BAC Information

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BAC

Clone NameB6Ng01-323M02
Chromosome9 (Build37)2 (Build37)
Map Location 109,051,606 - 109,052,365119,826,278 - 119,826,326
singlet/doubletsingletsinglet
Overlap geneE330009P21Rik
Upstream geneBsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1
Downstream geneFbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323M02.bB6Ng01-323M02.g
ACCGA112254GA112255
length7621,126
definitionB6Ng01-323M02.b B6Ng01-323M02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,051,606 - 109,052,365)(119,826,278 - 119,826,326)
sequence
gaattctctatgtaaaccaggctggtttcaaactcacctgcctctgcctc
ctgagtgctggagttaaaggcctgggccaccatttctggcagcattaagt
tttacaacacatgaaacaaacctattcacaatgaatcaattccataactg
attgttctatcatctgttcttacacattgcaaatgagcaatacagatttc
tcttgcaggcttttctttagcttaaaaaacaaaaccaaaaaaatcccagg
ggctggagagatggctcagtggttaagattactgtctgctgttccaaagg
tcctgagttcaattcccagcaaccacatggtggctcacaaccatctataa
tgggatctgatgccatatttgggcatgcaggtaaacatcctgatagtgat
agacctagtggggaaacccccactcaattcctaatttggcgtgcacccaa
aaaaatcacgaaggaccatcttgatgtaattacatgaggtcgtttaatta
ctgagctctggaccgacatgcatcccacacaggagataacggatgtcggt
cacgaggctcaaaagctaggggtttttatggggtgaggggcttaggggtg
tggaattcataatagtgacacacaatacacactattggcttcagcaaaag
ggcatcacgactttgttcctgtgagctgggggctttatcttgttcacatc
tcaacgaattgatatatgactttagccagtcccaacgggctaagagacag
aggggaggttcc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccggggcccagcaaa
cacagaagtggatgctcacagtcagctaatgggatgggatcatagggctc
ccaatggaggagctagagaaagtagccagagctaaagggatctgcaccct
ataggtggacacattatgagctaaccagtaccccgagctctgactctagc
tgcatatatatatcaaagatgctagttcgccatcactggaagtattgcta
gttacaggaatacatggcaaaaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109051606_109052365
seq2: B6Ng01-323M02.b_48_809

seq1  GAATTCTCTATGTAAACCAGGCTGGTTTCAAACTCACCTGCCTCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGTAAACCAGGCTGGTTTCAAACTCACCTGCCTCTGCCTC  50

seq1  CTGAGTGCTGGAGTTAAAGGCCTGGGCCACCATTTCTGGCAGCATTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTGGAGTTAAAGGCCTGGGCCACCATTTCTGGCAGCATTAAGT  100

seq1  TTTACAACACATGAAACAAACCTATTCACAATGAATCAATTCCATAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACACATGAAACAAACCTATTCACAATGAATCAATTCCATAACTG  150

seq1  ATTGTTCTATCATCTGTTCTTACACATTGCAAATGAGCAATACAGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTATCATCTGTTCTTACACATTGCAAATGAGCAATACAGATTTC  200

seq1  TCTTGCAGGCTTTTCTTTAGCTTAAAAAACAAAACCAAAAAAATCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGGCTTTTCTTTAGCTTAAAAAACAAAACCAAAAAAATCCCAGG  250

seq1  GGCTGGAGAGATGGCTCAGTGGTTAAGATTACTGTCTGCTGTTCCAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATGGCTCAGTGGTTAAGATTACTGTCTGCTGTTCCAAAGG  300

seq1  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATAA  350

seq1  TGGGATCTGATGCCATATTTGGGCATGCAGGTAAACATCCTGATAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGATGCCATATTTGGGCATGCAGGTAAACATCCTGATAGTGAT  400

seq1  AGACCTAGTGGGGAAACCCCCACTCAATTCCTAATTTGGCGTGCACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGTGGGGAAACCCCCACTCAATTCCTAATTTGGCGTGCACCCAA  450

seq1  AAAAATCACGAAGGACCATCTTGATGTAATTACATGAGGTCGTTTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACGAAGGACCATCTTGATGTAATTACATGAGGTCGTTTAATTA  500

seq1  CTGAGCTCTGGACCGACATGCATCCCACACAGGAGATAACGGATGTCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTGGACCGACATGCATCCCACACAGGAGATAACGGATGTCGGT  550

seq1  CACGAGGCTCAAAAGCTAGGGGTTTTTATGGGGTGAGGGGCTTAGGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCTCAAAAGCTAGGGGTTTTTATGGGGTGAGGGGCTTAGGGGTG  600

seq1  TGGAATTCAGAATAGTGACACACAAGACACACTATTGGCTTCAGCAAAAG  650
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  TGGAATTCATAATAGTGACACACAATACACACTATTGGCTTCAGCAAAAG  650

seq1  GGCATCAGGACTTTGTTCCTGTGGGCTGGGGGC-TTATCTTGTTCACATA  699
      ||||||| ||||||||||||||| ||||||||| ||||||||||||||| 
seq2  GGCATCACGACTTTGTTCCTGTGAGCTGGGGGCTTTATCTTGTTCACATC  700

seq1  GCAACCAGTTGATATATGACTTTACCCAGCACCAAGGGGC-AATAGACAG  748
       |||| | |||||||||||||||| ||||  |||| |||| || ||||||
seq2  TCAACGAATTGATATATGACTTTAGCCAGTCCCAACGGGCTAAGAGACAG  750

seq1  AGGGGAGGTTCC  760
      ||||||||||||
seq2  AGGGGAGGTTCC  762

seq1: chr2_119826278_119826326
seq2: B6Ng01-323M02.g_1079_1188

seq1  TGAGCTATCTCACCAG--CCCCGAGCTCTGACTCT---------TACATG  39
      |||||||    |||||  |||||||||||||||||         || || 
seq2  TGAGCTA----ACCAGTACCCCGAGCTCTGACTCTAGCTGCATATATATA  46

seq1  GCAAAAAGGG----------------------------------------  49
       |||| | |                                         
seq2  TCAAAGATGCTAGTTCGCCATCACTGGAAGTATTGCTAGTTACAGGAATA  96

seq1  --------------  49
                    
seq2  CATGGCAAAAAGGG  110