BAC Information

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BAC

Clone NameB6Ng01-322O04
Chromosome2 (Build37)
Map Location 59,457,964 - 59,597,334
singlet/doubletdoublet
Overlap geneLOC100039016, Tanc1
Upstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322O04.bB6Ng01-322O04.g
ACCGA111609GA111610
length1,1471,083
definitionB6Ng01-322O04.b B6Ng01-322O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,596,178 - 59,597,334)(59,457,964 - 59,459,052)
sequence
gaattccagaacagccaaagctatacagagaaactctgtctcaacaaata
aacaacaaacgcaaactattaatgcatctattgaacgccacaagcattaa
catatgttatacgtatactttgacttagaagtgtgtggggtgtgatgcat
tgacttttatggcaaaaagaaaagaggcttcaatcagtttggattttctt
ttctttgtccctaatccaaagctccctctatagaaaaatcacagatgttt
aacttttaaaaagctttccaaagtcaccatgtgctcttaagtgagtttgt
ctagtgaaagtctccgattctcagccaaagcctgctcttaactattctgg
aggggtaatgtgtttgtataaaacaaaaacaaaacaaaaaaccaaggtca
actggctggcattgcatgtctcccaaacccagcgaggtcagaattcagag
gatacaagacccaagcctcaaacactgcaaatacacccaactcaactatt
tctgccacttgtatacaatttcaagaattcacattagctaaacaaacctc
tgtcaattgcccaaggggaaaaaaacctcccaaatacatttgattcagtg
aagcattcttgcaagagactctcaggtttctttcagaaatggagaatgct
acttactatgcatagtctttagggaaagatgcagacatcatggaaaaggt
actcttaccagtcgcactgggctctgagggcttggacccttctccgaacg
ggatcataactggatctcccggcaccctggggctttccacatacttgggc
ttcctgacgggacctgcagagggaaagatctgagtgtagctaattttttc
cagatgcaaacagagcttcagaacatacaatgtgtgtccttaccaggacc
caaacacgcctaaaggctggctcttccctcccttgatacataggctgtca
gttcagagcagacacaagctgccctcagttgggtggtggccacagtccga
caacagatctgggaaactggatgctgagtctatttccctctcccaaccaa
acttatcagaggatctgcactttttgtttatttttgagtcagcagcctaa
cttgacatcatccttctggcgcagcttctggagtgatcaggtatata
gaattccaggatagatagccagggctttgtagagacagctggtctctaaa
aacgttcattgagatgtactttgagtctgattggttaattctgtgtgtga
tgaatttttttttaaataattctttttttctttaagaagaaaattcttaa
agaattttaaattcttttatttattctatttctatgaatacactgtagct
ttcttcagacacacaccagaagagggcatcagatcccattacagatgggc
caccatgtggttgctgggaattgaactcaggacctctggaagagcagttg
gtgttcttaactgctgagtcatctctccagcctgaatttttgttttttat
ttgcaccccctaccccaccaccaccacccagggtttttctgtgtggccct
ggctgtcctggaactcccatctatagaacaggataggttggctttggagt
cagagatgctcctgtctctgcctcctggatgctgggattaaaggtatgca
caccacacccagcacactagtctcttcattattgcatacattatatacag
tttatactctgtttgggttatatgtttaatcttttttactgagaggtctg
tgtcatcacagaacatttgaaagtaccctttaagtcacttatacaaagca
cttttctttttttttaaaaaatgtatatgtgtgagtttttgggtgtacat
atgcactgtttgtgtacaggagcccacagaggccagaagagggtgtccga
tcctttggaacttgagttacaggtggttgtgagcgccatgtgggttctgg
gagccgtgccctggtcctctgtaagagcagtaagtcctcttagccactga
gcctccctctagtctctgtgcttccccctcccccttgttacttgcatggc
agcagtgcctggtctgaggacagttgggggcgtgtcctccattttacttg
aagctgacaagtctctacagtctagtcccttatgtttaattttcccttta
gtaacgttcttcttctcttttttccccaaactaaaaatgacattcatcct
tacatcacagcttcaaagaaaccagattctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_59596178_59597334
seq2: B6Ng01-322O04.b_49_1195 (reverse)

seq1  TATATACCTGTATTCACTCCAGAGGCTGCGGCAGAAGGATGGATGTC-AG  49
      ||||||||||   |||||||||| |||||| ||||||||| |||||| ||
seq2  TATATACCTG--ATCACTCCAGAAGCTGCGCCAGAAGGAT-GATGTCAAG  47

seq1  TTAGGCCTGCCTGACTCAAAAATAAAACAAAAGTGCCAGATCCTTCTGAT  99
      ||||| ||| ||||||||||||||||  ||||||| ||||||| ||||||
seq2  TTAGG-CTG-CTGACTCAAAAATAAACAAAAAGTG-CAGATCC-TCTGAT  93

