BAC Information

Click to search

BAC

Clone NameB6Ng01-324J16
Chromosome2 (Build37)
Map Location 122,698,466 - 122,817,489
singlet/doubletdoublet
Overlap genenone
Upstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324J16.bB6Ng01-324J16.g
ACCGA112875GA112876
length1,1501,110
definitionB6Ng01-324J16.b B6Ng01-324J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,698,466 - 122,699,533)(122,816,377 - 122,817,489)
sequence
gaattcattttcacaatattaactctactgattaataaacataggatgtc
ttccaattttctggtgtctttatccatctttttctgcagaaatttgaagc
tttgattgtagagatctttaacctctgtcgttagctttatttcaagatgt
tttattgcctttgatgctacagtaaatggaacgtgtttctgatctctttc
tctgtggatttgttggtggtgtatcaaaaggttactgatttttctaggtc
gattttatttcttgccacttttcagaaacggttgattgtttctagaagtt
tctgatggattttttggacatcttttatgtatgatataatatcatctaca
aataggcttactttgacttcttttcctatttgtacctggttaattttttt
ctcttgccttattgttccagttactgctctgagcactgtattaagaagta
gccaggatagtgggcaatcctgcctcagtcccgattctaatgagcacttt
tctccatctaagaaaatgttgactctgaatttgccatgtatagcctttat
taagttgagtgatgtttccccagtcctatttgtctttaagtccatttata
ttcctgaaccttaagttagaaagcaaggtcaacaaacacatagttagatg
ttaaaatgtggatgcaagaagcattgagtaactggggccatcccagtgaa
agataatgaagtgtagatgaaataatacacacaaagccctcagacctggt
gatcataattccctaatatagtaaaactaaaattaccaacaggttaaact
tgcattagctggtctttgtgtgtgctactttgtgaactcataaaatttct
tgctttaaaacaatcaacaaatttgggctaaaacctggctataaatattt
attacctctcactgtaccatatgatcaaaggagtattttcagggatctgg
actgaccctggctaaatcatgacttcactgactctgttctggatatacgt
tcttgataagaaaacttcttggttttctttgtgtgacatacaggtaatta
tatccacatttatataaaagttcatatattaatataaaaatttatatgat
tttatatgattatgtatataacaaagccatcctatatctttctcaatgtt

gaattcaagtcatggagatggagaaatgtgcttttccagacaaaaaaaaa
aaaaaaaggaaagaaaaagacatgtttaagaaaaagagaaaataaattct
tggcttatcccacattccagctgcaaaaaaaaaaaaaaagctaagaaagg
tatagggagattatatattccacccacagaatttgactacagacagaaaa
agttactcctatctcattgtgattaaagtcgagtgagtctgagctgtgac
tggagacaggaagaacagcatacagctttacaacgtgaacaccagaagca
ccctgagctggttctgtgaggatgttatggactcccaggggaagtctttg
gatgaaactgcacatatttgggaacaaagacctggctgtaaactgttgtg
agtcagaacaaaatttgttagcattgacttaagcttcaattctattgctt
ggtctgttgcttaggaaactattgactattgaaataacaatgccaaagag
ctagacaaattaaaagtatcaattttaaaagtgagggaacacatttatta
aaagaggcaggaaagaatcaacacttatcgaacagctcccatgccccagc
tctaaactgcttcatattagatcccatctaatctccaggagcctctgtgt
gaggacagaatgcaagctcttctgaggctggatctgcccattcagtgact
cttttatacccccagcatctagaacaatgcctacagtttaggaggcactc
aagaaattgtattcaaaaatggataagtacattaccttcatttctactct
aaactgaagactcatacagtatatttaaattgcaagtggcacaggttgcc
aagattatatgacgttcagccaggcatcaaatcatacccccttgaaaaat
aattttctgctcaaataagaacttgtaaaatattctgatgtttaacacaa
agaaaattatgaaaaccttacctggacctttcttgggatctttcaaagtg
gaggaaatgctcttctatttttgaccgatgagaagtattcattcatgaaa
cttacaggtacaaatctctttttccatactccacttttattttagtacat
ttggggtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122698466_122699533
seq2: B6Ng01-324J16.b_141_1197

seq1  TTGAAGCTTTGATTGTAGAGATCTTTAACCTCTGTCGTTAGCTTTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTTTGATTGTAGAGATCTTTAACCTCTGTCGTTAGCTTTATTTC  50

seq1  AAGATGTTTTATTGCCTTTGATGCTACAGTAAATGGAACGTGTTTCTGAT  100
      ||                     |||||||||||||||||||||||||||
seq2  AANNNNNNNNNNNNNNNNNNNNNCTACAGTAAATGGAACGTGTTTCTGAT  100

seq1  CTCTTTCTCTGTGGATTTGTTGGTGGTGTATCAAAAGGTTACTGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTGTGGATTTGTTGGTGGTGTATCAAAAGGTTACTGATTTTT  150

