BAC Information

Click to search

BAC

Clone NameB6Ng01-322H21
Chromosome2 (Build37)
Map Location 37,744,858 - 37,873,680
singlet/doubletdoublet
Overlap geneDennd1a
Upstream geneOlfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H21.bB6Ng01-322H21.g
ACCGA111320GA111321
length1,1771,220
definitionB6Ng01-322H21.b B6Ng01-322H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,872,506 - 37,873,680)(37,744,858 - 37,746,063)
sequence
gaattcaaatcccagcatccacatggtggctcacaaccatctgtaacgtg
atctgatgccctcttctgatgtgtctgaagacagctatggtgtactgatg
taccttaaataaataaatcttttttaaaaatcaatgatgcctaagatttt
atagctctggaaatgagaagataatgaagcagtgtctcaaacttctaacc
cagcattctgtacccaactaatagaattcagaagagagtccaactgcctt
ttcatacctatcaacatctggtatctgtagtctgtactgtgcctatcctt
gtgggtgaactgtcctctataaccagtcagtctgaatgtccatggacttc
gtcccacaatgtatttcaatagtcaacatcaaacaaaaatagacaaaagt
tcctgatttcctgaagcttgcatttgagtaaaggagaccttaaatcagaa
tgtacactacctataaaggcccagtagctactgagaagtacccaggaatg
gagaacagaggagacagtggagaggagtgaggaaagagatcaggattttc
tctggcatgagaaacgccttttgagaaggtgcttcttagtgcctcgttct
gcctccatgccaccttgaggaagtgctccagcagagaagcaagagcttag
ttctgcccagtctttgtttctcctctgctttcaaaagtgcacaccaaaat
gatacagagactcctaaaccataatgacaaaacatggtcagggaggtgtc
tcctaaggtaaaggcacttgctgccaaggctgataacctaaggtcagtct
tcaacactcacgtggtggtggtagaaggaaagaacttactactgcaagtt
gttctccaacctccacatgcacatatgcatgcatgcacacacatataaat
gaaaaaaaaagacagattcctgtgaatcatatccacttcatcccacttat
gttcttccctttacaccttttaatattctcccttagaacaaaattccttg
aaatcatctattttcctgtctagtctctctgctctgttcgtgccaccatt
ttactgggagtagttttgagtggagcagttgacctcattttagtaaaata
aaatgagtaaatactgccaaggtcctaggacatggtcctgctatgtaaga
atgtgtaacgtgttcctaaatcaataa
gaattccaaagcttctggaggagctttggctaaacatggctcaatagaac
agagcatgtcctcatggtgcagctaagaatggcctcagccagagcaggaa
gctagaggaacccaattgagaacactggtagtccattgccagtctctgca
ccactggcctctgtcaggagccctactctatctttgtagatattcagaga
actcctattcatcttcttggataagcccctcagtccatctattaatccta
ttattgtctcaatctttttttaaatttattttttatttatctattttttc
atgtctgtttctctaacagagcttgaggatctcagagacaaagagctgtg
tcttactcttttttaaaaatttttctttaatggtcaggaatgaacagcac
tgatcatatactgtgtaccaaagaaatgcctggtgttaataaggttaggg
gttggaagaacaagaaatagtaccaggagagttagcttccctaaggcatc
tcttctctccatgctcagagattcaaatggtccacacggctgtctcagca
ccaaaggacaaagccaccctttttttcccctataatgtagtagtgcggga
tagggatggagctcagaaggtacagtgcttgcctagcatgcctgaagccc
tgggcttgattcccagcactatctaacccaggtgatgcatgccaaatccc
agtgtgtctgtagcattggaggcaggaagctcagaagttcaaggccatac
tcataggagtttaaatcaaactggatatatcagaccctgtccaaaataaa
ataaaataaaataaaataaaatgaaataaaataaaataacaatccatgac
tgctccaagtcatcactctcttctatcatgggaggagataaagctaaaat
gagtgagaaaattaccaggtctatatggtctgagaccacaaaaggccaca
cataaatagctgtacaatgggatgactccagtatctttaagatggtcggg
agcccttctgtagagactctagcccatctcattcttccaccttctcatac
tggagctatctcgatgacccatggaccacatacggaagtacttatctgga
ggatcttaaagcgatattttttcaattgcttttatggcttccaataagta
ccatgtttccctgagtggtatacacacacttcattcttagataaattagc
cgtggttcgtaaagagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37872506_37873680
seq2: B6Ng01-322H21.b_46_1222 (reverse)

