BAC Information

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BAC

Clone NameB6Ng01-324M10
Chromosome2 (Build37)
Map Location 79,692,547 - 79,693,583
singlet/doubletsinglet
Overlap genePde1a
Upstream geneUbe2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
Downstream geneLOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324M10.bB6Ng01-324M10.g
ACCGA113005GA113006
length1,1981,044
definitionB6Ng01-324M10.b B6Ng01-324M10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagagatctgcctgcttctgttatacatagatgctaagctagctg
gatgggacccagtcctgaaattattatttctaccacacctgggcctaacc
ttgctgtgtttgaccttgaactcaggaatctgcctgcctttgtatctttc
tgacatgctggcccattaatgcagctgcttttgtttctttagatttgtga
agcccctcatataattcacattgcatcctaatatttttttcatggttgag
aaattatatattttttgaactcatgtttttagagttcttttccacagcct
aaagggctcttctgaaggtcccagtgttcaacattttttggtaacacagc
cacatccttgactcctggtgatgtttccaattctcatggagtcataatgt
taccagggaggactttccttggaggaatgtgaaatatgtacattattaca
caaacaggctttatgcccacagagccaatgactgacactcatggaggctc
acaccagggccttatcccaggggcaggaaccatttcactctgccctctca
gggccacatcagcctcagtgtcctggtccccaaatggtaggctttgacca
gtgtgatgataccaaggttctgatgtgggaattgtggtttgagaaattct
tttctctaatttctgagacagaacttctagtgctatcctgtaaaataaaa
ttaaaaacacatttcttattctgttatcaaataaataaaatgaaaatgat
atttttattctttcatgacactataaatggtaatcaaacgaaagaaagcc
tatgaacacgtgatgaacagtttttttttccattggctgtctaagagatc
agcaacagacagctctgctgatttttatatctctgtcttccattgtccta
cagtggcttaaaacaggaatgtctcccctggtggttgtgttgagttactg
gctcactaaaaaaaataatctatgctgtaaactgaaaactcttcttacta
ttcaaaaatgctgtgaagtaactttgtatacagagcttgtagctatagcc
tggcttattacaggacagttagccggctgccactgaagggttctttttgc
tgcatcacactgtcagagaagaaggtacattcagaggccactcttcactc
tgaaaccgtgcacttgttggaacgcttcaacctgtcgtggttaagagt
gaattcatatctgtaacattattaattatctacagcctatggtattaaat
tttctgttgaattatgagttaatatatttaaaattacatatataattttg
ttatattaaattatcaatggtaattattaataatgatgaaaatattgata
tgttatatttgtattatatgtagttatttagttggaagaggggcacgtag
aggtcacaagacaacttaccggagtcatatctctctttccacgtacatgg
gtggtaagtactttaacccactgagtcatttgaccagccctgggatttac
agactttaagtgcaactcccagatggatataataataatatagttaaaat
ttgaattcagatggtttaaaagggcttaatacattttagcctttctatct
taagttcttgataaaatctatttgtactttaacacaaatgtgtcaatatg
taccaatttattaaaatcatgggcaatctgggtaagaaggggcataagaa
ggataaattgctgagaatgatacattgaattcgtaataacagcaacaaca
aagacagagtcttagagaatatgtttagccagccacacttcttaccactt
acccatcaatttcatcttgcacaaaaaattttattcatgtatggagcaga
tctgggatttctactccagagccaccctctgcttcacaaacctgaagatg
ctgctcacacagacctactccctgacccaagagagtaagtttacacaaaa
ttgaaaaagtaagaaaaaatttagtcgtctggaaagatataattatactg
tttcaagatgagacatatgagataaatgtgtttattttttcatttttatg
ctaagaaaaactaaaatgattttgagctcagttttctgggggtgatacag
cagtttaacagcaacaagtgtaagcagtaatttcattaaagacaaaacaa
taacacaaaacaaacagaaaaccaaattcttcttttcattaatgtcttgg
gctgttaattactgtaagtaaagaattagcttaagaactaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79692547_79693583
seq2: B6Ng01-324M10.g_68_1111

seq1  GAATTCATATCTGTAACATTATTAATTATCTACAGCCTATGGTATTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCTGTAACATTATTAATTATCTACAGCCTATGGTATTAAAT  50