seq1  AAGTTTTGGTTGGGAGAGGGAAATAAGACTCAGCATTCCCAG-TTCCCAG  148
      ||| |||||||||||||||||||| |||||||||||  |||| |||||||
seq2  AAG-TTTGGTTGGGAGAGGGAAAT-AGACTCAGCAT--CCAGTTTCCCAG  139

seq1  ATCTG-TGTCGGACTGTTGGCCA-CACCCAACTTGAGGGCAGCTTGTGTC  196
      ||||| |||||||||| |||||| |||||||| |||||||||||||||||
seq2  ATCTGTTGTCGGACTG-TGGCCACCACCCAAC-TGAGGGCAGCTTGTGTC  187

seq1  TGCTCTGAACTGACAGCCTATGTATTCAAGGGAGGGAAGAGCCAGCCTTT  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTCTGAACTGACAGCCTATGTA-TCAAGGGAGGGAAGAGCCAGCCTTT  236

seq1  AGGCGTGTTTGGGTCCTGGTAAGGACACACATTGTATGTTCTGAAGCTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGTTTGGGTCCTGGTAAGGACACACATTGTATGTTCTGAAGCTCT  286

seq1  GTTTGCATCTGGAAAAAATTAGCTACACTCAGATCTTTCCCTCTGCAGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATCTGGAAAAAATTAGCTACACTCAGATCTTTCCCTCTGCAGGT  336

seq1  CCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGGGTGCCGGGAGATCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCAGGAAGCCCAAGTATGTGGAAAGCCCCAGGGTGCCGGGAGATCC  386

seq1  AGTTATGATCCCGTTCGGAGAAGGGTCCAAGCCCTCAGAGCCCAGTGCGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGATCCCGTTCGGAGAAGGGTCCAAGCCCTCAGAGCCCAGTGCGA  436

seq1  CTGGTAAGAGTACCTTTTCCATGATGTCTGCATCTTTCCCTAAAGACTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGAGTACCTTTTCCATGATGTCTGCATCTTTCCCTAAAGACTAT  486

seq1  GCATAGTAAGTAGCATTCTCCATTTCTGAAAGAAACCTGAGAGTCTCTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTAAGTAGCATTCTCCATTTCTGAAAGAAACCTGAGAGTCTCTTG  536

seq1  CAAGAATGCTTCACTGAATCAAATGTATTTGGGAGGTTTTTTTCCCCTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGCTTCACTGAATCAAATGTATTTGGGAGGTTTTTTTCCCCTTG  586

seq1  GGCAATTGACAGAGGTTTGTTTAGCTAATGTGAATTCTTGAAATTGTATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGACAGAGGTTTGTTTAGCTAATGTGAATTCTTGAAATTGTATA  636

seq1  CAAGTGGCAGAAATAGTTGAGTTGGGTGTATTTGCAGTGTTTGAGGCTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCAGAAATAGTTGAGTTGGGTGTATTTGCAGTGTTTGAGGCTTG  686

seq1  GGTCTTGTATCCTCTGAATTCTGACCTCGCTGGGTTTGGGAGACATGCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTATCCTCTGAATTCTGACCTCGCTGGGTTTGGGAGACATGCAA  736

seq1  TGCCAGCCAGTTGACCTTGGTTTTTTGTTTTGTTTTTGTTTTATACAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCCAGTTGACCTTGGTTTTTTGTTTTGTTTTTGTTTTATACAAAC  786

seq1  ACATTACCCCTCCAGAATAGTTAAGAGCAGGCTTTGGCTGAGAATCGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACCCCTCCAGAATAGTTAAGAGCAGGCTTTGGCTGAGAATCGGAG  836

seq1  ACTTTCACTAGACAAACTCACTTAAGAGCACATGGTGACTTTGGAAAGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACTAGACAAACTCACTTAAGAGCACATGGTGACTTTGGAAAGCT  886

seq1  TTTTAAAAGTTAAACATCTGTGATTTTTCTATAGAGGGAGCTTTGGATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTTAAACATCTGTGATTTTTCTATAGAGGGAGCTTTGGATTA  936

seq1  GGGACAAAGAAAAGAAAATCCAAACTGATTGAAGCCTCTTTTCTTTTTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAGAAAAGAAAATCCAAACTGATTGAAGCCTCTTTTCTTTTTGC  986

seq1  CATAAAAGTCAATGCATCACACCCCACACACTTCTAAGTCAAAGTATACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTCAATGCATCACACCCCACACACTTCTAAGTCAAAGTATACG  1036

seq1  TATAACATATGTTAATGCTTGTGGCGTTCAATAGATGCATTAATAGTTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATATGTTAATGCTTGTGGCGTTCAATAGATGCATTAATAGTTTG  1086

seq1  CGTTTGTTGTTTATTTGTTGAGACAGAGTTTCTCTGTATAGCTTTGGCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGTTGTTTATTTGTTGAGACAGAGTTTCTCTGTATAGCTTTGGCTG  1136

