BAC Information

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BAC

Clone NameB6Ng01-325G14
Chromosome2 (Build37)
Map Location 107,337,924 - 107,452,118
singlet/doubletdoublet
Overlap genenone
Upstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G14.bB6Ng01-325G14.g
ACCGA113477GA113478
length1,1931,130
definitionB6Ng01-325G14.b B6Ng01-325G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,337,924 - 107,339,141)(107,450,979 - 107,452,118)
sequence
gaattcagtgaatatgtagtgatcatattattactatcaagattaagatt
aataatttaaaaatgattatctccctagcatattctttcagctatgtcac
tagctcattgacctactcttatgcattttgaaaaattgatatgatttatt
ttccctatcttttatggaagttgaatgtcattggaagattaatgataata
aaggcagtaattattgagcaatcagtacatgataggcaccattacaaaca
ttttacccaaattaacttgttgagtacctgctcgcaagagcacttttagg
aaacacaatgataatatttttgtcccttttttacaacagacaaagctaga
catgcaattatactgagacacaaactggttaagagcagtccagccaatga
ggcagtgtgttgacttacccaagatatacaactttgaaatctgtacacaa
aatgtgctcagctgtgtttaccagttcggaattcatttgatgagtgactg
agtatttctaatgtcaacaccaaatttttcatttaatcagtttgaattta
agtcagtttgatttttgccctgtataatgattttgatttctcatgagtgt
tattttattataatttcagttaaaaaaattcaacttttccaccatattaa
tgactacacaattacctacaaatctgatgttattttcatcaaaagatcaa
gagaatgagcttctttactggatgctctgtggagtccatttatgcttcca
tctcctaagtgcagaagaacctgcatttacatgggagactctcctttctg
catgccatcacatagaccgcttgtctaggtttcctgagttctgagagtaa
aggttcttactaccacgactgaacttatattccacttgctggtgtctcct
tttacttaatctatgcatttctcttcttctcttagctcagcttgctcttt
ttattatagacctgcatagagtgaacactcataaccacagaattgatact
agactattttgagatttcctctgtcacacaatatcaaatcttcttattta
ccttaggtagattttttttaacaagcaaaacatagccatatttctttaac
aaaattcacaagaacaatttctaccataatatatattctctgtaaaactc
tggactggtccaagtcagttaccttcacattactgtctcacgg

gaattccagggagttgtctcacatgagcacacgagcgtttaacttagata
ctgagcaattacatatccatcatcctgggtctcagccacacgtggtaaat
ttctatttagtaaccgtgtgctgtccttttctgactccaagctttcaagt
cactgaacttgacaaaacctccatgatcgttaatctctaaaacacactgt
tgaacatgattcagcctatgagcaatcatcctcaatagtgctagttctcc
agtcctgattaagtccactgggagtgaaatgtgtttcatgcacttccctt
gcattccactgaccatttagtttattctatctagcgatatattaatttaa
tgtaaacgttttcctgtagcagtacgaagagctgttacacccaaacatgg
tgagcacctctaaaggctttaattggattgcttaatttatctctcactgc
agctctgtgagttagaaactattactgcaccattttacacaagaaaaaaa
aaatgaaaggaatagtagttatcatgaaaacaatgattctttgcaaaggg
tgcatttctagattatatttctagattatagcctttaaatcctgatgctc
tagctctagagtccacaatcttctctgttctgctgtcattaccctctctg
acaaaagttggacatgaaccaacattgagtacttaggtagtgcttagaat
catgcttcgggtttaataaatgctcagtgaagttctgagagcaacataga
gcaagtaaaccatccgcagacatttagttggattcaaatagcaaaacaaa
aaactcctttcctgaaacaaaaacaagaccaaaagtcctttgctcctttt
aaaagttttatcagctgagcttgggcatttttaatttttactaatcttgg
taaagtgcgtaatctggcgcatgtttaattgcataataaatgttagtgtt
atctataaagctttttttatgccattgttattattattatgtatatagtg
agttcagcaggagtgtttgtgtttccatgccaaacagaaaacatgcatgt
tgagaagctaaatggcaagggctgaaaccacttgctgtcatttcaggggg
atgccagaccccactgcttcaactatctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_107337924_107339141
seq2: B6Ng01-325G14.b_43_1235

seq1  GAATTCAGTGAATATGTAGTGATCATATTATTACTATCAAGATTAAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAATATGTAGTGATCATATTATTACTATCAAGATTAAGATT  50

seq1  AATAATTTAAAAATGATTATCTCCCTAGCATATTCTTTCAGCTATGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTAAAAATGATTATCTCCCTAGCATATTCTTTCAGCTATGTCAC  100

seq1  TAGCTCATTGACCTACTCTTATGCATTTTGAAAAATTGATATGATTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATTGACCTACTCTTATGCATTTTGAAAAATTGATATGATTTATT  150

seq1  TTCCCTATCTTTTATGGAAGTTGAATGTCATTGGAAGATTAATGATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATCTTTTATGGAAGTTGAATGTCATTGGAAGATTAATGATAATA  200

