BAC Information

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BAC

Clone NameB6Ng01-326L04
Chromosome2 (Build37)
Map Location 96,633,620 - 96,769,501
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326L04.bB6Ng01-326L04.g
ACCGA114443GA114444
length1,1611,156
definitionB6Ng01-326L04.b B6Ng01-326L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,633,620 - 96,634,794)(96,768,351 - 96,769,501)
sequence
gaattctctacagttgatttcttcaagaaagcaagatatttttgtaaatg
taggtaaatccctttccaatttctctccaaaattaagcagttccagttct
agcgttgttgtttgtttgcttgtttgtttgtttgcttccattctggttcc
attagctgaatgtctactgcaaatattagccatatcttaacttctggttg
agtattctaattagaatttatatatatatatatatatatatatatatata
tatatatatatgtacttaatcctataaattactatgatggtggtaattct
ttagtcacctagttcacaaataacttttaatatttcaaagcttaggcctt
gtctgggcagactctgaactagctcatctaagttaatgcaaacacttagc
cctgcccagccactgtggctagctataccttccagttgtgcagtcacatc
agtctactctcatatctcctagtgaatggcacttattccttcttcgcaga
gttattttctcccttccagaaaggcctgctttctactttctgctcagcta
atttgccatcgtatttttattaaaactaattgaagagtgccttaggaagg
tgaggaaggacagagatataaggtcacatagtgtacttcaacatttatac
tttcaaagtgataaatacaccagatttctttttactccttcattagactg
acttgagtaattatccttatttgctgattctacaatctcctataactatt
tctgagcccccataattctaaggaattcttcaaggaaaattttcataatc
ctagaggagtaactgctgccttctctgtcaattgtctttgctctggttag
cctttttggtttttgtttgttgcaattatgttcctgaacatatgcaagac
tgtcttctcattaattaggttctcaactaaagaaaccttatatcaatatt
ttcttggtcaatatacatgcacaaatacccatataaacctaacaacatta
tcatctatagatgtgagaacaattggagacctctgtgatttatgaatata
cctagatgtttggagtccaatgactgtcagatgaattagaccttgctttg
aacgaaactaaaacactcagcatataccctgcctatcatcctccacatac
aagaatagtct

gaattcactaatgtgtaaatcaaatttttgattgattcttaatatacata
tagataaaatgtaagattctacaaagtattcacagatattttactaattc
taaggcttcatagttgaaaatacacacaacagaaaataaatttcagagaa
aacatgaaagttggcttaaagttatgtgtgtcctatccaatttggtacat
ctttaaagaaatggaagcttactactctaaaatggtgacaggcctgaaaa
ttaataaactaacctattttaggaaatcctaaaaatctgaaattaaacca
aaattaagaattaaaacacaattccacagcaaaagctacctagtgagccc
ctattatcaagttaataataacaatataaaaataatagcaataaacatta
ctattcttaacaaaaagaattaaaacacatatagacacatagatatatgc
atttgagcatacacccacccataaccacacaccaaagtttggggcaaaga
ctaagcagccacatgcatggaagatatgaatttcatacttaagccaaaaa
tgttactaagcaaggaaaatggaaatcaaacaaaataaataaatgattta
atactatttccatcaagcaatggaagtaggtcccctccgagggccccaaa
cctattttctacaggtatttagtttacattgactcataatgacttcacat
tgcacccttacaccagtgcatctctcagctcttatcagagatgcttctct
taggagcagatgctgattgacagagagctataactgctaagcaggcaggg
gataatagactgtggagttctcagtcctgagtgtgacatctattcaaaca
cttttctctcaaggctcaggaatcactgtggaaaagggaatagaaatttt
gcaacagccaaaggcaagagacggctacatgacagtgttttttttttttt
tttttaggataaaagtggggatatttaaaatatgaacgcatagtgattgt
agcagcacaagcagacttgaatgagctcacagatgttaacttcagcagta
gaaagtggaggtggctatgatgttctttaccccgtgttggaaattcaatt
caggcatttggagaagctctggaacaggaaccttgttttccaggaatgca
agtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96633620_96634794
seq2: B6Ng01-326L04.b_45_1205

seq1  GAATTCTCTACAGTTGATTTCTTCAAGAAAGCAAGATATTTTTGTAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAGTTGATTTCTTCAAGAAAGCAAGATATTTTTGTAAATG  50

