BAC Information

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BAC

Clone NameB6Ng01-325A13
Chromosome2 (Build37)
Map Location 166,730,473 - 166,880,012
singlet/doubletdoublet
Overlap geneLOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105
Upstream geneLOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2
Downstream gene1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325A13.bB6Ng01-325A13.g
ACCGA113196GA113197
length1,1731,117
definitionB6Ng01-325A13.b B6Ng01-325A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,730,473 - 166,731,661)(166,878,895 - 166,880,012)
sequence
gaattcatggcaagctaggcagcctgtcctttactggctaaaacgcaaag
tgagccagctactcctggacccagagacaggaaggaacacatatcagtgc
agtaaagtggggtaagcttgtagcagagaggaacagagaaggcaagctaa
gctggcttcttcagcccggtcttactacagaacactaggcttcagtcttg
atcaaaaacctgcttctagaccttcacctttctttgcttgcgaggcgtac
agtcacacaactgtctcctggcttttgaaaagataagatttctcttgttc
aagggtcaaatgaacatcccagttacctttaagttgccaccaactacatc
gtcgtctgaaaaaaaaaatttttttttgagaaaggatctcactgtgtagc
tatgcctggcctctgtgtagaccatgctgggcttaaataaatggcgattg
tcttgcttctgcctcccaagtgccaagtggtaacaagcatgagccatcgc
cttcagcttctgaaatcatgtgtgtgtgagtgaatgaatgtgggtgtctt
catccattgctctcttagttttcaaggctggatctcttatggaaacagaa
gctcaccaattagctagacaggccggccagtaagccccagcgatcttcct
gtgtctgcctccccaggtacggaattgtagtcaggctggcttttatgtgg
gtgctggggattcgaactcccgtcttcttccttgcgcagctatcacttgc
ttaaccaagcgtgctatcccctagcttgaaattcttactcattcgtttat
tctatttgtcctagaacagacgctctgctctgtcccttcgctcaggcgtg
aacgagcacgttccatccaacagttagaagccactaggagccactcgcag
aacctgctagggtctgaggaaagaaacccaaaacagaagcctgcgtcaaa
aggcacggtctctgtgacgtcaccgcagacccgagcatggttcggattgg
cctcgcagccggggtggggccaagcattcctgctcaacccgcgtcccggt
ctcactcgcacaatgcgcagtggccgccacctagccgccgcgcaattgcc
agttggatgtgaggcggagcaccgctggaatggggtagttccgctgcagc
ttcccctggattccctctcggtc
gaattcactctgtagaccaggctggcctcgaactcaggaatccacctgcc
tctgcctcccgagtgctgggattaaaggcatgagccaccatacccggctc
tgacccgtatttatccctgtggttttgtgtacatttttatttaacaatat
gcatacaaccatgcttgtatgtgacttgctttgagtttattatttatgtt
aacagatatgtaaagactgctaaattaacttcccaaagcatatacaaaat
tagacagggaggcagaagcaagtcttcaaagtattgataagtaagggcaa
ttcatgattttttttttattaaattagacatgatggctcacacttttttt
ttacgatttatttattattatatttgttattatatctaagatgcaccaga
agagggcgtcagatctcattacagatggttgtgagccaccatgtggttgc
tggaatttgaactcaggacctctggaagagcagtcagtgcccttaaccac
tgagccatctctccagccctgatggctcacacttttaatcctagtactca
agaggcagagacgagtggatctctgtgacttcgatctctgtgaaactggt
ctgcatagtgagtcccctgacagctacgctacagagggagagctttaaaa
aaacaaaaggttttgctggcatggtatccccagcacttgggaaatggaaa
caagatgaggattttctgttgctaccatgttcaaggtcggcttgtagcta
tatctctgccctcccaaacaaagacattgagcagaatagaaagtttcttt
gtaataagaagagctgctgtgataggagcgtgtgcaggggagagggggag
gagcagcccatttaggattctgggtgaatcagactttttcggccaagcca
actgatactgggttttgttccttcgagatatgaagttttcttggctcact
aattttagtaatacctttttagaaataacctgctcccatttctaaagtca
catggctcccttcttgctaaccctcttcccagtccctctttagccaaatg
aaattaaagtgatttctgtgtatcatgcaaggaataaacacatgaagctt
caacacttacgctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_166730473_166731661
seq2: B6Ng01-325A13.b_46_1218

seq1  GAATTCATGGCAAGCTAGGCAGCCTGTCCTTTACTGGCTAAAACGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAAGCTAGGCAGCCTGTCCTTTACTGGCTAAAACGCAAAG  50

seq1  TGAGCCAGCTACTCCTGGACCCAGAGACAGGAAGGAACACATATCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGCTACTCCTGGACCCAGAGACAGGAAGGAACACATATCAGTGC  100

seq1  AGTAAAGTGGGGTAAGCTTGTAGCAGAGAGGAACAGAGAAGGCAAGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGGGGTAAGCTTGTAGCAGAGAGGAACAGAGAAGGCAAGCTAA  150