seq1  AAGGCAGTAATTATTGAGCAATCAGTACATGATAGGCACCATTACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTAATTATTGAGCAATCAGTACATGATAGGCACCATTACAAACA  250

seq1  TTTTACCCAAATTAACTTGTTGAGTACCTGCTCGCAAGAGCACTTTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCAAATTAACTTGTTGAGTACCTGCTCGCAAGAGCACTTTTAGG  300

seq1  AAACACAATGATAATATTTTTGTCCCTTTTTTACAACAGACAAAGCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATGATAATATTTTTGTCCCTTTTTTACAACAGACAAAGCTAGA  350

seq1  CATGCAATTATACTGAGACACAAACTGGTTAAGAGCAGTCCAGCCAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTATACTGAGACACAAACTGGTTAAGAGCAGTCCAGCCAATGA  400

seq1  GGCAGTGTGTTGACTTACCCAAGATATACAACTTTGAAATCTGTACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTGTTGACTTACCCAAGATATACAACTTTGAAATCTGTACACAA  450

seq1  AATGTGCTCAGCTGTGTTTACCAGTTCGGAATTCATTTGATGAGTGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTCAGCTGTGTTTACCAGTTCGGAATTCATTTGATGAGTGACTG  500

seq1  AGTATTTCTAATGTCAACACCAAATTTTTCATTTAATCAGTTTGAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCTAATGTCAACACCAAATTTTTCATTTAATCAGTTTGAATTTA  550

seq1  AGTCAGTTTGATTTTTGCCCTGTATAATGATTTTGATTTCTCATGAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTTGATTTTTGCCCTGTATAATGATTTTGATTTCTCATGAGTGT  600

seq1  TATTTTATTATAATTTCAGTTAAAAAAATTCAACTTTTCCACCATATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTATAATTTCAGTTAAAAAAATTCAACTTTTCCACCATATTAA  650

seq1  TGACTACACAATTACCTACAAATCTGATGTTATTTTCATCAAAAGATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACACAATTACCTACAAATCTGATGTTATTTTCATCAAAAGATCAA  700

seq1  GAGAATGAGCTTCTTTACTGGATGCTCTGTGGAGTCCATTTATGCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAGCTTCTTTACTGGATGCTCTGTGGAGTCCATTTATGCTTCCA  750

seq1  TCTCCTAAGTGCAGAAGAACCTGCATTTACATGGGAGACTCTCCTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGTGCAGAAGAACCTGCATTTACATGGGAGACTCTCCTTTCTG  800

seq1  CATGCCATCACATAGACCGCTTGTCTAGGTTTCCTGAGTTCTGAGAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATCACATAGACCGCTTGTCTAGGTTTCCTGAGTTCTGAGAGTAA  850

seq1  AGGTTCTTACTACCACGACTGAACTTATATTCCACTTGCTGGTGTCTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTACTACCACGACTGAACTTATATTCCACTTGCTGGTGTCTCCT  900

seq1  TTTACTTAATCTATGCATTTCTCTTCTTCTCTTAGCTCAGCTTGCTCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTACTTAATCTATGCATTTCTCTTCTTCTCTTAGCTCAGCTTGCTC-TT  949

seq1  TTTATTATAGACCTGCATAAGAGTGAACACTCATAACCACAAGAATTGAT  1000
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TTTATTATAGACCTGCAT-AGAGTGAACACTCATAACCAC-AGAATTGAT  997

seq1  ACTAGACTATTTTGAGATTTCCTCTGTCAACACAATTAATCCAAAATTCT  1050
      |||||||||||||||||||||||||||| |||||||  |||   || |||
seq2  ACTAGACTATTTTGAGATTTCCTCTGTC-ACACAAT--ATC---AAATCT  1041

seq1  TCTATTTAACCTTAGGTAGATTTTTTTTAACAAAGGCAAAACATAGCCAT  1100
      |||  || |||||||||||||||||||||||||  |||||||||||||||
seq2  TCTTATTTACCTTAGGTAGATTTTTTTTAACAA--GCAAAACATAGCCAT  1089

seq1  A-TTCTTTACCAAAATATCACAAGAACCATTTCTAACCCATATATTAATA  1149
      | ||||||| |||||| |||||||||| |||||||  ||||| ||  |||
seq2  ATTTCTTTAACAAAAT-TCACAAGAACAATTTCTA--CCATA-ATATATA  1135

seq1  TTCTCCTGTAAAAACTCTTGAGCTGGTTTCCACAGTTCAAATTACCCTCA  1199
      |||| |||| |||||||| || ||||  |||| |||   | ||||| |||
seq2  TTCT-CTGT-AAAACTCTGGA-CTGG--TCCA-AGT--CAGTTACCTTCA  1177

seq1  CCATTACTGTCTTCCACGG  1218
       |||||||||||  |||||
seq2  -CATTACTGTCT--CACGG  1193


seq1: chr2_107450979_107452118
seq2: B6Ng01-325G14.g_66_1195 (reverse)

seq1  TGAGATTAAGTTGAAGCAGT-GGGTCTGCATTCCCACCTGAAAATGAACA  49
      ||||||  |||||||||||| |||||||   |||| |||| ||||| |||
seq2  TGAGAT--AGTTGAAGCAGTGGGGTCTGGCATCCC-CCTG-AAATG-ACA  45

