BAC Information

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BAC

Clone NameB6Ng01-322L22
Chromosome2 (Build37)
Map Location 96,551,976 - 96,719,073
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322L22.bB6Ng01-322L22.g
ACCGA111508GA111509
length1,1371,071
definitionB6Ng01-322L22.b B6Ng01-322L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,551,976 - 96,552,891)(96,717,991 - 96,719,073)
sequence
gaattctttgttcaattctgagccccattttttaatggggttatttgatt
ttctggagtccaccctcttcagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatactttcccaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttgcagaagctttgcagtttca
tgaggtcctatttgtctattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctatgcccatatcttcgaggcttttccccac
tttctcctctatacgtttcagtgtgtctggctttatgtgaagttccttga
tccacttcttcaacgaattagaaagagcaatctgcaaattcatctggaat
aacaaaaaacctaggatagcaaaaacttttctcaaggataaaagaacctc
tggtggaatcaccacccctgacctaaagctttactacagagcaattgtga
taaaagctgcgtggtactggtatagtgacagacaagtagaccaatggaat
agaattgaagacccagaaattaacccacacacctatggccacttgatctt
cgacaagggagctaaaaccatccagtggaagaaagacagcattttcaaca
aatggtgctggcacaactggttgttttcatgtagaagaatgcgaatcgat
ccattcctatctcattgtactaacatttatttttaaatagagtcagcctc
attactatgcattgaagttgttggtgggcgtggcaattccatgatcagct
ttttatggaaaatttcattttcaaagtgattgcaatgttttactttctta
cgaatacttcctattgataattgattggttgatttatttatgttatcgtg
gatatgaagatgaattatatcaaagatccctatttattcactgggcaatt
cctatattctcagacaactgatattcacattttttcagaagtttacttct
gtattccttagttattgttgagctattaatgtctttgcatattctgaata
tagaccacatttattctgatttgagatgttttttttggtcaatgtgccat
attgcctctcactttccttggggaataatttttttaa

gaattctcttactaaacatataacttgacatttctgctgaggaagccagc
catgaagccccagatgtgctcttgttattaacaccacagtgctcgtcgat
atagatgcatactgccatgtttaacattctccatgggtgttagggaactg
atctcagttccttatgctcgggaaaacaagcagtttttttaatagaatga
gctaacaattttagtatgttaatatataagcatcatgatcactgtcccta
taacttaaaagtcatgtgcaacatccttattagtggttaaaatggtagat
attaatgtagaaggcaaaaattatttaaaaaaaaaggcttctccagagta
atgtggtgtgctttgtgtattttctcctttactacactcaaagtgctttg
taacaccacattgagaaggcaccttttcaggggttaaggcttatgcagct
ctttctatcagaattaatatggtggcaagatgcaaaggacaacagctaga
attacattagtgggtaatccaaagtgatgggtattctgatctgcatatct
gaaagcaggattagaagccagtctttcataggtttgcacctgtgaccaca
cccacctctctcctctgctgtctgagactttttttttaacgtaatcatta
gaagatgccagtctagctacctacaagggaaagggttcatagaaatccac
atgggcccctgcatttccaagaaagttcagcttgctcatgaaatgcacat
tcgcttttcaatctctcaaggaagatttaaggaaggttttgaaattctgg
tagagttggtccatgataatttgctaggcttgcctcatgctgggctaaca
ttgatttttttattaaagcctgagtgtgtagagagatgctcatgagctct
gaccagtgagaatacagggggtgaatgtaagtagcctatgcccatcacaa
gagaagtcactgtgtgcagggaaactagacatatgagataaatattttta
ttctggtttcttaccactctatatgaaaagaatcacacatttaaacagtg
tttttttttctgtacattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96551976_96552891
seq2: B6Ng01-322L22.b_269_1182

seq1  GATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTAT  50

seq1  GCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATACGTTTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATACGTTTCAGTG  100

seq1  TGTCTGGCTTTATGTGAAGTTCCTTGATCCACTTCTTCAACGAATTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGCTTTATGTGAAGTTCCTTGATCCACTTCTTCAACGAATTAGAA  150

