BAC Information

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BAC

Clone NameB6Ng01-321P12
Chromosome2 (Build37)
Map Location 92,246,895 - 92,394,788
singlet/doubletdoublet
Overlap geneCry2, Slc35c1, LOC100042775
Upstream gene1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1
Downstream geneLOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321P12.bB6Ng01-321P12.g
ACCGA110938GA110939
length4251,179
definitionB6Ng01-321P12.b B6Ng01-321P12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,246,895 - 92,247,325)(92,393,595 - 92,394,788)
sequence
ctgggcctttaggattcaaaacccgtgggcttaaaaaaattaatattatc
tgtatgttttacctgcatgcaagaccgtgcaccacgtgagtaactggtgt
tctcagaaaccagccaggattccctgcaactggagtcacagatggtttgg
gctgccactgggtgctgggaatcaaaccttgggacctttgcagaagcagc
cagtattgtctgagcggctccccagcctctgttttgtttttaactagtag
ggagtctttatattactccccaccaagactttgctttttttgtttgtttg
tttgtttgtttgtttttgagacagggtttctctgtgtatccctgcctgcc
ctggaactcactctgtagactatgctggcctctaactcagaaatccacct
gcctctgcctctcctgtgctgggat
gaattcaatgtgggggtgtaaagaaaggcaaaccaggagggacccaaatc
aaggactgttcaggttcagacactaggaacaaatggtggtccagttacca
agtggggaagagtgaagtggaaacaacttaaagaggaggcagaaagaacg
ccccaagggcagtgttttacagcagagagcctgtgaaatgcctgtcatag
acaggaaatccagtgctcaacctagacctcacagagacctgaggttagag
acaccaaactgaactgaatgggagaagatccttaacacatgctctaaact
catgtgtctgagtaagagagggtggagatgcaaagtaaaaagccctagga
cccagcctgtcctgcagaggtcaccgagacatgacgaatgggatatatag
tacgcagcacccagccctgccatctcctcagcttcatgaacatcctgttc
tacacaacaacaactgaaggctcagggctgtctcagggtcattgtgacac
ccgcagcacagccctgaccctctaagcatgtacagctaagggaactaaga
catgactcccagaaaaatggaacacttgaaattcagctccacctctcagc
cgtgaggacatccatccactcacggcagcacagcagaggagaggaacaaa
ccgctgataaaaactaacgacaccaggaaaaaaaaccacatatatatatg
tatgtatgtataaactagtagtctatgtgaagatcagtggatctttaatg
tacatgggctgcatgagatcctgcctacctgccagcttattgaatgtgta
tcctaatcaacttctgagagtctccaagtcttccaaggggttatcatttg
tccagtgacatttaacagccccgtgtaaaccaccctgaatgttgagaggt
aagagaggaggaggatgtaatgaatcacctatgatattacacactggccg
tccctctatcaaatgctattaagacagtagatgaacatcttgtggcaaca
gagtcatgagaaaggagatactctgaggcctcactaagatcgatgaagat
agcatgctggttatcttcatagtatgaacagggaacggaggacggtgtca
catggggtgtattttctaagcagttaagagggttactcatcttttcttct
ggctttcccagtccctgccttagccttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92246895_92247325
seq2: B6Ng01-321P12.b_46_476

seq1  GAATTCCTGGGCCTTTAGGATTCAAAACCCGTGGGCTTAAAAAAATTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCCTTTAGGATTCAAAACCCGTGGGCTTAAAAAAATTAAT  50

seq1  ATTATCTGTATGTTTTACCTGCATGCAAGACCGTGCACCACGTGAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTATGTTTTACCTGCATGCAAGACCGTGCACCACGTGAGTAAC  100

seq1  TGGTGTTCTCAGAAACCAGCCAGGATTCCCTGCAACTGGAGTCACAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTCAGAAACCAGCCAGGATTCCCTGCAACTGGAGTCACAGATG  150

seq1  GTTTGGGCTGCCACTGGGTGCTGGGAATCAAACCTTGGGACCTTTGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCTGCCACTGGGTGCTGGGAATCAAACCTTGGGACCTTTGCAGA  200

seq1  AGCAGCCAGTATTGTCTGAGCGGCTCCCCAGCCTCTGTTTTGTTTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGTATTGTCTGAGCGGCTCCCCAGCCTCTGTTTTGTTTTTAAC  250

seq1  TAGTAGGGAGTCTTTATATTACTCCCCACCAAGACTTTGCTTTTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGGAGTCTTTATATTACTCCCCACCAAGACTTTGCTTTTTTTGTT  300

seq1  TGTTTGTTTGTTTGTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTG  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTTTGTTTGTTTGTTTGTTTTTGAGACAGGGTTTCTCTGTGTATCCCTG  350

seq1  GCTGCCCTGGAACTCACTCTGTAGACTAGGCTGGCCTCAAACTCAGAAAT  400
       ||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CCTGCCCTGGAACTCACTCTGTAGACTATGCTGGCCTCTAACTCAGAAAT  400

seq1  CCACCTGCCTCTGCCTCTCAAGTGCTGGGAT  431
      |||||||||||||||||||  ||||||||||
seq2  CCACCTGCCTCTGCCTCTCCTGTGCTGGGAT  431

seq1: chr2_92393595_92394788
seq2: B6Ng01-321P12.g_68_1246 (reverse)

seq1  GCAAGGCTTAGGGGCAGGGGACTGGGAGAAAGGCAGAAAAGAAAAAAGAT  50
      |||||||| |  |||| ||||||||  ||||| ||||    | |||||||
seq2  GCAAGGCTAA--GGCA-GGGACTGG--GAAAGCCAGA----AGAAAAGAT  41

