BAC Information

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BAC

Clone NameB6Ng01-324I01
Chromosome2 (Build37)
Map Location 45,286,706 - 45,443,108
singlet/doubletdoublet
Overlap genenone
Upstream geneGtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324I01.bB6Ng01-324I01.g
ACCGA112799GA112800
length1,1801,113
definitionB6Ng01-324I01.b B6Ng01-324I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,286,706 - 45,287,875)(45,441,983 - 45,443,108)
sequence
gaattcaaattttgactgtagctgtccttcactcctttggttaagtttat
ttctagatattttatttctttctagactattgtgaatggaaaattatgcg
tccatgatttctttctatgtacatttgttgttggtgtatagaaaagctat
tggtttatgcaagttgattgtccatcttgccacaactgatttttttttat
tattcctagaaaaaatggtagaatttttagaatctctaatggatagtacc
atgccatttattaatagtgatggtttgacttatccattcccttgcctcgc
tagtctgttcaggatcttgctgtgttggatgcggcaggcatcctcctcct
gttgcttttagccatgtcttggacagtgcagccgaggacattcctgtcaa
tgttcaacttactctaaaaataattcatctataacctttcaaattaactc
aaaataagtttcctttggtgagatgaaaacatttgtctacttgtctagag
atatgtctcatcacataacgtttctatataagcttgggagcaagaacttg
acttatggaaaccccattactgaaaggaaccagttccacaaggtttccct
ctgactttcacttgcctgatgtggcatatgagtcccctaccaacacatca
tgaacacacacacacacacacacacacacacacacacacagagagagaga
gagagagagtaaaacaaatcagtcttcttttctcattacattttggtaaa
atggatcataaaacaatttatcacataacaatatatttttatatgttaaa
taatatcccaagaagtaatttattaatcaccactacagtactcagaaatc
ttacactgtataaatatgaagaataccaagacattattgacctcccattc
tttttcagtgacatagcacagaagtggtggcatttgcttaataagaatgc
tgacatttctgcattgatctctcttcctccttctcctccccctcttcttc
ctcctcgtcttcttcctctttctccctctcctctcctcccctctcctctc
ttcctcctccttctctcatatctcattttcatcatcttggtcttttccta
acatggatcacctccactcttggggggtctcgctattttcctttgccatg
aaagagtggtaagagaaaggaatacataac

tgcctaaaattaagctgtgagctcaccattctcaacatgaatctgatgtc
tcagggcacacccagcttaggcacaggaacgcaggcacctgagagctgcc
agggacgttttccgagtcttcttcttttttaaatctttggaaatactctt
gagagactggtaatggactagcaaatctgtgtgcatagacacaaacttta
tatgacacctacgtgaagaagcatactggtgtgtaatatagttgtgcctg
agtaaaactcctctttcgtggaggagagcaaaccacaagagctttggagt
atacacctctaaataaagtaagagagggccattgttaatctcactactat
ttaagagttaatgagagatttgcacctgtacagctgttgtggactgaagc
ttgcttgtggagtgaatgtgtttcctgcttgagacagttgtaaatgcctt
gagtaaaaacactgaggactgctaatggataggtttattttaaagcatgc
catctgctatcaatcatagagaagtataggaagcaagtttggctgggctc
cctccttgtgagcctgataaagacagggctccaggactcaggaacattga
gtcctccagagaataaaacatcaaacctactcagcagctccactaacaat
aataaaaatgcctctgcctaaaggtgacattctgaatttacgattatttg
tgtctataaagtgtattctttggctcctgactcattctgactgtctcact
ctgagaacaatacattaagcctgcctgaagtaaatggaaatcctatcctt
ttattaaaccagcagccagtacctgagctgatctaatgcctgtaggagag
cagaaagattttctgctctagtctatgctttttaaaagactttataagaa
aactacaaatgagatgcatattaatatcctaaaggataatcatgatatgg
gcaagtttatgcttccagagacaaacaaaacaaatgaactaaatgtcaat
tagactaacttaactagtctatatgacgacccaaatggaaaatccattat
acacaatttgtcacagataacggagaccgagccactcagatgggtgtcct
atgccaatggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45286706_45287875
seq2: B6Ng01-324I01.b_48_1227

seq1  GAATTCAAATTTTGACTGTAGCTGTCCTTCACTCCTTTGGTTAAGTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTTTGACTGTAGCTGTCCTTCACTCCTTTGGTTAAGTTTAT  50

seq1  TTCTAGATATTTTATTTCTTTCTAGACTATTGTGAATGGAAAATTATGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATATTTTATTTCTTTCTAGACTATTGTGAATGGAAAATTATGCG  100

seq1  TCCATGATTTCTTTCTATGTACATTTGTTGTTGGTGTATAGAAAAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGATTTCTTTCTATGTACATTTGTTGTTGGTGTATAGAAAAGCTAT  150

seq1  TGGTTTATGCAAGTTGATTGTCCATCTTGCCACAACTGATTTTTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGCAAGTTGATTGTCCATCTTGCCACAACTGATTTTTTTTTAT  200

