BAC Information

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BAC

Clone NameB6Ng01-325C20
Chromosome2 (Build37)
Map Location 116,650,586 - 116,790,182
singlet/doubletdoublet
Overlap geneTmco5
Upstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464
Downstream geneLOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325C20.bB6Ng01-325C20.g
ACCGA113302GA113303
length1,1781,164
definitionB6Ng01-325C20.b B6Ng01-325C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,788,989 - 116,790,182)(116,650,586 - 116,651,766)
sequence
gaattcccaggggctgatctatgtcatgaagtaagttctccacaagtagt
tcttgagaaagaatgtgtggggttgccgacagggaggacggcgcgttcta
accatgtcccagaagttacttcgttcggtaacactccagaatctgtcctt
tcttctccatttccactttccttcccttactccttgaagcaaaagagaag
ctgattttaggttttagttacctagtcatgggagacccacatttgctgtg
acgttccaagcagagaagagaaaaggaggtatattctcagacagtgaagt
ctgcagagagcattgcttgccgtcctgttctcagagaggaggctgctcgt
caggcaacacgaggccgttgtaggtgtttaattctggcaacccttcagga
aatagccctttgaataatgtggaagggctctaaataggatcaaacacagg
tccagggatcgagctcgttattttcctaggttccaaggacacaatacttg
acaaagcaatttatggaagagtttattcagactccagcttgaggaggact
ccgtcccggcagggaggcatgatggtggaagcgtgcactgctaatcacac
tgcacctacaagtgcaaaacagagagagggacgctgctgccgagccagcc
ttcctcttttctagtgcaaacccctagcccatgaaatgctgctacccact
ttcatggtatgccttccctcctcagttaagactttctggaaaccatagac
acacttggaggtgtgtttccatggtgattctaaataaagtcaggctgaca
atgaagatgtaccatcgagggaaacctcctctccaggtcctcctttccca
tgggtaagtttaatcgtcttcgtcttggtatctgtgccttccttttgagg
ttactccccaatcctaaagaatagtccttgatttgcaaatcaccccttta
catttcgagatgcaaaactgtgatcttgagagcttgtctagagggtttag
tagtcaaggtggcttcttctatacacctggctggagatggtcttcccttg
ttaggggcaagagccatcagtgactcagtgattcttggagcttacccact
agtgtgatgaagaaagaggagttgcttacttcgcaggttagccaatcact
tgcacgttggctgactatgccatagtcc

gaattcccatatagtgctagaatcagagcggggaaaaggagagctaaaaa
ttttaaattacatacaagtgaaaaatggcttttcttctttgtgatcaagc
ttcctttgtgaaaggatggagttctacaactctactcccccagaggaagg
tagcttgggccagtatgttgtgttattccattagtttgtgttttaagact
aagaaaagatatttctgtgttataaattatttataaacacaagaacaaag
ggaggctgtcagggctgccgctattttgagaaaataaaaaagaaatgata
aatttatggagaacccaatttgataaagagggaggagatgcaatggctaa
ttatgaacatccatcggcagacagagacccgagagcagagaattagatgg
atacatttacatctgtctgtcaccaaaagaaatctcactaatggtgttcc
gccctgtcaccagactccccccatccagactggaaagacttaagagacat
gcaaagatattttaatcaagaacaggccacagaagaaatgcaaagaactt
gggatgtggacgctggaaaacaacttcacttctgcccgcaccctttcttc
actcatcaaacatgatcgtaaactcccgtggtcttggtgtttgtatggca
tctgggatggtctgcacaggttttgaaggcttttctattttagcagcagc
atgccacaagccattgatgccaagcacggtgtagaagacaagatacaata
aacaatgggggtgtaagaatgtgttttgttttattctattctattttatt
ttattccagtgctcaacctatctcttgtcttctggacttggctttcaagg
gtgggagggaacagaaaacaggatgctttcaagcacacaatctttttctt
gaatgggaggaaaggacaagtatattaagaatttgtcagaaaagaagtgt
tccctgcctgcctgcagcttgttcaggaaggacagagttcttctttctca
aacaccgagtttaggcctgtgggactcagagaggatttcgtttcacttca
ccttatcgtcttgattcaagttgcaagttcatctattcatacttggggaa
tgccaatcactcgaaaattggcatttttatctgtgcaccttaaagcaagc
atgagtctggttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_116788989_116790182
seq2: B6Ng01-325C20.b_48_1225 (reverse)