seq1  TTTCTGTTGAATTATGAGTTAATATATTTAAAATTACATATATAATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGAATTATGAGTTAATATATTTAAAATTACATATATAATTTTG  100

seq1  TTATATTAAATTATCAATGGTAATTATTAATAATGATGAAAATATTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAAATTATCAATGGTAATTATTAATAATGATGAAAATATTGATA  150

seq1  TGTTATATTTGTATTATATGTAGTTATTTAGTTGGAAGAGGGGCACGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTTGTATTATATGTAGTTATTTAGTTGGAAGAGGGGCACGTAG  200

seq1  AGGTCACAAGACAACTTACCGGAGTCATATCTCTCTTTCCACGTACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAAGACAACTTACCGGAGTCATATCTCTCTTTCCACGTACATGG  250

seq1  GTGGTAAGTACTTTAACCCACTGAGTCATTTGACCAGCCCTGGGATTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTACTTTAACCCACTGAGTCATTTGACCAGCCCTGGGATTTAC  300

seq1  AGACTTTAAGTGCAACTCCCAGATGGATATAATAATAATATAGTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAAGTGCAACTCCCAGATGGATATAATAATAATATAGTTAAAAT  350

seq1  TTGAATTCAGATGGTTTAAAAGGGCTTAATACATTTTAGCCTTTCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCAGATGGTTTAAAAGGGCTTAATACATTTTAGCCTTTCTATCT  400

seq1  TAAGTTCTTGATAAAATCTATTTGTACTTTAACACAAATGTGTCAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTGATAAAATCTATTTGTACTTTAACACAAATGTGTCAATATG  450

seq1  TACCAATTTATTAAAATCATGGGCAATCTGGGTAAGAAGGGGCATAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTTATTAAAATCATGGGCAATCTGGGTAAGAAGGGGCATAAGAA  500

seq1  GGATAAATTGCTGAGAATGATACATTGAATTCGTAATAACAGCAACAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATTGCTGAGAATGATACATTGAATTCGTAATAACAGCAACAACA  550

seq1  AAGACAGAGTCTTAGAGAATATGTTTAGCCAGCCACACTTCTTACCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGTCTTAGAGAATATGTTTAGCCAGCCACACTTCTTACCACTT  600

seq1  ACCCATCAATTTCATCTTGCACAAAAAATTTTATTCATGTATGGAGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCAATTTCATCTTGCACAAAAAATTTTATTCATGTATGGAGCAGA  650

seq1  TCTGGGATTTCTACTCCAGAGCCACCCTCTGCTTCACAAACCTGAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATTTCTACTCCAGAGCCACCCTCTGCTTCACAAACCTGAAGATG  700

seq1  CTGCTCACACAGACCTACTCCCTGACCCAAGAGAGTAAGTTTACACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCACACAGACCTACTCCCTGACCCAAGAGAGTAAGTTTACACAAAA  750

seq1  TTGAAAAAGTAAGAAAAAATTTAGTCGTCTGGAAAGATATAATTATACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGTAAGAAAAAATTTAGTCGTCTGGAAAGATATAATTATACTG  800

seq1  TTTCAAGATGAGACATATGAGATAAATGTGTTTATTTTTTCATTTTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATGAGACATATGAGATAAATGTGTTTATTTTTTCATTTTTATG  850

seq1  CTAAGAAAAACTAAAATGATTTTGAGCTCAGTTTTCTGGGGGTGATACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAAACTAAAATGATTTTGAGCTCAGTTTTCTGGGGGTGATACAG  900

seq1  CAGTTTAACAGCAACAAGTGTAAGCAGT-ATTTCATTAAAGACAAAACAA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGTTTAACAGCAACAAGTGTAAGCAGTAATTTCATTAAAGACAAAACAA  950

seq1  TAACAC-AAACAAACAGAAACCAAAATTC-TCTTTTCATTAATGTCCTTG  997
      |||||| ||||||||||||| | |||||| |||||||||||||||| | |
seq2  TAACACAAAACAAACAGAAAACCAAATTCTTCTTTTCATTAATGTCTTGG  1000

seq1  GCTG-TAAATACTGT-AGTAAAAGATTAGC-TAAG-ACTAAATC  1037
      |||| ||| |||||| ||||||  |||||| |||| ||||||||
seq2  GCTGTTAATTACTGTAAGTAAAGAATTAGCTTAAGAACTAAATC  1044