seq1  GCTGGCTTCTTCAGCCCGGTCTTACTACAGAACACTAGGCTTCAGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCTTCAGCCCGGTCTTACTACAGAACACTAGGCTTCAGTCTTG  200

seq1  ATCAAAAACCTGCTTCTAGACCTTCACCTTTCTTTGCTTGCGAGGCGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACCTGCTTCTAGACCTTCACCTTTCTTTGCTTGCGAGGCGTAC  250

seq1  AGTCACACAACTGTCTCCTGGCTTTTGAAAAGATAAGATTTCTCTTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACAACTGTCTCCTGGCTTTTGAAAAGATAAGATTTCTCTTGTTC  300

seq1  AAGGGTCAAATGAACATCCCAGTTACCTTTAAGTTGCCACCAACTACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAAATGAACATCCCAGTTACCTTTAAGTTGCCACCAACTACATC  350

seq1  GTCGTCTGAAAAAAAAAATTTTTTTTTGAGAAAGGATCTCACTGTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTCTGAAAAAAAAAATTTTTTTTTGAGAAAGGATCTCACTGTGTAGC  400

seq1  TATGCCTGGCCTCTGTGTAGACCATGCTGGGCTTAAATAAATGGCGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGGCCTCTGTGTAGACCATGCTGGGCTTAAATAAATGGCGATTG  450

seq1  TCTTGCTTCTGCCTCCCAAGTGCCAAGTGGTAACAAGCATGAGCCATCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTCTGCCTCCCAAGTGCCAAGTGGTAACAAGCATGAGCCATCGC  500

seq1  CTTCAGCTTCTGAAATCATGTGTGTGTGAGTGAATGAATGTGGGTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTCTGAAATCATGTGTGTGTGAGTGAATGAATGTGGGTGTCTT  550

seq1  CATCCATTGCTCTCTTAGTTTTCAAGGCTGGATCTCTTATGGAAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTGCTCTCTTAGTTTTCAAGGCTGGATCTCTTATGGAAACAGAA  600

seq1  GCTCACCAATTAGCTAGACAGGCCGGCCAGTAAGCCCCAGCGATCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCAATTAGCTAGACAGGCCGGCCAGTAAGCCCCAGCGATCTTCCT  650

seq1  GTGTCTGCCTCCCCAGGTACGGAATTGTAGTCAGGCTGGCTTTTATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCCTCCCCAGGTACGGAATTGTAGTCAGGCTGGCTTTTATGTGG  700

seq1  GTGCTGGGGATTCGAACTCCCGTCTTCTTCCTTGCGCAGCTATCACTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGATTCGAACTCCCGTCTTCTTCCTTGCGCAGCTATCACTTGC  750

seq1  TTAACCAAGCGTGCTATCCCCTAGCTTGAAATTCTTACTCATTCGTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAGCGTGCTATCCCCTAGCTTGAAATTCTTACTCATTCGTTTAT  800

seq1  TCTATTTGTCCTAGAACAGACGCTCTGCTCTGTCCCTTCGCTCAGGCGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTCCTAGAACAGACGCTCTGCTCTGTCCCTTCGCTCAGGCGTG  850

seq1  AACGAGCACGTTCCATCCAACAGTTAGAAGCCACTAGGAGCCACTCGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGCACGTTCCATCCAACAGTTAGAAGCCACTAGGAGCCACTCGCAG  900

seq1  AACCTGCTAGGGTCTGAGGAAAGAAACCCAAAACAGAAGCCTGCGTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTAGGGTCTGAGGAAAGAAACCCAAAACAGAAGCCTGCGTCAAA  950

seq1  AGGCACGGTCTCTTGTGACGTCACCGCAGACCCGAGCAATGGTTCCGATT  1000
      |||||||||||| |||||||||||||||||||||||| ||||||| ||||
seq2  AGGCACGGTCTC-TGTGACGTCACCGCAGACCCGAGC-ATGGTTCGGATT  998

seq1  GGCCCTCGCAGCCGGGGTGGGGCCAAAGCATTCCTGGCTCCACCCCGCGT  1050
      || ||||||||||||||||||||| |||||||||| ||| || |||||||
seq2  GG-CCTCGCAGCCGGGGTGGGGCC-AAGCATTCCT-GCT-CAACCCGCGT  1044

seq1  CCCGGTCTCACTCGCAC-ATGCGCAGTGGCCGCCACCTTAGCCGCCGCGC  1099
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  CCCGGTCTCACTCGCACAATGCGCAGTGGCCGCCACC-TAGCCGCCGCGC  1093

seq1  CATTTTGCCAGGGTTTGAATGTGAGGCGGAGCAGCGGCTGGAGTGGGGTA  1149
       |  |||||||   ||| ||||||||||||||| | |||||| |||||||
seq2  AA--TTGCCAG---TTGGATGTGAGGCGGAGCA-CCGCTGGAATGGGGTA  1137

seq1  GTGTCGGCTGCAGCTCTCGCTTGGGATTCCCTCCTCGGTC  1189
      || || |||||||||  | ||  ||||||||| |||||||
seq2  GT-TCCGCTGCAGCTTCCCCT--GGATTCCCT-CTCGGTC  1173