seq1  CTAGGTCGATTTTATTTCTTGCCACTTTTCAGAAACGGTTGATTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCGATTTTATTTCTTGCCACTTTTCAGAAACGGTTGATTGTTTCT  200

seq1  AGAAGTTTCTGATGGATTTTTTGGACATCTTTTATGTATGATATAATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTCTGATGGATTTTTTGGACATCTTTTATGTATGATATAATATC  250

seq1  ATCTACAAATAGGCTTACTTTGACTTCTTTTCCTATTTGTACCTGGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAATAGGCTTACTTTGACTTCTTTTCCTATTTGTACCTGGTTAA  300

seq1  TTTTTTTCTCTTGCCTTATTGTTCCAGTTACTGCTCTGAGCACTGTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTTGCCTTATTGTTCCAGTTACTGCTCTGAGCACTGTATTA  350

seq1  AGAAGTAGCCAGGATAGTGGGCAATCCTGCCTCAGTCCCGATTCTAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGCCAGGATAGTGGGCAATCCTGCCTCAGTCCCGATTCTAATGA  400

seq1  GCACTTTTCTCCATCTAAGAAAATGTTGACTCTGAATTTGCCATGTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTCTCCATCTAAGAAAATGTTGACTCTGAATTTGCCATGTATAG  450

seq1  CCTTTATTAAGTTGAGTGATGTTTCCCCAGTCCTATTTGTCTTTAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTAAGTTGAGTGATGTTTCCCCAGTCCTATTTGTCTTTAAGTCC  500

seq1  ATTTATATTCCTGAACCTTAAGTTAGAAAGCAAGGTCAACAAACACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTCCTGAACCTTAAGTTAGAAAGCAAGGTCAACAAACACATAG  550

seq1  TTAGATGTTAAAATGTGGATGCAAGAAGCATTGAGTAACTGGGGCCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTTAAAATGTGGATGCAAGAAGCATTGAGTAACTGGGGCCATCC  600

seq1  CAGTGAAAGATAATGAAGTGTAGATGAAATAATACACACAAAGCCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAGATAATGAAGTGTAGATGAAATAATACACACAAAGCCCTCAG  650

seq1  ACCTGGTGATCATAATTCCCTAATATAGTAAAACTAAAATTACCAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGATCATAATTCCCTAATATAGTAAAACTAAAATTACCAACAGG  700

seq1  TTAAACTTGCATTAGCTGGTCTTTGTGTGTGCTACTTTGTGAACTCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTGCATTAGCTGGTCTTTGTGTGTGCTACTTTGTGAACTCATAA  750

seq1  AATTTCTTGCTTTAAAACAATCAACAAATTTGGGCTAAAACCTGGCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATTTCTTGCTTTAAAACAATCAACAAATTTGGGCTAAAACCTGGCTAT-  799

seq1  AAATATTTATTACCTCTCACTGTACCATATGATCAAAGGAGTATTTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATATTTATTACCTCTCACTGTACCATATGATCAAAGGAGTATTTTCA-  848

seq1  GGGATCTGGACTGACCCTGGCTAAATCATGACTTCACTGACTCTGTTCTT  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGATCTGGACTGACCCTGGCTAAATCATGACTTCACTGACTCTGTTC-T  897

seq1  GGATATACGTTCTTGATAAGAAAACTTCTTGGTTTTCTTTGTTGTGACAT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGATATACGTTCTTGATAAGAAAACTTCTTGGTTTTCTTTG-TGTGACAT  946

seq1  ACAGGTAATTATATCACAATTTATATAAAAATT-TTATATTATTTTATAT  999
      |||||||||||||||   |||||||||||| ||  |||||||    ||| 
seq2  ACAGGTAATTATATCCACATTTATATAAAAGTTCATATATTA----ATA-  991

seq1  TAAAAATTTATATGAATTTTTATAATGATTATGTATATAACAAAGCCATC  1049
      |||||||||||||||  |||||| ||||||||||||||||||||||||||
seq2  TAAAAATTTATATGA--TTTTAT-ATGATTATGTATATAACAAAGCCATC  1038

seq1  CTATATCTTTCTCAATGTT  1068
      |||||||||||||||||||
seq2  CTATATCTTTCTCAATGTT  1057

seq1: chr2_122816377_122817489
seq2: B6Ng01-324J16.g_68_1177 (reverse)

seq1  GACACCCCAAAATGTAACTAAAAATAAAAGTGAAATATTGGAAAAAGAGA  50
      |||||||| |||||| ||| |||||||||||| | || ||||||||||||
seq2  GACACCCC-AAATGT-ACT-AAAATAAAAGTGGAGTA-TGGAAAAAGAGA  46

seq1  TTTGTA-CTGTAAAGTTTCATGAATGAATACTTTCTCATCGGTC-AAAAT  98
      |||||| |||| ||||||||||||||||||| |||||||||||| |||||
seq2  TTTGTACCTGT-AAGTTTCATGAATGAATAC-TTCTCATCGGTCAAAAAT  94