seq1  GGACTATGGCATTAGTCACCCCACTGTTTGCAAGGGTTGATTGGGCTAAC  50
      ||||||||||| |||||| || ||    ||||||   ||||| |||||||
seq2  GGACTATGGCA-TAGTCAGCCAAC---GTGCAAG---TGATT-GGCTAAC  42

seq1  CTGGCCGAGTAGGCCAACTTCCTCTTTCTCCATCACCACTATGTGTGTAA  100
      || ||  |||| | |||| |||||||||| ||||| ||||| ||| ||||
seq2  CT-GCGAAGTAAG-CAAC-TCCTCTTTCTTCATCA-CACTA-GTGGGTAA  87

seq1  CCCTCCAAG-ATCACTGA-TCACTGATGCCTTCCTGCCCCT-ACAAAGGA  147
        ||||||| |||||||| ||||||||| | || ||||||| |||| |||
seq2  -GCTCCAAGAATCACTGAGTCACTGATGGC-TCTTGCCCCTAACAAGGGA  135

seq1  AGACCATCCTCCAGCCAGGTGTATAGAAGAAGCCACCCTTGACTACTAAA  197
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACCAT-CTCCAGCCAGGTGTATAGAAGAAGCCA-CCTTGACTACTAAA  183

seq1  CCCTCTAGACAAGCTCTCAAGATCACAGTTTTTGCATCTTCGAAATGTAA  247
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CCCTCTAGACAAGCTCTCAAGATCACAG-TTTTGCATC-TCGAAATGTAA  231

seq1  A-GGGTGATTTTGCAAATCAAGGACTATTCTTTAGGATTGGGGAGTAACC  296
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGA-TTTGCAAATCAAGGACTATTCTTTAGGATTGGGGAGTAACC  280

seq1  TCAAAAGGAAGGCACAGATACCAAGACGAAGACGATTAAACTTACCCATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGAAGGCACAGATACCAAGACGAAGACGATTAAACTTACCCATG  330

seq1  GGAAAGGAGGACCTGGAGAGGAGGTTTCCCTCGATGGTACATCTTCATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGGACCTGGAGAGGAGGTTTCCCTCGATGGTACATCTTCATTG  380

seq1  TCAGCCTGACTTTATTTAGAATCACCATGGAAACACACCTCCAAGTGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGACTTTATTTAGAATCACCATGGAAACACACCTCCAAGTGTGT  430

seq1  CTATGGTTTCCAGAAAGTCTTAACTGAGGAGGGAAGGCATACCATGAAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTTTCCAGAAAGTCTTAACTGAGGAGGGAAGGCATACCATGAAAG  480

seq1  TGGGTAGCAGCATTTCATGGGCTAGGGGTTTGCACTAGAAAAGAGGAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCAGCATTTCATGGGCTAGGGGTTTGCACTAGAAAAGAGGAAGG  530

seq1  CTGGCTCGGCAGCAGCGTCCCTCTCTCTGTTTTGCACTTGTAGGTGCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCGGCAGCAGCGTCCCTCTCTCTGTTTTGCACTTGTAGGTGCAGT  580

seq1  GTGATTAGCAGTGCACGCTTCCACCATCATGCCTCCCTGCCGGGACGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAGCAGTGCACGCTTCCACCATCATGCCTCCCTGCCGGGACGGAG  630

seq1  TCCTCCTCAAGCTGGAGTCTGAATAAACTCTTCCATAAATTGCTTTGTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCAAGCTGGAGTCTGAATAAACTCTTCCATAAATTGCTTTGTCA  680