seq1  TTCTGGAATTC  1157
      |||||||||||
seq2  TTCTGGAATTC  1147

seq1: chr2_59457964_59459052
seq2: B6Ng01-322O04.g_64_1146

seq1  GAATTCCAGGATAGATAGCCAGGGCTTTGTAGAGACAGCTGGTCTCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGATAGCCAGGGCTTTGTAGAGACAGCTGGTCTCTAAA  50

seq1  AACGTTCATTGAGATGTACTTTGAGTCTGATTGGTTAATTCTGTGTGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCATTGAGATGTACTTTGAGTCTGATTGGTTAATTCTGTGTGTGA  100

seq1  TGAATTTTTTTTTAAATAATTCTTTTTTTCTTTAAGAAGAAAATTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTTTTAAATAATTCTTTTTTTCTTTAAGAAGAAAATTCTTAA  150

seq1  AGAATTTTAAATTCTTTTATTTATTCTATTTCTATGAATACACTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTAAATTCTTTTATTTATTCTATTTCTATGAATACACTGTAGCT  200

seq1  TTCTTCAGACACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGACACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGGC  250

seq1  CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTTG  300

seq1  GTGTTCTTAACTGCTGAGTCATCTCTCCAGCCTGAATTTTTGTTTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTAACTGCTGAGTCATCTCTCCAGCCTGAATTTTTGTTTTTTAT  350

seq1  TTGCACCCCCTACCCCACCACCACCACCCAGGGTTTTTCTGTGTGGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCCCCTACCCCACCACCACCACCCAGGGTTTTTCTGTGTGGCCCT  400

seq1  GGCTGTCCTGGAACTCCCATCTATAGAACAGGATAGGTTGGCTTTGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCCCATCTATAGAACAGGATAGGTTGGCTTTGGAGT  450

seq1  CAGAGATGCTCCTGTCTCTGCCTCCTGGATGCTGGGATTAAAGGTATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGCTCCTGTCTCTGCCTCCTGGATGCTGGGATTAAAGGTATGCA  500

seq1  CACCACACCCAGCACACTAGTCTCTTCATTATTGCATACATTATATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACCCAGCACACTAGTCTCTTCATTATTGCATACATTATATACAG  550

seq1  TTTATACTCTGTTTGGGTTATATGTTTAATCTTTTTTACTGAGAGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTCTGTTTGGGTTATATGTTTAATCTTTTTTACTGAGAGGTCTG  600

seq1  TGTCATCACAGAACATTTGAAAGTACCCTTTAAGTCACTTATACAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCACAGAACATTTGAAAGTACCCTTTAAGTCACTTATACAAAGCA  650

seq1  CTTTTCTTTTTTTTTAAAAAATGTATATGTGTGAGTTTTTGGGTGTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTTTTTTAAAAAATGTATATGTGTGAGTTTTTGGGTGTACAT  700

seq1  ATGCACTGTTTGTGTACAGGAGCCCACAGAGGCCAGAAGAGGGTGTCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGTTTGTGTACAGGAGCCCACAGAGGCCAGAAGAGGGTGTCCGA  750

seq1  TCCTTTGGAACTTGAGTTACAGGTGGTTGTGAGCGCCATGTGGGTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGAACTTGAGTTACAGGTGGTTGTGAGCGCCATGTGGGTTCTGG  800

seq1  GAGCCGTGCCCTGGTCCTCTGTAAGAGCAGTAAGTCCTCTTAGCCACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTGCCCTGGTCCTCTGTAAGAGCAGTAAGTCCTCTTAGCCACTGA  850

seq1  GCCTCCCTCTAGTCTCTGTGCTTCCCCCTCCCCCTTGTTACTTGCATGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTCTAGTCTCTGTGCTTCCCCCTCCCCCTTGTTACTTGCATGGC  900

seq1  AGCAGTGCCTGGTCTGAGGACAGTTGGGGGCGGTGTCCTCCATTTTACTT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCAGTGCCTGGTCTGAGGACAGTTGGGGGC-GTGTCCTCCATTTTACTT  949

seq1  GAAGCTGACAAGTCTCCTTACAGTCTAGTCCCTTATGTTTAATTTTCCCT  1000
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  GAAGCTGACAAGTCTC--TACAGTCTAGTCCCTTATGTTTAATTTTCCCT  997

seq1  TTAGTAACGTTCTTCTTCTCTTTTTTCCCCCAAACTAAAAAATGACATCC  1050
      |||||||||||||||||||||||||| ||||||||| ||||||||||| |
seq2  TTAGTAACGTTCTTCTTCTCTTTTTT-CCCCAAACT-AAAAATGACATTC  1045

seq1  ATCCTTACATCACAGC-TCAAAGAAACAAGGATTTCTCAT  1089
      |||||||||||||||| |||||||||| ||   |||||||
seq2  ATCCTTACATCACAGCTTCAAAGAAACCAG--ATTCTCAT  1083