seq1  AG-AGAGCATTTCCTCCACTTTTGAAAGAT-CCAAGAAAGGTCCAGGTAA  146
      || |||||||||||||||| |||||||||| |||||||||||||||||||
seq2  AGAAGAGCATTTCCTCCAC-TTTGAAAGATCCCAAGAAAGGTCCAGGTAA  143

seq1  GGTTTTCATAATTTTCTTTGTG-TAAACATCAGAAATATTTTACAAGTTC  195
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  GGTTTTCATAATTTTCTTTGTGTTAAACATCAG-AATATTTTACAAGTTC  192

seq1  TTATTTGAGCAGAAAATTATTTTTCAAGGGGGTATGATTTGATGCCTGGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGCAGAAAATTATTTTTCAAGGGGGTATGATTTGATGCCTGGC  242

seq1  TGAACGTCATATAATCTTGGCAACCTGTGCCACTTGCAATTTAAATATAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTCATATAATCTTGGCAACCTGTGCCACTTGCAATTTAAATATAC  292

seq1  TGTATGAGTCTTCAGTTTAGAGTAGAAATGAAGGTAATGTACTTATCCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGTCTTCAGTTTAGAGTAGAAATGAAGGTAATGTACTTATCCAT  342

seq1  TTTTGAATACAATTTCTTGAGTGCCTCCTAAACTGTAGGCATTGTTCTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATACAATTTCTTGAGTGCCTCCTAAACTGTAGGCATTGTTCTAG  392

seq1  ATGCTGGGGGTATAAAAGAGTCACTGAATGGGCAGATCCAGCCTCAGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGGGTATAAAAGAGTCACTGAATGGGCAGATCCAGCCTCAGAAG  442

seq1  AGCTTGCATTCTGTCCTCACACAGAGGCTCCTGGAGATTAGATGGGATCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCATTCTGTCCTCACACAGAGGCTCCTGGAGATTAGATGGGATCT  492

seq1  AATATGAAGCAGTTTAGAGCTGGGGCATGGGAGCTGTTCGATAAGTGTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGCAGTTTAGAGCTGGGGCATGGGAGCTGTTCGATAAGTGTTG  542

seq1  ATTCTTTCCTGCCTCTTTTAATAAATGTGTTCCCTCACTTTTAAAATTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCTGCCTCTTTTAATAAATGTGTTCCCTCACTTTTAAAATTGA  592

seq1  TACTTTTAATTTGTCTAGCTCTTTGGCATTGTTATTTCAATAGTCAATAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAATTTGTCTAGCTCTTTGGCATTGTTATTTCAATAGTCAATAG  642

seq1  TTTCCTAAGCAACAGACCAAGCAATAGAATTGAAGCTTAAGTCAATGCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAGCAACAGACCAAGCAATAGAATTGAAGCTTAAGTCAATGCTA  692

seq1  ACAAATTTTGTTCTGACTCACAACAGTTTACAGCCAGGTCTTTGTTCCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTGTTCTGACTCACAACAGTTTACAGCCAGGTCTTTGTTCCCA  742

seq1  AATATGTGCAGTTTCATCCAAAGACTTCCCCTGGGAGTCCATAACATCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGCAGTTTCATCCAAAGACTTCCCCTGGGAGTCCATAACATCCT  792

seq1  CACAGAACCAGCTCAGGGTGCTTCTGGTGTTCACGTTGTAAAGCTGTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACCAGCTCAGGGTGCTTCTGGTGTTCACGTTGTAAAGCTGTATG  842

seq1  CTGTTCTTCCTGTCTCCAGTCACAGCTCAGACTCACTCGACTTTAATCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCCTGTCTCCAGTCACAGCTCAGACTCACTCGACTTTAATCAC  892

seq1  AATGAGATAGGAGTAACTTTTTCTGTCTGTAGTCAAATTCTGTGGGTGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATAGGAGTAACTTTTTCTGTCTGTAGTCAAATTCTGTGGGTGGA  942

seq1  ATATATAATCTCCCTATACCTTTCTTAGCTTTTTTTTTTTTTTTGCAGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATCTCCCTATACCTTTCTTAGCTTTTTTTTTTTTTTTGCAGCT  992

seq1  GGAATGTGGGATAAGCCAAGAATTTATTTTCTCTTTTTCTTAAACATGTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGGGATAAGCCAAGAATTTATTTTCTCTTTTTCTTAAACATGTC  1042

seq1  TTTTTCTTTCCTTTTTTTTTTTTTTTTGTCTGGAAAAGCACATTTCTCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCCTTTTTTTTTTTTTTTTGTCTGGAAAAGCACATTTCTCCA  1092

seq1  TCTCCATGACTTGAATTC  1113
      ||||||||||||||||||
seq2  TCTCCATGACTTGAATTC  1110