BAC Information

Click to search

BAC

Clone NameB6Ng01-323L15
Chromosome2 (Build37)
Map Location 94,255,934 - 94,257,057
singlet/doubletsinglet
Overlap geneApi5
Upstream geneLOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1
Downstream geneLOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323L15.bB6Ng01-323L15.g
ACCGA112233GA112234
length9521,135
definitionB6Ng01-323L15.b B6Ng01-323L15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcggtctcttcctgcaccagttaataagcacggccattgagc
agcttgcttacagtatctgtacttcagctttttcatttttaagatggtaa
gaggaccttcctcttaggaaagtggtgggggttgaagtgatgagcacggt
gcgctcgggacttgcacagaggcagagctgctactgagcttttctaagga
tgttttccatgacttccctgactttgctgatagatacacagactcaagct
accacatgtctccttccagcacttgtgtgagtgaacgtgcagcatgattt
gaaggaagcatatataccatatgtgttgtgtgtttgtctaactgttattt
aaatgtgtatgtgccattgactctgtaatagcaaaggaaacacatatagc
attatattgtactcccatagtgtgcatctgaggaggggggctgcatgaag
gttgccaaggatatccaggtcctaacctctgtaacttatgaatgccacct
taagtgataaaagagactctgaagataatattaaattgagaacctggaga
tgagaagactctcttggattattcaaatgggcctcactattgatcctaat
gttccagtatgggaagcgggagggggacttgaatacagagaaggagaagg
catcataatgataaaagcaggagctggagtggcacaagggaagaatcatg
gccaggggatacagggggcttccaggggctgcacaaagtgaaaccctgag
acttccttccatccttgaagaaacaaacaaccttcctagtgagtatcgtt
tgcccacttaaagtgatcctgggtttctgacttccagaactgtgtgagaa
caagtcagtgttgcttaaagctatcaaatgggcattaacattgctttcag
cagatcacagactacttggaaatattttttaattatcacaatttattact
cg

gaattctgtgagcaagaagaaaactgaagtgagcatctatctacaactaa
tgtgatggaacatgctccaggcaagtgagctcatctgtgggaaccaaacc
ccacatctggacaagaaaaactatcactcgacactcatcagtcatatcct
aaagctggacagagaaatgggtttaaactgaatgggaaacgtgaagtcaa
gaaaaccctttaaattgtgactgtgagaacacaacaacatggccatgctc
aacaggacagtgtaaaacactgggagaccgtgtccttaagtcctaaaaca
aaggagttgtatctactttgcacaccattttgccttttaacataatgaag
atttccaagtagcttaaaccatgactcttagcttttttgttaagtaaagt
gcctattttttaaacaatttaaaaaattgattttatttatttatttactg
tttgtttttggagacaggtttctttattatgtagttctggctgttatgga
acttgctatgtagacatgcctgtccctgcctcccaagtgctgagattaaa
ggtgtataccaccatacctgttcccccctctttcatatttttattttatt
ttattttatttgtgtttttaagacagggtttctctgtattccctggctgt
cctggaactcactttgtagaccaggctgggctcaaactcagagattaaag
gtgtgcaacaccacacccggttcagatttttaataaaaacacccccactt
ctatttacttgtgactcttttttttttttttttttgcagcttttaaaatt
aaaatatatttacatcctagtttactgggcatacaaactatgtgttaaca
ttttctgcatttgttctccaccttatatcaagctgtgggttctgtgagac
aaaatcttttatgttttcgaaactcatactcaccatgtaactattcaagt
tacagagaaaatacatttcctttatgtgctgtgccaaaattatcatgaat
tacttcggtcaatgctatttcctcatagcattctaaactgctgattttca
gattttacgaatatccacaatcaggtcaaaaatatcggaagaatggtatt
gatgtataaaacaccaagactgctttcattaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_94255934_94257057
seq2: B6Ng01-323L15.g_68_1202

seq1  GAATTCTGTGAGCAAGAAGAAAACTGAAGTGAGCATCTATCTACAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGCAAGAAGAAAACTGAAGTGAGCATCTATCTACAACTAA  50

seq1  TGTGATGGAACATGCTCCAGGCAAGTGAGCTCATCTGTGGGAACCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAACATGCTCCAGGCAAGTGAGCTCATCTGTGGGAACCAAACC  100

seq1  CCACATCTGGACAAGAAAAACTATCACTCGACACTCATCAGTCATATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTGGACAAGAAAAACTATCACTCGACACTCATCAGTCATATCCT  150

seq1  AAAGCTGGACAGAGAAATGGGTTTAAACTGAATGGGAAACGTGAAGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGACAGAGAAATGGGTTTAAACTGAATGGGAAACGTGAAGTCAA  200