seq1  TTATTGATTTTATGAACACG-TACACATAC-TACATAGCA-GACCATGTC  47
      ||||||| |||| ||||||| ||||||| | ||||||||| |||||||||
seq2  TTATTGA-TTTAGGAACACGTTACACATTCTTACATAGCAGGACCATGTC  49

seq1  CTAAGACTTTGCAAGTATTAACTCATTTTAATTTTACTAAAATGAGGTCA  97
      ||| ||| |||  |||||| ||||||||| ||||||||||||||||||||
seq2  CTAGGACCTTGGCAGTATTTACTCATTTT-ATTTTACTAAAATGAGGTCA  98

seq1  ACTGCT-CACTCAAAACTACT-CCAGTAAAATGGT-GCACGAACAAGAGC  144
      |||||| |||||||||||||| ||||||||||||| |||||||| |||||
seq2  ACTGCTCCACTCAAAACTACTCCCAGTAAAATGGTGGCACGAAC-AGAGC  147

seq1  AGAGAGACTAGACAGG-AAATAGATGATTTTCAAGGAATTTTGTTCTAAA  193
      |||||||||||||||| |||||||||| ||||||||||||||||||||| 
seq2  AGAGAGACTAGACAGGAAAATAGATGA-TTTCAAGGAATTTTGTTCTAA-  195

seq1  GGGGAGAATATT-AAAGGTGTAAAGGGAAGAACATAAGTGGGATGAAGTG  242
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -GGGAGAATATTAAAAGGTGTAAAGGGAAGAACATAAGTGGGATGAAGTG  244

seq1  GATATGATTCACAGGAATCTGTCTTTTTTTTTCATTTATATGTGTGTGCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGATTCACAGGAATCTGTCTTTTTTTTTCATTTATATGTGTGTGCA  294

seq1  TGCATGCATATGTGCATGTGGAGGTTGGAGAACAACTTGCAGTAGTAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATATGTGCATGTGGAGGTTGGAGAACAACTTGCAGTAGTAAGT  344

seq1  TCTTTCCTTCTACCACCACCACGTGAGTGTTGAAGACTGACCTTAGGTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTCTACCACCACCACGTGAGTGTTGAAGACTGACCTTAGGTTA  394

seq1  TCAGCCTTGGCAGCAAGTGCCTTTACCTTAGGAGACACCTCCCTGACCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGGCAGCAAGTGCCTTTACCTTAGGAGACACCTCCCTGACCAT  444

seq1  GTTTTGTCATTATGGTTTAGGAGTCTCTGTATCATTTTGGTGTGCACTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCATTATGGTTTAGGAGTCTCTGTATCATTTTGGTGTGCACTTT  494

seq1  TGAAAGCAGAGGAGAAACAAAGACTGGGCAGAACTAAGCTCTTGCTTCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGAGGAGAAACAAAGACTGGGCAGAACTAAGCTCTTGCTTCTC  544

seq1  TGCTGGAGCACTTCCTCAAGGTGGCATGGAGGCAGAACGAGGCACTAAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGCACTTCCTCAAGGTGGCATGGAGGCAGAACGAGGCACTAAGA  594

seq1  AGCACCTTCTCAAAAGGCGTTTCTCATGCCAGAGAAAATCCTGATCTCTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTCTCAAAAGGCGTTTCTCATGCCAGAGAAAATCCTGATCTCTT  644

seq1  TCCTCACTCCTCTCCACTGTCTCCTCTGTTCTCCATTCCTGGGTACTTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTCCTCTCCACTGTCTCCTCTGTTCTCCATTCCTGGGTACTTCT  694