seq1  AGTATTGTGTCCTTGGAACCTAGGAAAATAACGAGCTCGATCCCTGGACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTGTCCTTGGAACCTAGGAAAATAACGAGCTCGATCCCTGGACC  730

seq1  TGTGTTTGATCCTATTTAGAGCCCTTCCACATTATTCAAAGGGCTATTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGATCCTATTTAGAGCCCTTCCACATTATTCAAAGGGCTATTTC  780

seq1  CTGAAGGGTTGCCAGAATTAAACACCTACAACGGCCTCGTGTTGCCTGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGTTGCCAGAATTAAACACCTACAACGGCCTCGTGTTGCCTGAC  830

seq1  GAGCAGCCTCCTCTCTGAGAACAGGACGGCAAGCAATGCTCTCTGCAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTCCTCTCTGAGAACAGGACGGCAAGCAATGCTCTCTGCAGAC  880

seq1  TTCACTGTCTGAGAATATACCTCCTTTTCTCTTCTCTGCTTGGAACGTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTCTGAGAATATACCTCCTTTTCTCTTCTCTGCTTGGAACGTCA  930

seq1  CAGCAAATGTGGGTCTCCCATGACTAGGTAACTAAAACCTAAAATCAGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGTGGGTCTCCCATGACTAGGTAACTAAAACCTAAAATCAGCT  980

seq1  TCTCTTTTGCTTCAAGGAGTAAGGGAAGGAAAGTGGAAATGGAGAAGAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGCTTCAAGGAGTAAGGGAAGGAAAGTGGAAATGGAGAAGAAA  1030

seq1  GGACAGATTCTGGAGTGTTACCGAACGAAGTAACTTCTGGGACATGGTTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATTCTGGAGTGTTACCGAACGAAGTAACTTCTGGGACATGGTTA  1080

seq1  GAACGCGCCGTCCTCCCTGTCGGCAACCCCACACATTCTTTCTCAAGAAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGCGCCGTCCTCCCTGTCGGCAACCCCACACATTCTTTCTCAAGAAC  1130

seq1  TACTTGTGGAGAACTTACTTCATGACATAGATCAGCCCCTGGGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGGAGAACTTACTTCATGACATAGATCAGCCCCTGGGAATTC  1178


seq1: chr2_116650586_116651766
seq2: B6Ng01-325C20.g_67_1230

seq1  GAATTCCCATATAGTGCTAGAATCAGAGCGGGGAAAAGGAGAGCTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATATAGTGCTAGAATCAGAGCGGGGAAAAGGAGAGCTAAAAA  50

seq1  TTTTAAATTACATACAAGTGAAAAATGGCTTTTCTTCTTTGTGATCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTACATACAAGTGAAAAATGGCTTTTCTTCTTTGTGATCAAGC  100

seq1  TTCCTTTGTGAAAGGATGGAGTTCTACAACTCTACTCCCCCAGAGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTGAAAGGATGGAGTTCTACAACTCTACTCCCCCAGAGGAAGG  150

seq1  TAGCTTGGGCCAGTATGTTGTGTTATTCCATTAGTTTGTGTTTTAAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGGCCAGTATGTTGTGTTATTCCATTAGTTTGTGTTTTAAGACT  200

seq1  AAGAAAAGATATTTCTGTGTTATAAATTATTTATAAACACAAGAACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGATATTTCTGTGTTATAAATTATTTATAAACACAAGAACAAAG  250

seq1  GGAGGCTGTCAGGGCTGCCGCTATTTTGAGAAAATAAAAAAGAAATGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGTCAGGGCTGCCGCTATTTTGAGAAAATAAAAAAGAAATGATA  300

seq1  AATTTATGGAGAACCCAATTTGATAAAGAGGGAGGAGATGCAATGGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGGAGAACCCAATTTGATAAAGAGGGAGGAGATGCAATGGCTAA  350

seq1  TTATGAACATCCATCGGCAGACAGAGACCCGAGAGCAGAGAATTAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACATCCATCGGCAGACAGAGACCCGAGAGCAGAGAATTAGATGG  400