seq1  GAAAACCCTTTAAATTGTGACTGTGAGAACACAACAACATGGCCATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCTTTAAATTGTGACTGTGAGAACACAACAACATGGCCATGCTC  250

seq1  AACAGGACAGTGTAAAACACTGGGAGACCGTGTCCTTAAGTCCTAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACAGTGTAAAACACTGGGAGACCGTGTCCTTAAGTCCTAAAACA  300

seq1  AAGGAGTTGTATCTACTTTGCACACCATTTTGCCTTTTAACATAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTGTATCTACTTTGCACACCATTTTGCCTTTTAACATAATGAAG  350

seq1  ATTTCCAAGTAGCTTAAACCATGACTCTTAGCTTTTTTGTTAAGTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAGTAGCTTAAACCATGACTCTTAGCTTTTTTGTTAAGTAAAGT  400

seq1  GCCTATTTTTTAAACAATTTAAAAAATTGATTTTATTTATTTATTTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTTTTAAACAATTTAAAAAATTGATTTTATTTATTTATTTACTG  450

seq1  TTTGTTTTTGGAGACAGGTTTCTTTATTATGTAGTTCTGGCTGTTATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGGAGACAGGTTTCTTTATTATGTAGTTCTGGCTGTTATGGA  500

seq1  ACTTGCTATGTAGACATGCCTGTCCCTGCCTCCCAAGTGCTGAGATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTATGTAGACATGCCTGTCCCTGCCTCCCAAGTGCTGAGATTAAA  550

seq1  GGTGTATACCACCATACCTGTTCCCCCCTCTTTCATATTTTTATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATACCACCATACCTGTTCCCCCCTCTTTCATATTTTTATTTTATT  600

seq1  TTATTTTATTTGTGTTTTTAAGACAGGGTTTCTCTGTATTCCCTGGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTGTGTTTTTAAGACAGGGTTTCTCTGTATTCCCTGGCTGT  650

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGGCTCAAACTCAGAGATTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTTTGTAGACCAGGCTGGGCTCAAACTCAGAGATTAAAG  700

seq1  GTGTGCAACACCACACCCGGTTCAGATTTTTAATAAAAACACCCCCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAACACCACACCCGGTTCAGATTTTTAATAAAAACACCCCCACTT  750

seq1  CTATTTACTTGTGACTC--TTTTTTTTTTTTTTTTGCAGCTTTTAAAATT  798
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  CTATTTACTTGTGACTCTTTTTTTTTTTTTTTTTTGCAGCTTTTAAAATT  800

seq1  AAAATATATTTACATCCTAGTTTACT-GGCATACAAACTATGTGTT-ACA  846
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  AAAATATATTTACATCCTAGTTTACTGGGCATACAAACTATGTGTTAACA  850

seq1  TTTTCTGCATTTGTTCTCCACCTTATATCAAGCTGTGGGTTCTGTGAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCATTTGTTCTCCACCTTATATCAAGCTGTGGGTTCTGTGAGAC  900

seq1  AAAATC-TTTATG-TTTCGAAACTCATACTCACCATGTAACTATTCAAGT  944
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTTTATGTTTTCGAAACTCATACTCACCATGTAACTATTCAAGT  950

seq1  TACAGAG-AAATACATTT-CTTTATGTGCTGTGC--AAAATATCATG-AT  989
      ||||||| |||||||||| |||||||||||||||  ||| ||||||| ||
seq2  TACAGAGAAAATACATTTCCTTTATGTGCTGTGCCAAAATTATCATGAAT  1000

seq1  TACTTTCGTTCATGCTATTTCCTCATAGCA-TCT-AACTGCTGATTTTCA  1037
      |||||  ||  ||||||||||||||||||| ||| |||||||||||||||
seq2  TACTTCGGTCAATGCTATTTCCTCATAGCATTCTAAACTGCTGATTTTCA  1050

seq1  GATTTTACAGATAT-CACATTAAGTCAAAAAATATCAGAAG-ATAGTATT  1085
      ||||||||  |||| |||| | ||   ||||||||| |||| || ||| |
seq2  GATTTTACGAATATCCACAATCAGGTCAAAAATATCGGAAGAATGGTA-T  1099

seq1  TGATGTAATAAAACAACAAAGACTGCTTTTCATTACCAA  1124
      |||||| ||||||| || |||||||| ||||||||||||
seq2  TGATGT-ATAAAAC-ACCAAGACTGC-TTTCATTACCAA  1135


| Home | SequenceCutter | Blast | Download |