seq1  CAGTAGCTACTGGGCCTTTATAGGTAGTGTACATTCTGATTTAAGGTCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTACTGGGCCTTTATAGGTAGTGTACATTCTGATTTAAGGTCTC  744

seq1  CTTTACTCAAATGCAAGCTTCAGGAAATCAGGAACTTTTGTCTATTTTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCAAATGCAAGCTTCAGGAAATCAGGAACTTTTGTCTATTTTTG  794

seq1  TTTGATGTTGACTATTGAAATACATTGTGGGACGAAGTCCATGGACATTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTGACTATTGAAATACATTGTGGGACGAAGTCCATGGACATTC  844

seq1  AGACTGACTGGTTATAGAGGACAGTTCACCCACAAGGATAGGCACAGTAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACTGGTTATAGAGGACAGTTCACCCACAAGGATAGGCACAGTAC  894

seq1  AGACTACAGATACCAGATGTTGATAGGTATGAAAAGGCAGTTGGACTCTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAGATACCAGATGTTGATAGGTATGAAAAGGCAGTTGGACTCTC  944

seq1  TTCTGAATTCTATTAGTTGGGTACAGAATGCTGGGTTAGAAGTTTGAGAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTCTATTAGTTGGGTACAGAATGCTGGGTTAGAAGTTTGAGAC  994

seq1  ACTGCTTCATTATCTTCTCATTTCCAGAGCTATAAAATCTTAGGCATCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCATTATCTTCTCATTTCCAGAGCTATAAAATCTTAGGCATCAT  1044

seq1  TGATTTTTAAAAAAGATTTATTTATTTAAGGTACATCAGTACACCATAGC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAAAAAAGATTTATTTATTTAAGGTACATCAGTACACCATAGC  1094

seq1  TGTCTTCAGACACATCAGAAGAGGGCATCAGATCACGTTACAGATGGTTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACATCAGAAGAGGGCATCAGATCACGTTACAGATGGTTG  1144

seq1  TGAGCCACCATGTGGATGCTGGGATTTGAATTC  1175
      |||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGGATGCTGGGATTTGAATTC  1177

seq1: chr2_37744858_37746063
seq2: B6Ng01-322H21.g_66_1285

seq1  GAATTCCAAAGCTTCTGGAGGAGCTTTGGCTAAACATGGCTCAATAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGCTTCTGGAGGAGCTTTGGCTAAACATGGCTCAATAGAAC  50

seq1  AGAGCATGTCCTCATGGTGCAGCTAAGAATGGCCTCAGCCAGAGCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATGTCCTCATGGTGCAGCTAAGAATGGCCTCAGCCAGAGCAGGAA  100

seq1  GCTAGAGGAACCCAATTGAGAACACTGGTAGTCCATTGCCAGTCTCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGGAACCCAATTGAGAACACTGGTAGTCCATTGCCAGTCTCTGCA  150

seq1  CCACTGGCCTCTGTCAGGAGCCCTACTCTATCTTTGTAGATATTCAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCCTCTGTCAGGAGCCCTACTCTATCTTTGTAGATATTCAGAGA  200

seq1  ACTCCTATTCATCTTCTTGGATAAGCCCCTCAGTCCATCTATTAATCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATTCATCTTCTTGGATAAGCCCCTCAGTCCATCTATTAATCCTA  250

seq1  TTATTGTCTCAATCTTTTTTTAAATTTATTTTTTATTTATCTATTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCTCAATCTTTTTTTAAATTTATTTTTTATTTATCTATTTTTTC  300

seq1  ATGTCTGTTTCTCTAACAGAGCTTGAGGATCTCAGAGACAAAGAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTTCTCTAACAGAGCTTGAGGATCTCAGAGACAAAGAGCTGTG  350

seq1  TCTTACTCTTTTTTAAAAATTTTTCTTTAATGGTCAGGAATGAACAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTCTTTTTTAAAAATTTTTCTTTAATGGTCAGGAATGAACAGCAC  400