seq1  AGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAA  200

seq1  AACTTTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCACCCCTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCACCCCTGACC  250

seq1  TAAAGCTTTACTACAGAGCAATTGTGATAAAAGCTGCGTGGTACTGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTACTACAGAGCAATTGTGATAAAAGCTGCGTGGTACTGGTAT  300

seq1  AGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATTAA  350

seq1  CCCACACACCTATGGCCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACCTATGGCCACTTGATCTTCGACAAGGGAGCTAAAACCATCC  400

seq1  AGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTG  450

seq1  TTTTCATGTAGAAGAATGCGAATCGATCCATTCCTATCTCATTGTACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTAGAAGAATGCGAATCGATCCATTCCTATCTCATTGTACTAA  500

seq1  CATTTATTTTTAAATAGAGTCAGCCTCATTACTATGCATTGAAGTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTTTAAATAGAGTCAGCCTCATTACTATGCATTGAAGTTGTTG  550

seq1  GTGGGCGTGGCAATTCCATGATCAGCTTTTTATGGAAAATTTCATTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCGTGGCAATTCCATGATCAGCTTTTTATGGAAAATTTCATTTTCA  600

seq1  AAGTGATTGCAATGTTTTACTTTCTTACGAATACTTCCTATTGATAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTGCAATGTTTTACTTTCTTACGAATACTTCCTATTGATAATTG  650

seq1  ATTGGTTGATTTATTTATGTTATCGTGGATATGAAGATGAATTATATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGATTTATTTATGTTATCGTGGATATGAAGATGAATTATATCAA  700

seq1  AGAT-CCTATTTATTCACTGGGCAATTCCTATATTCTCAGACAAACTGAT  749
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGATCCCTATTTATTCACTGGGCAATTCCTATATTCTCAGAC-AACTGAT  749

seq1  ATTCACATTTTTTCAGAAGTTTTACTTCTGTTATTCCTTAGTTATTGTTG  799
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  ATTCACATTTTTTCAGAAG-TTTACTTCTG-TATTCCTTAGTTATTGTTG  797

seq1  AGCTATTAATGTTCTTTGCATATTCTGAATATAAGACCAACATTA-TCTG  848
      ||||||||||| |||||||||||||||||||| ||||||   ||| ||||
seq2  AGCTATTAATG-TCTTTGCATATTCTGAATAT-AGACCACATTTATTCTG  845

seq1  ATTTGAGGATGTTTTTTTTGTCCATTGTG-CATATTGCCTCTTCACTTT-  896
      |||||| |||||||||||||  || |||| ||||||||||| ||||||| 
seq2  ATTTGA-GATGTTTTTTTTGGTCAATGTGCCATATTGCCTC-TCACTTTC  893

seq1  CTTGGTG-ATTATTTTTTTAA  916
      ||||| | || ||||||||||
seq2  CTTGGGGAATAATTTTTTTAA  914


seq1: chr2_96717991_96719073
seq2: B6Ng01-322L22.g_67_1137 (reverse)

seq1  TTTAATGTACAGAAAAAAAAAACACTGTTTAAAATGTTGTGATTCTCTCA  50
      |||||||||||| ||||||||||||||||| ||||| ||||||||| |  
seq2  TTTAATGTACAG-AAAAAAAAACACTGTTT-AAATG-TGTGATTCTTTTC  47

seq1  ATATAAGAAGTGTAAGGAAACCAGAAT-AAAATATTTAATCTCAATATGT  99
      |||||   ||||  | ||||||||||| ||||||||| ||||| ||||||
seq2  ATATA--GAGTGGTAAGAAACCAGAATAAAAATATTT-ATCTC-ATATGT  93

seq1  CTAGTTTCCCCTGGCACACAGTTGACTTCTCTTGTGATGGGCATAGGCTT  149
      ||||||||||   |||||||| ||||||||||||||||||||||||||| 
seq2  CTAGTTTCCC--TGCACACAG-TGACTTCTCTTGTGATGGGCATAGGCT-  139

