BAC Information

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BAC

Clone NameB6Ng01-322E02
Chromosome2 (Build37)
Map Location 153,749,887 - 153,750,958
singlet/doubletsinglet
Overlap geneRya3
Upstream geneFkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3
Downstream geneLOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322E02.bB6Ng01-322E02.g
ACCGA111145GA111146
length1,0811,176
definitionB6Ng01-322E02.b B6Ng01-322E02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgaccatcattctgggtgggattggaactgcactttgaggtca
gtgctgtgctatggcttctgtgtagttttcctgcctggctgcccggtgca
gcaggatgtaccggctggatgcctgcatctggatgcctcctcccagtgca
atcctggggcttggggcagcagtcttgcctcagccctggcttttgtgtct
gccaataattatgaccttggcaggtggcccttagtctctgaccccaactg
tagactgaagtgctgggctgaagttaccacacggggctcagtgagtgcag
ggacagggtgtgtggattttctggatgacagagaagatagggtacctggg
acttctgaccacagtcttctgactctacactgggtagcaggatggacagc
agtcaccttggccctgcaatgtctactgttcctccctcgtggtgcacttt
ctaaaggggctcacgtaagagatgtgagatttggtgtcttcacaccatgc
tttacctttgagcctcagcaccacacagccattttggagagaggcagctg
tctcctgccccaagcagggtgcaccctctctctccagtggcctctgtctc
ctccttacagctgtgccctgtggtagacagtgtgctgagtgtggtgaatg
agctcttgggagctacgctgagtaagttggggtcctacccctcctctgtg
ttccctcacccttgccattgagcaggtggccatggagggaagagagggga
gtttctcttcttcctcagactgtccactccactctggggaggcctccgga
gaacccttagggtggagatctaggagaggaaccaagggaggatgtctagg
gaggagcccagctatcccaggggtgggggaggcctcagagcatccacatc
tgagatctccacctgccagctgctgcagacagacccttactgagcacttg
gggctgaaacaagaggtaaacattctctgtggagatgatagtcactagcc
tcacagggcttttagcaagacagtccatggccttgccgccctaggtgact
tctgtctcctctgccctcgtggaagacctct
gaattcattggcacatggggaaatttcctgaacaaaataccaatggcaga
ggttctaagataagcaattgacaaatagaaccttatgaaactgaaaaggt
tctgtaaggcaaaggaccctgtcaataggacaaaacagcaacctacagat
tgggaaaaaattcgatatatacaaaaaattcaagaagttagactcaagaa
aaaaaaaaaacccaagtaatccaattttaaaatgcagtgaggagctaaac
agagaattctcaaaagatgaatcttgaatgtccaagaagcacttaaagaa
atgctcaacatccttagtcaggagggaaatgcaaatcaaaacaaccctga
gattccacctcacaccagtcagagaggctaagatgaaaaactcaggtgac
agcagatgttgtcgaggatgtggagaaagaggaacactcctctattactg
gtggaaatgaaaactggtacaaactctgtaaatcaatctgacaattcctc
agaaaattgtaaatagttctgccctaagatccagctataccactcctagg
catagacccaaagatgttctatcatagcacaaggacacatgctctactat
gttcatagcagccttatttgtaatagctagaagctggaaacaatccagat
gtccctcaacggaagaatggatacagaaaatgtggttcatttacacaata
gaatactattcaactcttaaaaatgagggcatcatgaattttgtatgcaa
atggtgccccaacctacagggttaaacaatgagggtctcgagggaaggag
tgagaatggatggaacaagagactcaaaggaagaagacaaaacagagacc
ttttaaatctatttattttcgaaaacattcagtttataaagctacaaacc
acaattacaaagtggaaatcaattgcttaagtacatgacaaggtagatgg
gaaaatgctttagcacccagtgagtaaaaggaaagtctagcccacagtgt
ctaggaagtcctaaccacaaggtcctcaagctgaagtccactgcagattt
cttaacctatacctctggacagaaaacaatcctcttaaagccagagtata
ataatatggtaaaatagtaatggtccagacaagaacaagattcagcacca
acgaggttcttccccctccccaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153749887_153750958
seq2: B6Ng01-322E02.b_46_1126

seq1  GAATTCTTGACCATCATTCTGGGTGGGATTGGAACTGCACTTTGAGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACCATCATTCTGGGTGGGATTGGAACTGCACTTTGAGGTCA  50

seq1  GTGCTGTGCTATGGCTTCTGTGTAGTTTTCCTGCCTGGCTGCCCGGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGCTATGGCTTCTGTGTAGTTTTCCTGCCTGGCTGCCCGGTGCA  100

