttgtatttctacatatttatataagagactcttaaac
gcgttctcatgaccggccaggaagaacacaacaaaccagaatcttctgcg
gcaaaactttattgcttacatcttcaggagccaggagcgcaagccccaag
ccccaaaaacgaaaggcccccaaaacgaaagcgaaaccccgtccctaatt
taggagagttatccttcgcctaggacgcatcactccctgattggctgcag
cccatggccgagtaaaggcagagtacatgtagtggaaaattactcttggc
acatgcgcagattatttgtttaccacttagaacacaggatgtcagcgcca
tcttgtgacggcgaatgtgggggcggctcccaacatctccccctttcctt
ttaataagagcaataggccacccatattaatgagagtggagatagaggtc
aaatccccagtgtgcaggtaaaggagccatgtacaggattagctcttagg
ctcacaggcttttacccagagcaaccctgacctgctcccgtgtcgttttg
cctggagagaaggacacttggacactcaaccttcttgaaagatgacatgt
ctccctagaataggctcatatatgccgcagagcccttctactgcagtgct
tagccgtgcaactctctcgggctgctgaagcacactcactctatcccgtg
caatgagtctagccctcgtgggatgcaagagctgagtggccagcgaccta
ttgcctaagcatagatgaccatatatcagggaagcaccatgttctagtac
tgcaagtgcctgggcataaccaccttgtctcccctagtttggg

gaattcaggggaagtaggcagacagcccaccatgaacagttcttctttct
tctttctgacactgagacagtgtggtgtgaagtattgttgaatcacagaa
ggaatcttttgctgcaggtcatataaacattcttagatcaagaagcaagt
ttaggcccaagtcaggagaatgagaacacttaaaaatgaagagaaagaaa
gtatataaaataacgtcctaatgattaagtagctacaacccttcctgatg
ggaaagaacattgggataattgtcttatcaagtggtaaaactattttatt
ctgtcactttctaaggctgaatgtgttttttagtacagggcacattatgg
ccttaaataaacaaaacacagaacctgagccatatagcagaatgggttta
ttaatgttatttggtgatatgatttttaagcaaagaatatatttgttgag
atatgataacttttgtgatagagacaggcagatgcatatcaaatgcacac
atacatcagagggcagataagaaaatattggccttgcttccaatgagata
gaaaaaaaagatagacaattattattcatcagaaatgtggtggaaagaaa
tcagggccaggtatgtggaacctccaggaaacacagttgcaagcaagtaa
acagtaaaattttcatgcacattattgaaatgcacttgtgcttggttaac
taaataactaataaaatatatggcagctttaaaggtaaaatgttgttgat
tattacctacaaataaagggcaattgagcacatctcaaggttaataaaca
ttataattaccgggaaacaccaattttgaaagaaactcttatttctgacc
tgccttaagttcatatgctaaggttcttgcggcctgtatagtatgaacac
acacagacctcccccccacacacatacacattacctaagggtgaatgaca
ctaaacactgctctttacctagctcaagttggtaagggtatcgtgtttgt
aaaatatatccatatatatactgatatatttctacatggggcttatagtc
cttatcagaataatatatgtaagagtagagaaacatatcatttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46236986_46237676
seq2: B6Ng01-321K10.b_45_735

seq1  GAATTCCTTATCCCCTTTCTTGTTAGCTTCCCCTTGTGACTGGTATAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCCCCTTTCTTGTTAGCTTCCCCTTGTGACTGGTATAATC  50

seq1  AAGTGCTACCATGTCAGTTTCCTCAAGGAAAAACAAATAATGAGACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTACCATGTCAGTTTCCTCAAGGAAAAACAAATAATGAGACCAAA  100

seq1  GGGCATTATTGATAAGGGAAACATGAATAAGACCCTTTTTTATCTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTATTGATAAGGGAAACATGAATAAGACCCTTTTTTATCTCTCCA  150

seq1  AAGCATCTACATTTTGTATTTCTACATATTTATATAAGAGACTCTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTACATTTTGTATTTCTACATATTTATATAAGAGACTCTTAAAC  200

seq1  GCGTTCTCATGACCGGCCAGGAAGAACACAACAAACCAGAATCTTCTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTCATGACCGGCCAGGAAGAACACAACAAACCAGAATCTTCTGCG  250

seq1  GCAAAACTTTATTGCTTACATCTTCAGGAGCCAGGAGCGCAAGCCCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTTTATTGCTTACATCTTCAGGAGCCAGGAGCGCAAGCCCCAAG  300

seq1  CCCCAAAAACGAAAGGCCCCCAAAACGAAAGCGAAACCCCGTCCCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAACGAAAGGCCCCCAAAACGAAAGCGAAACCCCGTCCCTAATT  350

seq1  TAGGAGAGTTATCCTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGTTATCCTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAG  400

seq1  CCCATGGCCGAGTAAAGGCAGAGTACATGTAGTGGAAAATTACTCTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGCCGAGTAAAGGCAGAGTACATGTAGTGGAAAATTACTCTTGGC  450

seq1  ACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCA  500

seq1  TCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACATCTCCCCCTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACATCTCCCCCTTTCCTT  550

seq1  TTAATAAGAGCAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGAGCAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTC  600

seq1  AAATCCCCAGTGTGCAGGTAAAGGAGCCATGTACAGGATTAGCTCTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAGTGTGCAGGTAAAGGAGCCATGTACAGGATTAGCTCTTAGG  650

