BAC Information

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BAC

Clone NameB6Ng01-323N20
Chromosome2 (Build37)
Map Location 106,337,051 - 106,338,371
singlet/doubletsinglet
Overlap gene9330126M15
Upstream genePax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765, Dcdc5
Downstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323N20.b
ACCGA112332
length1,169
definitionB6Ng01-323N20.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaataaaattattataagttaaaattgccctgaacctgcaata
ttttatttctggtacaaggaaggaaaaggttaaagtcttgacatgaatgc
caaattgcttccccaaatcgcggcagcacattttctttccatacacattg
cttcagactctgcactgaacactttctaccctgaagtagggtttttttta
attactaatatgatgattttaatgtacatttattttgaggctaataaaag
gaagaattttcctatgtagactcaccattaccaaatggtaattctcattc
tctcgttctctctctctctctctctctctctctctctctctctgtctttg
taaactgttaataacctttgtagttgagattttgcttttaaaatcaccct
taacttcagttatagctcatctgttttaagatttttcccccttggtttct
gtgttaatattgtttcctattaaagctataaaagtacactcagaattttt
aacattgtagtctctgttattgtttttatctgtgtgtttgatatgagtct
tatgtaccccagactggcctcaagtctgagatttagcaaaggatgacctt
gaacggcttatcctcctgaatgctaggattactggcttgagctaccacag
tgctggggatgcagcccaaggctttgcacatgctaaacaaaccctctgcc
cactgagccacttgtctggccccagctctgttcttttagtgcagtcggat
gtgctgcatacttgtgatatcatctctgtgttgctaaaactccttctctg
gcctcccaagaccacaacagcaaactgaggcaccattccacctaagctcg
tagcgatgtgagcggtcctttcacagccaactgaccctaagaggctttat
ccagtaggcattccaccttccccagtcacatagacccaaagcctcaacct
ccaagcccaacacttctgccttggccacctttaggccttcatgtactcag
gcccctcccccacgccatgttacagtacctccaggtcataggagcaatgg
gacttctcaacaaatctctactgctaccgaaacctctctgtgtgcaagga
tgtatgcagcctgctggaatcttttctcagggtcagcgtggacacagctg
actccaaaagagcaatgct
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_106337051_106338371
seq2: B6Ng01-323N20.b_46_1214

seq1  GAATTCACAATAAAATTATTATAAGTTAAAATTGCCCTGAACCTGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATAAAATTATTATAAGTTAAAATTGCCCTGAACCTGCAATA  50

seq1  TTTTATTTCTGGTACAAGGAAGGAAAAGGTTAAAGTCTTGACATGAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTGGTACAAGGAAGGAAAAGGTTAAAGTCTTGACATGAATGC  100

seq1  CAAATTGCTTCCCCAAATCGCGGCAGCACATTTTCTTTCCATACACATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCTTCCCCAAATCGCGGCAGCACATTTTCTTTCCATACACATTG  150

seq1  CTTCAGACTCTGCACTGAACACTTTCTACCCTGAAGTAGGGTTTTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACTCTGCACTGAACACTTTCTACCCTGAAGTAGGGTTTTTTTTA  200

seq1  ATTACTAATATGATGATTTTAATGTACATTTATTTTGAGGCTAATAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAATATGATGATTTTAATGTACATTTATTTTGAGGCTAATAAAAG  250

seq1  GAAGAATTTTCCTATGTAGACTCACCATTACCAAATGGTAATTCTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTTCCTATGTAGACTCACCATTACCAAATGGTAATTCTCATTC  300

seq1  TCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTTG  350

seq1  TAAACTGTTAATAACCTTTGTAGTTGAGATTTTGCTTTTAAAATCACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTTAATAACCTTTGTAGTTGAGATTTTGCTTTTAAAATCACCCT  400

seq1  TAACTTCAGTTATAGCTCATCTGTTTTAAGATTTTTCCCCCTTGGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAGTTATAGCTCATCTGTTTTAAGATTTTTCCCCCTTGGTTTCT  450

seq1  GTGTTAATATTGTTTCCTATTAAAGCTATAAAAGTACACTCAGAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATATTGTTTCCTATTAAAGCTATAAAAGTACACTCAGAATTTTT  500