seq1: chr2_166878895_166880012
seq2: B6Ng01-325A13.g_67_1183 (reverse)

seq1  ACCCAAGCGTAAGTGTGTGAAGACTCATGTG-TTAATCCCTGCATGAATA  49
      |||| ||||||||||| |||||  ||||||| ||| ||| |||||| |||
seq2  ACCC-AGCGTAAGTGT-TGAAGCTTCATGTGTTTATTCCTTGCATG-ATA  47

seq1  CACAGGAAAATCA--TTTATGTCATTTGCTTAAGGAAGGGACTGGGGAGG  97
      |||||  ||||||  || || |||||||  ||| | |||||||||| || 
seq2  CACAG--AAATCACTTTAATTTCATTTGGCTAAAG-AGGGACTGGGAAGA  94

seq1  GGGGTAGC-AGGAGGGAGCCATGTGACTTTTAGAAATGTGAGCA-GTTAT  145
      ||| |||| || ||||||||||||||| |||||||||| ||||| |||||
seq2  GGGTTAGCAAGAAGGGAGCCATGTGAC-TTTAGAAATGGGAGCAGGTTAT  143

seq1  TTCTTAAAAGGTAATACTAAAATTAGTGAGCC-AGAAAACTTCATATCTC  194
      |||| |||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTCTAAAAAGGTATTACTAAAATTAGTGAGCCAAGAAAACTTCATATCTC  193

seq1  GAAGGAACAAAACCCAGTATCAGTTGGCTTGGCCTGAAAAGTCTGATTCA  244
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  GAAGGAACAAAACCCAGTATCAGTTGGCTTGGCCGAAAAAGTCTGATTCA  243

seq1  CCCAGAATCCTAAATGGGCTGCTCCTCCCCCTCTCCCCTGCACACGCTCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATCCTAAATGGGCTGCTCCTCCCCCTCTCCCCTGCACACGCTCC  293

seq1  TATCACAGCAGCTCTTCTTATTACAAAGAAACTTTCTATTCTGCTCAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGCAGCTCTTCTTATTACAAAGAAACTTTCTATTCTGCTCAATG  343

seq1  TCTTTGTTTGGGAGGGCAGAGATATAGCTACAAGCCGACCTTGAACATGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTGGGAGGGCAGAGATATAGCTACAAGCCGACCTTGAACATGG  393

seq1  TAGCAACAGAAAATCCTCATCTTGTTTCCATTTCCCAAGTGCTGGGGATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAGAAAATCCTCATCTTGTTTCCATTTCCCAAGTGCTGGGGATA  443

seq1  CCATGCCAGCAAAACCTTTTGTTTTTTTAAAGCTCTCCCTCTGTAGCGTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCAGCAAAACCTTTTGTTTTTTTAAAGCTCTCCCTCTGTAGCGTA  493

seq1  GCTGTCAGGGGACTCACTATGCAGACCAGTTTCACAGAGATCGAAGTCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGGGGACTCACTATGCAGACCAGTTTCACAGAGATCGAAGTCAC  543

seq1  AGAGATCCACTCGTCTCTGCCTCTTGAGTACTAGGATTAAAAGTGTGAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCACTCGTCTCTGCCTCTTGAGTACTAGGATTAAAAGTGTGAGC  593

seq1  CATCAGGGCTGGAGAGATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGCTGGAGAGATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTC  643

seq1  CAGAGGTCCTGAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCCTGAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCAT  693

seq1  CTGTAATGAGATCTGACGCCCTCTTCTGGTGCATCTTAGATATAATAACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGAGATCTGACGCCCTCTTCTGGTGCATCTTAGATATAATAACA  743

seq1  AATATAATAATAAATAAATCGTAAAAAAAAAGTGTGAGCCATCATGTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATAATAAATAAATCGTAAAAAAAAAGTGTGAGCCATCATGTCTA  793

seq1  ATTTAATAAAAAAAAAATCATGAATTGCCCTTACTTATCAATACTTTGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAAAAAAAAATCATGAATTGCCCTTACTTATCAATACTTTGAA  843

seq1  GACTTGCTTCTGCCTCCCTGTCTAATTTTGTATATGCTTTGGGAAGTTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTTCTGCCTCCCTGTCTAATTTTGTATATGCTTTGGGAAGTTAA  893

seq1  TTTAGCAGTCTTTACATATCTGTTAACATAAATAATAAACTCAAAGCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGTCTTTACATATCTGTTAACATAAATAATAAACTCAAAGCAAG  943

seq1  TCACATACAAGCATGGTTGTATGCATATTGTTAAATAAAAATGTACACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACAAGCATGGTTGTATGCATATTGTTAAATAAAAATGTACACAA  993

seq1  AACCACAGGGATAAATACGGGTCAGAGCCGGGTATGGTGGCTCATGCCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGGGATAAATACGGGTCAGAGCCGGGTATGGTGGCTCATGCCTT  1043

seq1  TAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTCCTGAGTTCGAGGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTCCTGAGTTCGAGGC  1093

seq1  CAGCCTGGTCTACAGAGTGAATTC  1118
      ||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAATTC  1117