seq1  GCAGGTGGTTTCAGCCCTTGCCATTTAGCTTCTCAACATGCATTGTTTTC  99
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCAAGTGGTTTCAGCCCTTGCCATTTAGCTTCTCAACATGCA-TGTTTTC  94

seq1  TGTTTGGCAATGGAAACACAAACACCTCCTGCTGAACTCACTATTATAAC  149
      |||||||| ||||||||||||||| |||||||||||||||||| ||| ||
seq2  TGTTTGGC-ATGGAAACACAAACA-CTCCTGCTGAACTCACTA-TAT-AC  140

seq1  ATAATTAATAATAACAATGGCAATAAAAAAGCTTTATAGATAACACTAAC  199
      |||| |||||||||||||||||  ||||||||||||||||||||||||||
seq2  ATAA-TAATAATAACAATGGCATAAAAAAAGCTTTATAGATAACACTAAC  189

seq1  ATTTATTATGCAATTAAACATGCGCCAGATTACGCACTTTACCAAGATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATGCAATTAAACATGCGCCAGATTACGCACTTTACCAAGATTA  239

seq1  GTAAAAATTAAAAATGCCCAAGCTCAGCTGATAAAACTTTTAAAAGGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATTAAAAATGCCCAAGCTCAGCTGATAAAACTTTTAAAAGGAGC  289

seq1  AAAGGACTTTTGGTCTTGTTTTTGTTTCAGGAAAGGAGTTTTTTGTTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTTTGGTCTTGTTTTTGTTTCAGGAAAGGAGTTTTTTGTTTTG  339

seq1  CTATTTGAATCCAACTAAATGTCTGCGGATGGTTTACTTGCTCTATGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGAATCCAACTAAATGTCTGCGGATGGTTTACTTGCTCTATGTTG  389

seq1  CTCTCAGAACTTCACTGAGCATTTATTAAACCCGAAGCATGATTCTAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAACTTCACTGAGCATTTATTAAACCCGAAGCATGATTCTAAGC  439

seq1  ACTACCTAAGTACTCAATGTTGGTTCATGTCCAACTTTTGTCAGAGAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTAAGTACTCAATGTTGGTTCATGTCCAACTTTTGTCAGAGAGGG  489

seq1  TAATGACAGCAGAACAGAGAAGATTGTGGACTCTAGAGCTAGAGCATCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAGCAGAACAGAGAAGATTGTGGACTCTAGAGCTAGAGCATCAG  539

seq1  GATTTAAAGGCTATAATCTAGAAATATAATCTAGAAATGCACCCTTTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAGGCTATAATCTAGAAATATAATCTAGAAATGCACCCTTTGCA  589

seq1  AAGAATCATTGTTTTCATGATAACTACTATTCCTTTCATTTTTTTTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATTGTTTTCATGATAACTACTATTCCTTTCATTTTTTTTTTCT  639

seq1  TGTGTAAAATGGTGCAGTAATAGTTTCTAACTCACAGAGCTGCAGTGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAATGGTGCAGTAATAGTTTCTAACTCACAGAGCTGCAGTGAGA  689

seq1  GATAAATTAAGCAATCCAATTAAAGCCTTTAGAGGTGCTCACCATGTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTAAGCAATCCAATTAAAGCCTTTAGAGGTGCTCACCATGTTTG  739

seq1  GGTGTAACAGCTCTTCGTACTGCTACAGGAAAACGTTTACATTAAATTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAACAGCTCTTCGTACTGCTACAGGAAAACGTTTACATTAAATTAA  789

seq1  TATATCGCTAGATAGAATAAACTAAATGGTCAGTGGAATGCAAGGGAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCGCTAGATAGAATAAACTAAATGGTCAGTGGAATGCAAGGGAAGT  839

seq1  GCATGAAACACATTTCACTCCCAGTGGACTTAATCAGGACTGGAGAACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAACACATTTCACTCCCAGTGGACTTAATCAGGACTGGAGAACTA  889

seq1  GCACTATTGAGGATGATTGCTCATAGGCTGAATCATGTTCAACAGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTGAGGATGATTGCTCATAGGCTGAATCATGTTCAACAGTGTGT  939

seq1  TTTAGAGATTAACGATCATGGAGGTTTTGTCAAGTTCAGTGACTTGAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGATTAACGATCATGGAGGTTTTGTCAAGTTCAGTGACTTGAAAG  989

seq1  CTTGGAGTCAGAAAAGGACAGCACACGGTTACTAAATAGAAATTTACCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTCAGAAAAGGACAGCACACGGTTACTAAATAGAAATTTACCAC  1039

seq1  GTGTGGCTGAGACCCAGGATGATGGATATGTAATTGCTCAGTATCTAAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCTGAGACCCAGGATGATGGATATGTAATTGCTCAGTATCTAAGT  1089

seq1  TAAACGCTCGTGTGCTCATGTGAGACAACTCCCTGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCTCGTGTGCTCATGTGAGACAACTCCCTGGAATTC  1130


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