seq1  TATTCCTAGAAAAAATGGTAGAATTTTTAGAATCTCTAATGGATAGTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAGAAAAAATGGTAGAATTTTTAGAATCTCTAATGGATAGTACC  250

seq1  ATGCCATTTATTAATAGTGATGGTTTGACTTATCCATTCCCTTGCCTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATTTATTAATAGTGATGGTTTGACTTATCCATTCCCTTGCCTCGC  300

seq1  TAGTCTGTTCAGGATCTTGCTGTGTTGGATGCGGCAGGCATCCTCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGTTCAGGATCTTGCTGTGTTGGATGCGGCAGGCATCCTCCTCCT  350

seq1  GTTGCTTTTAGCCATGTCTTGGACAGTGCAGCCGAGGACATTCCTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTAGCCATGTCTTGGACAGTGCAGCCGAGGACATTCCTGTCAA  400

seq1  TGTTCAACTTACTCTAAAAATAATTCATCTATAACCTTTCAAATTAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACTTACTCTAAAAATAATTCATCTATAACCTTTCAAATTAACTC  450

seq1  AAAATAAGTTTCCTTTGGTGAGATGAAAACATTTGTCTACTTGTCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTTTCCTTTGGTGAGATGAAAACATTTGTCTACTTGTCTAGAG  500

seq1  ATATGTCTCATCACATAACGTTTCTATATAAGCTTGGGAGCAAGAACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTCATCACATAACGTTTCTATATAAGCTTGGGAGCAAGAACTTG  550

seq1  ACTTATGGAAACCCCATTACTGAAAGGAACCAGTTCCACAAGGTTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGAAACCCCATTACTGAAAGGAACCAGTTCCACAAGGTTTCCCT  600

seq1  CTGACTTTCACTTGCCTGATGTGGCATATGAGTCCCCTACCAACACATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCACTTGCCTGATGTGGCATATGAGTCCCCTACCAACACATCA  650

seq1  TGAACACACACACACACACACACACACACACACACACACAGAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACACACACACACACACACACACACACACACACACAGAGAGAGAGA  700

seq1  GAGAGAGAGTAAAACAAATCAGTCTTCTTTTCTCATTACATTTTGGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGTAAAACAAATCAGTCTTCTTTTCTCATTACATTTTGGTAAA  750

seq1  ATGGATCATAAAACAATTTATCACATAACAATATATTTTTATATGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCATAAAACAATTTATCACATAACAATATATTTTTATATGTTAAA  800

seq1  TAATAT-CCAAGAAGTAATTTATTAATCACCACTACAGTACTCAGAAATC  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCCAAGAAGTAATTTATTAATCACCACTACAGTACTCAGAAATC  850

seq1  TTACACTGTATAAATATGAAGAATACCAAGACATTATTGACCTCCCAT--  897
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTACACTGTATAAATATGAAGAATACCAAGACATTATTGACCTCCCATTC  900

seq1  CTTTTCAGTGACATAGCACAGAAGTGGTGGCATTTGCTTATAAAGAATGC  947
       |||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TTTTTCAGTGACATAGCACAGAAGTGGTGGCATTTGCTTAATAAGAATGC  950

seq1  TGACATTTCTGCATTGATCTCTCTTCCTCCTTCTCCTCCCCCTCTTCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTCTGCATTGATCTCTCTTCCTCCTTCTCCTCCCCCTCTTCTTC  1000

seq1  CTCCTCGTCTTCTTCCTCTTTCTCCCTCTCCTCCTCCTCCCCTCCTCCTC  1047
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CTCCTCGTCTTCTTCCTCTTTCTCCCTCTCCT-CTCCTCCCCT-CTCCTC  1048

seq1  TCTTCCTCCTCCTTCTCTTCCTCTTCCTCTTTTTCTTCTTCTT-GTCTTT  1096
      ||||||||||||||||| || | |  ||| ||||| || |||| ||||||
seq2  TCTTCCTCCTCCTTCTC-TCATAT--CTCATTTTCATCATCTTGGTCTTT  1095

seq1  T-CTTACATGAATCAC--TCACTCT--GGGGGTC---GTAATTTCCTTTG  1138
      | || ||||| |||||   ||||||  |||||||    || |||||||||
seq2  TCCTAACATGGATCACCTCCACTCTTGGGGGGTCTCGCTATTTTCCTTTG  1145

seq1  CCATGAA--AGTGGTAAG-GAGAAGGATACATAAC  1170
      |||||||  ||||||||| || | | |||||||||
seq2  CCATGAAAGAGTGGTAAGAGAAAGGAATACATAAC  1180


seq1: chr2_45441983_45443108
seq2: B6Ng01-324I01.g_78_1190 (reverse)

seq1  AGTCCATATGGCATAAGGAACACCATCCTGAGTGGCTCGTTCTCTGTTTT  50
      ||||||| |||||||  | |||||   |||||||||||| |||| | || 
seq2  AGTCCAT-TGGCATA--GGACACCCATCTGAGTGGCTCGGTCTCCG-TTA  46