seq1  AACATTGTAGTCTCTGTTATTGTTTTTATCTGTGTGTTTGATATGAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTAGTCTCTGTTATTGTTTTTATCTGTGTGTTTGATATGAGTCT  550

seq1  TATGTACCCCAGACTGGCCTCAAGTCTGAGATTTAGCAAAGGATGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACCCCAGACTGGCCTCAAGTCTGAGATTTAGCAAAGGATGACCTT  600

seq1  GAACGGCTTATCCTCCTGAATGCTAGGATTACTGGCTTGAGCTACCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGCTTATCCTCCTGAATGCTAGGATTACTGGCTTGAGCTACCACAG  650

seq1  TGCTGGGGATGCAGCCCAAGGCTTTGCACATGCTAAACAAACCCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGATGCAGCCCAAGGCTTTGCACATGCTAAACAAACCCTCTGCC  700

seq1  CACTGAGCCACTTGCCTGGCCCCAGCTCTGTTCTTTTAGTGCAGTCGGAT  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCACTTGTCTGGCCCCAGCTCTGTTCTTTTAGTGCAGTCGGAT  750

seq1  GTGCTGCATACTTGTGATATCATCTCTGTGTTGCTAAAACTCCTTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCATACTTGTGATATCATCTCTGTGTTGCTAAAACTCCTTCTCTG  800

seq1  GCCTCCCAAGACCACAACAGCAAACTGAGGCACCATTCCACCTAAGCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGACCACAACAGCAAACTGAGGCACCATTCCACCTAAGCTCG  850

seq1  TAGCGATGTGAGCGGTCC-TTCACAGCCAACTGACCCTAAGAGGCCTTAT  899
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  TAGCGATGTGAGCGGTCCTTTCACAGCCAACTGACCCTAAGAGGCTTTAT  900

seq1  CCAGTAGGCATTCCACCTTCCCCAGTCACATAGACCCAAAGCCTCAACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGGCATTCCACCTTCCCCAGTCACATAGACCCAAAGCCTCAACCT  950

seq1  CCAAGCCCAACACTTCCTGCCTTGGCCACCTTTAGGCCTTCATGTACTCA  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCAACACTT-CTGCCTTGGCCACCTTTAGGCCTTCATGTACTCA  999

seq1  GGCCCCTCCCCCACGCCATG-TACAGTA-CTCCAGGTCATAGGAAGCAAA  1047
      |||||||||||||||||||| ||||||| |||||||||||||| ||||| 
seq2  GGCCCCTCCCCCACGCCATGTTACAGTACCTCCAGGTCATAGG-AGCAAT  1048

seq1  TGGAC-TCTCAAACAAAAATCTCTACTTCCTACCCAAACCTCTC--TGTG  1094
       |||| |||||   | |||||||||| | ||||| |||||||||  ||||
seq2  GGGACTTCTCA---ACAAATCTCTAC-TGCTACCGAAACCTCTCTGTGTG  1094

seq1  CCAGGATGTATGCCAGCCCTGCTGGGAAAATC-TTTCTCAGGGGGCCAGC  1143
      | |||||||||| ||| ||||||||   |||| |||||||  ||| ||||
seq2  CAAGGATGTATG-CAG-CCTGCTGG---AATCTTTTCTCA--GGGTCAGC  1137

seq1  GTGGCACACAGCTGAACTCCCAAAGATAGCAGATGCTTGTCGATCACTTT  1193
      |||| ||||||||| ||||| ||||  |||| |||||             
seq2  GTGG-ACACAGCTG-ACTCCAAAAG--AGCA-ATGCT-------------  1169

seq1  TTAAGTTAGGTTGGGTCATATCAGACTCCCTAAACTAATTCCTGTTTAGT  1243
                                                        
seq2  --------------------------------------------------  1169

seq1  GGATACCAGAAGTTCCCTAGCCAACTTCTTATCCATCCTCTGTTTTCTAA  1293
                                                        
seq2  --------------------------------------------------  1169

seq1  CTCCAACATGACAGGATCCAGCAATGCT  1321
                                  
seq2  ----------------------------  1169