seq1  GCAGGATGTACCGGCTGGATGCCTGCATCTGGATGCCTCCTCCCAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGTACCGGCTGGATGCCTGCATCTGGATGCCTCCTCCCAGTGCA  150

seq1  ATCCTGGGGCTTGGGGCAGCAGTCTTGCCTCAGCCCTGGCTTTTGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGGCTTGGGGCAGCAGTCTTGCCTCAGCCCTGGCTTTTGTGTCT  200

seq1  GCCAATAATTATGACCTTGGCAGGTGGCCCTTAGTCTCTGACCCCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAATTATGACCTTGGCAGGTGGCCCTTAGTCTCTGACCCCAACTG  250

seq1  TAGACTGAAGTGCTGGGCTGAAGTTACCACACGGGGCTCAGTGAGTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAAGTGCTGGGCTGAAGTTACCACACGGGGCTCAGTGAGTGCAG  300

seq1  GGACAGGGTGTGTGGATTTTCTGGATGACAGAGAAGATAGGGTACCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGTGTGTGGATTTTCTGGATGACAGAGAAGATAGGGTACCTGGG  350

seq1  ACTTCTGACCACAGTCTTCTGACTCTACACTGGGTAGCAGGATGGACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACCACAGTCTTCTGACTCTACACTGGGTAGCAGGATGGACAGC  400

seq1  AGTCACCTTGGCCCTGCAATGTCTACTGTTCCTCCCTCGTGGTGCACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTTGGCCCTGCAATGTCTACTGTTCCTCCCTCGTGGTGCACTTT  450

seq1  CTAAAGGGGCTCACGTAAGAGATGTGAGATTTGGTGTCTTCACACCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGGCTCACGTAAGAGATGTGAGATTTGGTGTCTTCACACCATGC  500

seq1  TTTACCTTTGAGCCTCAGCACCACACAGCCATTTTGGAGAGAGGCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTTGAGCCTCAGCACCACACAGCCATTTTGGAGAGAGGCAGCTG  550

seq1  TCTCCTGCCCCAAGCAGGGTGCACCCTCTCTCTCCAGTGGCCTCTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCCCCAAGCAGGGTGCACCCTCTCTCTCCAGTGGCCTCTGTCTC  600

seq1  CTCCTTACAGCTGTGCCCTGTGGTAGACAGTGTGCTGAGTGTGGTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACAGCTGTGCCCTGTGGTAGACAGTGTGCTGAGTGTGGTGAATG  650

seq1  AGCTCTTGGGAGCTACGCTGAGTAAGTTGGGGTCCTACCCCTCCTCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGGGAGCTACGCTGAGTAAGTTGGGGTCCTACCCCTCCTCTGTG  700

seq1  TTCCCTCACCCTTGCCATTGAGCAGGTGGCCATGGAGGGAAGAGAGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCACCCTTGCCATTGAGCAGGTGGCCATGGAGGGAAGAGAGGGGA  750

seq1  GTTTCTCTTCTTCCTCAGACTGTCCACTCCACTCTGGGGAGGCCTCCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTCTTCCTCAGACTGTCCACTCCACTCTGGGGAGGCCTCCGGA  800

seq1  GAACCCTTAGGGTGGAGATCTAGGAGAGGAACCAAGGGAGGATGTCTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTTAGGGTGGAGATCTAGGAGAGGAACCAAGGGAGGATGTCTAGG  850

seq1  GAGGAGCCCAGCTATCCCAGGGGTGGGGGAGGCCTCAGAGCATCCACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCCCAGCTATCCCAGGGGTGGGGGAGGCCTCAGAGCATCCACATC  900

seq1  TGAGATCTCCACCTGCCAGCTGCTGCAGACAGACACCTACTGAGCACTTG  950
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  TGAGATCTCCACCTGCCAGCTGCTGCAGACAGACCCTTACTGAGCACTTG  950

seq1  GGGCTGAAACAAGAGGTAAACATTCTCTGTGGAGATGAAAGTCACAAG-C  999
      |||||||||||||||||||||||||||||||||||||| |||||| || |
seq2  GGGCTGAAACAAGAGGTAAACATTCTCTGTGGAGATGATAGTCACTAGCC  1000

seq1  TCACAGGGC-TTTAGCAAGACAG-CCATGGCCTTGCCGCCC--AGTGAC-  1044
      ||||||||| ||||||||||||| |||||||||||||||||   ||||| 
seq2  TCACAGGGCTTTTAGCAAGACAGTCCATGGCCTTGCCGCCCTAGGTGACT  1050

seq1  TCTGTCT-CTCTG-CCTCGTGG-AGACCTCT  1072
      ||||||| ||||| |||||||| ||||||||
seq2  TCTGTCTCCTCTGCCCTCGTGGAAGACCTCT  1081