seq1  ATACATTTACATCTGTCTGTCACCAAAAGAAATCTCACTAATGGTGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTACATCTGTCTGTCACCAAAAGAAATCTCACTAATGGTGTTCC  450

seq1  GCCCTGTCACCAGACTCCCCCCATCCAGACTGGAAAGACTTAAGAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTCACCAGACTCCCCCCATCCAGACTGGAAAGACTTAAGAGACAT  500

seq1  GCAAAGATATTTTAATCAAGAACAGGCCACAGAAGAAATGCAAAGAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGATATTTTAATCAAGAACAGGCCACAGAAGAAATGCAAAGAACTT  550

seq1  GGGATGTGGACGCTGGAAAACAACTTCACTTCTGCCCGCACCCTTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGGACGCTGGAAAACAACTTCACTTCTGCCCGCACCCTTTCTTC  600

seq1  ACTCATCAAACATGATCGTAAACTCCCGTGGTCTTGGTGTTTGTATGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAAACATGATCGTAAACTCCCGTGGTCTTGGTGTTTGTATGGCA  650

seq1  TCTGGGATGGTCTGCACAGGTTTTGAAGGCTTTTCTATTTTAGCAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATGGTCTGCACAGGTTTTGAAGGCTTTTCTATTTTAGCAGCAGC  700

seq1  ATGCCACAAGCCATTGATGCCAAGCACGGTGTAGAAGACAAGATACAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACAAGCCATTGATGCCAAGCACGGTGTAGAAGACAAGATACAATA  750

seq1  AACAATGGGGGTGTAAGAATGTGTTTTGTTTTATTCTATTCTATTTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGGGGTGTAAGAATGTGTTTTGTTTTATTCTATTCTATTTTATT  800

seq1  TTATTCCAGTGCTCAACCTATCTCTTGTCTTCTGGACTTGGCTTTCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAGTGCTCAACCTATCTCTTGTCTTCTGGACTTGGCTTTCAAGG  850

seq1  GTGGGAGGGAACAGAAAACAGGATGCTTTCAAAGCACACAATC-TTTTCT  899
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GTGGGAGGGAACAGAAAACAGGATGCTTTC-AAGCACACAATCTTTTTCT  899

seq1  TGAATGGGAGGGAAGGACAAGTATATTAAGAATTTGTCAGAAAAGAAGTG  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGGAGGAAAGGACAAGTATATTAAGAATTTGTCAGAAAAGAAGTG  949

seq1  TTCCCTGCCTGCCTGCAGCTTGTTCAGGGAAGGACAAGAGTTCTTCTTTC  999
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TTCCCTGCCTGCCTGCAGCTTGTTCA-GGAAGGAC-AGAGTTCTTCTTTC  997

seq1  TCAAACA-CGAGTTTAAGCCTGTGGGACCCAGAGAGGGTTTCCGTTTCAA  1048
      ||||||| |||||||| ||||||||||| |||||||| ||| |||||| |
seq2  TCAAACACCGAGTTTAGGCCTGTGGGACTCAGAGAGGATTT-CGTTTC-A  1045

seq1  CTTCACCCTTATCGTCTTGTTTTCAGTTGCAAGGTCATCTATCTATACTT  1098
      ||||| ||||||||||||| ||  ||||||||| ||||||||  ||||||
seq2  CTTCA-CCTTATCGTCTTGATTCAAGTTGCAAGTTCATCTATTCATACTT  1094

seq1  GGGAGATTGCAAATCACCTTCGAAAAATTTGGGGCACTATTTTTATCTGT  1148
      ||| || ||| ||||||  |||||||  ||||      ||||||||||||
seq2  GGG-GAATGCCAATCAC--TCGAAAA--TTGG-----CATTTTTATCTGT  1134

seq1  GACCCCTCTACACCCAAGCCATGAG-CTGGTTCC  1181
      | | ||| || |  |||| |||||| ||||||||
seq2  G-CACCT-TA-AAGCAAG-CATGAGTCTGGTTCC  1164


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