seq1  CTCACAGGCTTTTACCCAGAGCAACCCTGACCTGCTCCCGT  691
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGCTTTTACCCAGAGCAACCCTGACCTGCTCCCGT  691


seq1: chr2_46378155_46379259
seq2: B6Ng01-321K10.g_66_1161 (reverse)

seq1  TTTAAATGAATTATTGTTTCTCTAACTC-TACATATATTATTCTGAATAA  49
      |||||||||  || ||||||||| |||| |||||||||||||||| ||||
seq2  TTTAAATGA--TA-TGTTTCTCT-ACTCTTACATATATTATTCTG-ATAA  45

seq1  GGACTATAAGCCCAATTGTAGAAAATATTATCAGTATATATTATGGATAT  99
      ||||||||||||| | ||||| ||||| |||||||||||| |||||||||
seq2  GGACTATAAGCCCCA-TGTAG-AAATA-TATCAGTATATA-TATGGATAT  91

seq1  ATTTTACAAACACGATACCCTTACCAACTTGAGCTAGGTAAAGAGCAGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAAACACGATACCCTTACCAACTTGAGCTAGGTAAAGAGCAGTG  141

seq1  TTTAGTGTCATTCACCCCTTAGGTAATGTGTATGTGTGTGGGGGGGAGGT  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTCATTCA-CCCTTAGGTAATGTGTATGTGTGTGGGGGGGAGGT  190

seq1  CTGTGTGTGTTCATACTATACAGGCCGCAAGAACCTTAGCATATGAACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTTCATACTATACAGGCCGCAAGAACCTTAGCATATGAACTT  240

seq1  AAGGCAGGTCAGAAATAAGAGTTTCTTTCAAAATTGGTGTTTCCCGGTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGTCAGAAATAAGAGTTTCTTTCAAAATTGGTGTTTCCCGGTAA  290

seq1  TTATAATGTTTATTAACCTTGAGATGTGCTCAATTGCCCTTTATTTGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTTTATTAACCTTGAGATGTGCTCAATTGCCCTTTATTTGTAG  340

seq1  GTAATAATCAACAACATTTTACCTTTAAAGCTGCCATATATTTTATTAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATCAACAACATTTTACCTTTAAAGCTGCCATATATTTTATTAGT  390

seq1  TATTTAGTTAACCAAGCACAAGTGCATTTCAATAATGTGCATGAAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTTAACCAAGCACAAGTGCATTTCAATAATGTGCATGAAAATTT  440

seq1  TACTGTTTACTTGCTTGCAACTGTGTTTCCTGGAGGTTCCACATACCTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTACTTGCTTGCAACTGTGTTTCCTGGAGGTTCCACATACCTGG  490

seq1  CCCTGATTTCTTTCCACCACATTTCTGATGAATAATAATTGTCTATCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTTCTTTCCACCACATTTCTGATGAATAATAATTGTCTATCTTT  540

seq1  TTTTTCTATCTCATTGGAAGCAAGGCCAATATTTTCTTATCTGCCCTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTATCTCATTGGAAGCAAGGCCAATATTTTCTTATCTGCCCTCTG  590

seq1  ATGTATGTGTGCATTTGATATGCATCTGCCTGTCTCTATCACAAAAGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGCATTTGATATGCATCTGCCTGTCTCTATCACAAAAGTTA  640

seq1  TCATATCTCAACAAATATATTCTTTGCTTAAAAATCATATCACCAAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTCAACAAATATATTCTTTGCTTAAAAATCATATCACCAAATAA  690

seq1  CATTAATAAACCCATTCTGCTATATGGCTCAGGTTCTGTGTTTTGTTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAAACCCATTCTGCTATATGGCTCAGGTTCTGTGTTTTGTTTAT  740

seq1  TTAAGGCCATAATGTGCCCTGTACTAAAAAACACATTCAGCCTTAGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCCATAATGTGCCCTGTACTAAAAAACACATTCAGCCTTAGAAAG  790

seq1  TGACAGAATAAAATAGTTTTACCACTTGATAAGACAATTATCCCAATGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAATAAAATAGTTTTACCACTTGATAAGACAATTATCCCAATGTT  840

seq1  CTTTCCCATCAGGAAGGGTTGTAGCTACTTAATCATTAGGACGTTATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCATCAGGAAGGGTTGTAGCTACTTAATCATTAGGACGTTATTTT  890

seq1  ATATACTTTCTTTCTCTTCATTTTTAAGTGTTCTCATTCTCCTGACTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTCTTTCTCTTCATTTTTAAGTGTTCTCATTCTCCTGACTTGG  940

seq1  GCCTAAACTTGCTTCTTGATCTAAGAATGTTTATATGACCTGCAGCAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAACTTGCTTCTTGATCTAAGAATGTTTATATGACCTGCAGCAAAA  990

seq1  GATTCCTTCTGTGATTCAACAATACTTCACACCACACTGTCTCAGTGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTCTGTGATTCAACAATACTTCACACCACACTGTCTCAGTGTCA  1040

seq1  GAAAGAAGAAAGAAGAACTGTTCATGGTGGGCTGTCTGCCTACTTCCCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAAGAAGAACTGTTCATGGTGGGCTGTCTGCCTACTTCCCCT  1090

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1096


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