seq1  TGATCATATACTGTGTACCAAAGAAATGCCTGGTGTTAATAAGGTTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATATACTGTGTACCAAAGAAATGCCTGGTGTTAATAAGGTTAGGG  450

seq1  GTTGGAAGAACAAGAAATAGTACCAGGAGAGTTAGCTTCCCTAAGGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGAACAAGAAATAGTACCAGGAGAGTTAGCTTCCCTAAGGCATC  500

seq1  TCTTCTCTCCATGCTCAGAGATTCAAATGGTCCACACGGCTGTCTCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCCATGCTCAGAGATTCAAATGGTCCACACGGCTGTCTCAGCA  550

seq1  CCAAAGGACAAAGCCACCCTTTTTTTCCCCTATAATGTAGTAGTGCGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGACAAAGCCACCCTTTTTTTCCCCTATAATGTAGTAGTGCGGGA  600

seq1  TAGGGATGGAGCTCAGAAGGTACAGTGCTTGCCTAGCATGCCTGAAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGGAGCTCAGAAGGTACAGTGCTTGCCTAGCATGCCTGAAGCCC  650

seq1  TGGGCTTGATTCCCAGCACTATCTAACCCAGGTGATGCATGCCAAATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGATTCCCAGCACTATCTAACCCAGGTGATGCATGCCAAATCCC  700

seq1  AGTGTGTCTGTAGCATTGGAGGCAGGAAGCTCAGAAGTTCAAGGCCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCTGTAGCATTGGAGGCAGGAAGCTCAGAAGTTCAAGGCCATAC  750

seq1  TCATAGGAGTTTAAATCAAACTGGATATATCAGACCCTGTCCAAAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAGTTTAAATCAAACTGGATATATCAGACCCTGTCCAAAATAAA  800

seq1  ATAAAATAAAATAAAATAAAATGAAATAAAATAAAATAACAATCCATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAATAAAATAAAATGAAATAAAATAAAATAACAATCCATGAC  850

seq1  TGCTCCAAGTCATCACTCTCTTCTATCATGGGAGGAGATAAAAGCTAAAA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCTCCAAGTCATCACTCTCTTCTATCATGGGAGGAGAT-AAAGCTAAAA  899

seq1  TGAGTGAGAAAATTACCAGGTCTATATGGTCTGAGACCACAAAAGGCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGAAAATTACCAGGTCTATATGGTCTGAGACCACAAAAGGCCAC  949

seq1  ACATAAATAGCTGTACAATGGGATGACTCCAGTATCTTTAAAGATGGTCG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACATAAATAGCTGTACAATGGGATGACTCCAGTATCTTT-AAGATGGTCG  998

seq1  GGAGCCCTTCTGTTAGAGACTCTAGCCCATCTCATTCTTCCACCTTCTCA  1050
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTTCTG-TAGAGACTCTAGCCCATCTCATTCTTCCACCTTCTCA  1047

seq1  TACT-GAGCTATCTCGATGACCCATG--ACACATACGGAAAGTAACTATC  1097
      |||| |||||||||||||||||||||   ||||||||| |||||  ||||
seq2  TACTGGAGCTATCTCGATGACCCATGGACCACATACGG-AAGTACTTATC  1096

seq1  T-GAGGATCTTAAAGCGATA-TTTTTCTATTGTTTTAATGGC-TCCAATA  1144
      | |||||||||||||||||| |||||| |||| ||| ||||| |||||||
seq2  TGGAGGATCTTAAAGCGATATTTTTTCAATTGCTTTTATGGCTTCCAATA  1146

seq1  AGGGCACCAT-TGTTCCTGAGTGGTAT--ACACACTTCATTCT---AGTA  1188
      |  | ||||| | | ||||||||||||  ||||||||||||||   |  |
seq2  A--GTACCATGTTTCCCTGAGTGGTATACACACACTTCATTCTTAGATAA  1194

seq1  ATTAGCTGT--------CAGAGAGGA  1206
      |||||| ||         ||||||||
seq2  ATTAGCCGTGGTTCGTAAAGAGAGGA  1220