seq1  ACCTTACATTCACCCCCTGTATTCTCACTGGTCAGAGCCTCATGAGCATC  199
        ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -ACTTACATTCACCCCCTGTATTCTCACTGGTCAGAG-CTCATGAGCATC  187

seq1  TCTCTACACACTCAGGCTTTAATAAAAAAATCAATGTTAGCCCAGCATGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACACACTCAGGCTTTAATAAAAAAATCAATGTTAGCCCAGCATGA  237

seq1  GGCAAGCCTAGCAAATTATCATGGACCAACTCTACCAGAATTTCAAAACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCTAGCAAATTATCATGGACCAACTCTACCAGAATTTCAAAACC  287

seq1  TTCCTTAAATCTTCCTTGAGAGATTGAAAAGCGAATGTGCATTTCATGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAATCTTCCTTGAGAGATTGAAAAGCGAATGTGCATTTCATGAG  337

seq1  CAAGCTGAACTTTCTTGGAAATGCAGGGGCCCATGTGGATTTCTATGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAACTTTCTTGGAAATGCAGGGGCCCATGTGGATTTCTATGAAC  387

seq1  CCTTTCCCTTGTAGGTAGCTAGACTGGCATCTTCTAATGATTACGTTAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTTGTAGGTAGCTAGACTGGCATCTTCTAATGATTACGTTAAA  437

seq1  AAAAAAGTCTCAGACAGCAGAGGAGAGAGGTGGGTGTGGTCACAGGTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTCTCAGACAGCAGAGGAGAGAGGTGGGTGTGGTCACAGGTGCA  487

seq1  AACCTATGAAAGACTGGCTTCTAATCCTGCTTTCAGATATGCAGATCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATGAAAGACTGGCTTCTAATCCTGCTTTCAGATATGCAGATCAGA  537

seq1  ATACCCATCACTTTGGATTACCCACTAATGTAATTCTAGCTGTTGTCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATCACTTTGGATTACCCACTAATGTAATTCTAGCTGTTGTCCTT  587

seq1  TGCATCTTGCCACCATATTAATTCTGATAGAAAGAGCTGCATAAGCCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTGCCACCATATTAATTCTGATAGAAAGAGCTGCATAAGCCTTA  637

seq1  ACCCCTGAAAAGGTGCCTTCTCAATGTGGTGTTACAAAGCACTTTGAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAAAAGGTGCCTTCTCAATGTGGTGTTACAAAGCACTTTGAGTG  687

seq1  TAGTAAAGGAGAAAATACACAAAGCACACCACATTACTCTGGAGAAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGGAGAAAATACACAAAGCACACCACATTACTCTGGAGAAGCCT  737

seq1  TTTTTTTTAAATAATTTTTGCCTTCTACATTAATATCTACCATTTTAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAATAATTTTTGCCTTCTACATTAATATCTACCATTTTAACC  787

seq1  ACTAATAAGGATGTTGCACATGACTTTTAAGTTATAGGGACAGTGATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAGGATGTTGCACATGACTTTTAAGTTATAGGGACAGTGATCAT  837

seq1  GATGCTTATATATTAACATACTAAAATTGTTAGCTCATTCTATTAAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTATATATTAACATACTAAAATTGTTAGCTCATTCTATTAAAAAA  887

seq1  ACTGCTTGTTTTCCCGAGCATAAGGAACTGAGATCAGTTCCCTAACACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGTTTTCCCGAGCATAAGGAACTGAGATCAGTTCCCTAACACCC  937

seq1  ATGGAGAATGTTAAACATGGCAGTATGCATCTATATCGACGAGCACTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAATGTTAAACATGGCAGTATGCATCTATATCGACGAGCACTGTG  987

seq1  GTGTTAATAACAAGAGCACATCTGGGGCTTCATGGCTGGCTTCCTCAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATAACAAGAGCACATCTGGGGCTTCATGGCTGGCTTCCTCAGCA  1037

seq1  GAAATGTCAAGTTATATGTTTAGTAAGAGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  GAAATGTCAAGTTATATGTTTAGTAAGAGAATTC  1071


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