seq1  TCTGTGACATATTGTGTAATATGGAATTTTCCATTTGTGTCGTCATAATA  100
      ||||||||| ||||||||  |||| |||||||||||| |||||||| |||
seq2  TCTGTGACAAATTGTGTATAATGG-ATTTTCCATTTGGGTCGTCAT-ATA  94

seq1  GACTAGTTAAGTTTAGTCTAATTTGACATTTTAGTTCATTTTGTTTTGTT  150
      ||||||||||| ||||||||| |||||| ||||||||| ||||||||| |
seq2  GACTAGTTAAG-TTAGTCTAA-TTGACA-TTTAGTTCA-TTTGTTTTG-T  139

seq1  TTGTCTTCTTGGAAGCATAAACTTGCCCATATCATGATTATCCTTTAGGA  200
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCT--CTGGAAGCATAAACTTGCCCATATCATGATTATCCTTTAGGA  187

seq1  TATTAATATGCATCTCATTTGTAGTTTTCTTATAAAGTCTTTTAAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATATGCATCTCATTTGTAGTTTTCTTATAAAGTCTTTTAAAAAGC  237

seq1  ATAGACTAGAGCAGAAAATCTTTCTGCTCTCCTACAGGCATTAGATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTAGAGCAGAAAATCTTTCTGCTCTCCTACAGGCATTAGATCAGC  287

seq1  TCAGGTACTGGCTGCTGGTTTAATAAAAGGATAGGATTTCCATTTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTACTGGCTGCTGGTTTAATAAAAGGATAGGATTTCCATTTACTTC  337

seq1  AGGCAGGCTTAATGTATTGTTCTCAGAGTGAGACAGTCAGAATGAGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTTAATGTATTGTTCTCAGAGTGAGACAGTCAGAATGAGTCAG  387

seq1  GAGCCAAAGAATACACTTTATAGACACAAATAATCGTAAATTCAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAGAATACACTTTATAGACACAAATAATCGTAAATTCAGAATGT  437

seq1  CACCTTTAGGCAGAGGCATTTTTATTATTGTTAGTGGAGCTGCTGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAGGCAGAGGCATTTTTATTATTGTTAGTGGAGCTGCTGAGTAG  487

seq1  GTTTGATGTTTTATTCTCTGGAGGACTCAATGTTCCTGAGTCCTGGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGTTTTATTCTCTGGAGGACTCAATGTTCCTGAGTCCTGGAGCC  537

seq1  CTGTCTTTATCAGGCTCACAAGGAGGGAGCCCAGCCAAACTTGCTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTATCAGGCTCACAAGGAGGGAGCCCAGCCAAACTTGCTTCCTA  587

seq1  TACTTCTCTATGATTGATAGCAGATGGCATGCTTTAAAATAAACCTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTATGATTGATAGCAGATGGCATGCTTTAAAATAAACCTATCC  637

seq1  ATTAGCAGTCCTCAGTGTTTTTACTCAAGGCATTTACAACTGTCTCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGTCCTCAGTGTTTTTACTCAAGGCATTTACAACTGTCTCAAGC  687

seq1  AGGAAACACATTCACTCCACAAGCAAGCTTCAGTCCACAACAGCTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACATTCACTCCACAAGCAAGCTTCAGTCCACAACAGCTGTACA  737

seq1  GGTGCAAATCTCTCATTAACTCTTAAATAGTAGTGAGATTAACAATGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAATCTCTCATTAACTCTTAAATAGTAGTGAGATTAACAATGGCC  787

seq1  CTCTCTTACTTTATTTAGAGGTGTATACTCCAAAGCTCTTGTGGTTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTACTTTATTTAGAGGTGTATACTCCAAAGCTCTTGTGGTTTGCT  837

seq1  CTCCTCCACGAAAGAGGAGTTTTACTCAGGCACAACTATATTACACACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACGAAAGAGGAGTTTTACTCAGGCACAACTATATTACACACCA  887

seq1  GTATGCTTCTTCACGTAGGTGTCATATAAAGTTTGTGTCTATGCACACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTCTTCACGTAGGTGTCATATAAAGTTTGTGTCTATGCACACAG  937

seq1  ATTTGCTAGTCCATTACCAGTCTCTCAAGAGTATTTCCAAAGATTTAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAGTCCATTACCAGTCTCTCAAGAGTATTTCCAAAGATTTAAAA  987

seq1  AAGAAGAAGACTCGGAAAACGTCCCTGGCAGCTCTCAGGTGCCTGCGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGACTCGGAAAACGTCCCTGGCAGCTCTCAGGTGCCTGCGTTC  1037

seq1  CTGTGCCTAAGCTGGGTGTGCCCTGAGACATCAGATTCATGTTGAGAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCTAAGCTGGGTGTGCCCTGAGACATCAGATTCATGTTGAGAATG  1087

seq1  GTGAGCTCACAGCTTAATTTTAGGCA  1126
      ||||||||||||||||||||||||||
seq2  GTGAGCTCACAGCTTAATTTTAGGCA  1113


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