seq1  GAGTAAACACTCTTTAAATGGTTTTAGAAATACA-CCCATGTGACACCGT  99
      |||| ||| ||| |||| || ||  | ||||||| |||||||||||||||
seq2  GAGT-AACCCTC-TTAACTGCTTAGA-AAATACACCCCATGTGACACCGT  88

seq1  TCTCTCGTCCCTGTCATTACTATGAAGATAACTCAGCCATGCTTATCTTC  149
       |||   |||||||   ||||||||||||||| ||| ||||| |||||||
seq2  CCTCCGTTCCCTGTTCATACTATGAAGATAAC-CAG-CATGC-TATCTTC  135

seq1  ATTCGATCCTAGTGA-GCCTCAGAGTATCTCCTTTCTCATGACTCTGTTG  198
      | |||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  A-TCGATCTTAGTGAGGCCTCAGAGTATCTCCTTTCTCATGACTCTGTTG  184

seq1  CCACAAGATGTTCATCTACTTGTTCTTAATAGCATTTGATAGAGGGAC-G  247
      ||||||||||||||||||||   ||||||||||||||||||||||||| |
seq2  CCACAAGATGTTCATCTACT--GTCTTAATAGCATTTGATAGAGGGACGG  232

seq1  CCAGTGTGTAATATCATAGGTGATTCATTACATCCTCCTCCTCTCTTACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGTAATATCATAGGTGATTCATTACATCCTCCTCCTCTCTTACC  282

seq1  TCTCAACATTCAGGGTGGTTTACACGGGGCTGTTAAATGTCACTGGACAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACATTCAGGGTGGTTTACACGGGGCTGTTAAATGTCACTGGACAA  332

seq1  ATGATAACCCCTTGGAAGACTTGGAGACTCTCAGAAGTTGATTAGGATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACCCCTTGGAAGACTTGGAGACTCTCAGAAGTTGATTAGGATAC  382

seq1  ACATTCAATAAGCTGGCAGGTAGGCAGGATCTCATGCAGCCCATGTACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAATAAGCTGGCAGGTAGGCAGGATCTCATGCAGCCCATGTACAT  432

seq1  TAAAGATCCACTGATCTTCACATAGACTACTAGTTTATACATACATACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCCACTGATCTTCACATAGACTACTAGTTTATACATACATACAT  482

seq1  ATATATATGTGGTTTTTTTTCCTGGTGTCGTTAGTTTTTATCAGCGGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTGGTTTTTTTTCCTGGTGTCGTTAGTTTTTATCAGCGGTTT  532

seq1  GTTCCTCTCCTCTGCTGTGCTGCCGTGAGTGGATGGATGTCCTCACGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTCCTCTGCTGTGCTGCCGTGAGTGGATGGATGTCCTCACGGCT  582

seq1  GAGAGGTGGAGCTGAATTTCAAGTGTTCCATTTTTCTGGGAGTCATGTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGAGCTGAATTTCAAGTGTTCCATTTTTCTGGGAGTCATGTCT  632

seq1  TAGTTCCCTTAGCTGTACATGCTTAGAGGGTCAGGGCTGTGCTGCGGGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCCTTAGCTGTACATGCTTAGAGGGTCAGGGCTGTGCTGCGGGTG  682

seq1  TCACAATGACCCTGAGACAGCCCTGAGCCTTCAGTTGTTGTTGTGTAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGACCCTGAGACAGCCCTGAGCCTTCAGTTGTTGTTGTGTAGAA  732

seq1  CAGGATGTTCATGAAGCTGAGGAGATGGCAGGGCTGGGTGCTGCGTACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTTCATGAAGCTGAGGAGATGGCAGGGCTGGGTGCTGCGTACTA  782

seq1  TATATCCCATTCGTCATGTCTCGGTGACCTCTGCAGGACAGGCTGGGTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCCATTCGTCATGTCTCGGTGACCTCTGCAGGACAGGCTGGGTCC  832

seq1  TAGGGCTTTTTACTTTGCATCTCCACCCTCTCTTACTCAGACACATGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTTTTACTTTGCATCTCCACCCTCTCTTACTCAGACACATGAGT  882

seq1  TTAGAGCATGTGTTAAGGATCTTCTCCCATTCAGTTCAGTTTGGTGTCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCATGTGTTAAGGATCTTCTCCCATTCAGTTCAGTTTGGTGTCTC  932

seq1  TAACCTCAGGTCTCTGTGAGGTCTAGGTTGAGCACTGGATTTCCTGTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAGGTCTCTGTGAGGTCTAGGTTGAGCACTGGATTTCCTGTCTA  982

seq1  TGACAGGCATTTCACAGGCTCTCTGCTGTAAAACACTGCCCTTGGGGCGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGCATTTCACAGGCTCTCTGCTGTAAAACACTGCCCTTGGGGCGT  1032

seq1  TCTTTCTGCCTCCTCTTTAAGTTGTTTCCACTTCACTCTTCCCCACTTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGCCTCCTCTTTAAGTTGTTTCCACTTCACTCTTCCCCACTTGG  1082

seq1  TAACTGGACCACCATTTGTTCCTAGTGTCTGAACCTGAACAGTCCTTGAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGACCACCATTTGTTCCTAGTGTCTGAACCTGAACAGTCCTTGAT  1132

seq1  TTGGGTCCCTCCTGGTTTGCCTTTCTTTACACCCCCACATTGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCCTCCTGGTTTGCCTTTCTTTACACCCCCACATTGAATTC  1179