seq1  TAGGTAAATCCCTTTCCAATTTCTCTCCAAAATTAAGCAGTTCCAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAATCCCTTTCCAATTTCTCTCCAAAATTAAGCAGTTCCAGTTCT  100

seq1  AGCGTTGTTGTTTGTTTGCTTGTTTGTTTGTTTGCTTCCATTCTGGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGTTGTTTGTTTGCTTGTTTGTTTGTTTGCTTCCATTCTGGTTCC  150

seq1  ATTAGCTGAATGTCTACTGCAAATATTAGCCATATCTTAACTTCTGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGAATGTCTACTGCAAATATTAGCCATATCTTAACTTCTGGTTG  200

seq1  AGTATTCTAATTAGAATTTATATATATATATATATATATATATATATATA  250
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AGTATTCTAATTAGAATT--TATATATATATATATATATATATATATATA  248

seq1  TATATATATATATGTACTTAATCCTATAAATTACTATGATGGTGGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATGTACTTAATCCTATAAATTACTATGATGGTGGTAATT  298

seq1  CTTTAGTCACCTAGTTCACAAATAACTTTTAATATTTCAAAGCTTAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCACCTAGTTCACAAATAACTTTTAATATTTCAAAGCTTAGGCC  348

seq1  TTGTCTGGGCAGACTCTGAACTAGCTCATCTAAGTTAATGCAAACACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGGGCAGACTCTGAACTAGCTCATCTAAGTTAATGCAAACACTTA  398

seq1  GCCCTGCCCAGCCACTGTGGCTAGCTATACCTTCCAGTTGTGCAGTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCCAGCCACTGTGGCTAGCTATACCTTCCAGTTGTGCAGTCACA  448

seq1  TCAGTCTACTCTCATATCTCCTAGTGAATGGCACTTATTCCTTCTTCGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTACTCTCATATCTCCTAGTGAATGGCACTTATTCCTTCTTCGCA  498

seq1  GAGTTATTTTCTCCCTTCCAGAAAGGCCTGCTTTCTACTTTCTGCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTTTCTCCCTTCCAGAAAGGCCTGCTTTCTACTTTCTGCTCAGC  548

seq1  TAATTTGCCATCGTATTTTTATTAAAACTAATTGAAGAGTGCCTTAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCCATCGTATTTTTATTAAAACTAATTGAAGAGTGCCTTAGGAA  598

seq1  GGTGAGGAAGGACAGAGATATAAGGTCACATAGTGTACTTCAACATTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAAGGACAGAGATATAAGGTCACATAGTGTACTTCAACATTTAT  648

seq1  ACTTTCAAAGTGATAAATACACCAGATTTCTTTTTACTCCTTCATTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAAGTGATAAATACACCAGATTTCTTTTTACTCCTTCATTAGAC  698

seq1  TGACTTGAGTAATTATCCTTATTTGCTGATTCTACAATCTCCTATAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAGTAATTATCCTTATTTGCTGATTCTACAATCTCCTATAACTA  748

seq1  TTTCTGAGCCCCCATAATTCTAAGGAATTCTTCAAGGAAAATTTTCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCCCCCATAATTCTAAGGAATTCTTCAAGGAAAATTTTCATAA  798

seq1  TCCTAGAGGAGTAACTGCTGCCTTCTCTGTCAATTGTCTTTGCTCTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGGAGTAACTGCTGCCTTCTCTGTCAATTGTCTTTGCTCTGGTT  848

seq1  AGCCTTTTTGGTTTTTGTTTGTTGCAATTATGTTCCTGAACATATGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTTGGTTTTTGTTTGTTGCAATTATGTTCCTGAACATATGCAAG  898

seq1  ACTGTCTTCTCATTAATTAGGTTCTCAACTAAAGAAACCTTATATCAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTCTCATTAATTAGGTTCTCAACTAAAGAAACCTTATATCAATA  948

seq1  -TTTCTTGGTCAATATACATGCACAAATACCCAATATAAACCT-ACAACA  998
       ||||||||||||||||||||||||||||||| |||||||||| ||||| 
seq2  TTTTCTTGGTCAATATACATGCACAAATACCC-ATATAAACCTAACAAC-  996

seq1  ATTATCATCTATAGATGTGAGAACAATTGGAAGACTCTGTTGATTTTAAT  1048
      |||||||||||||||||||||||||||||||   ||||| ||||||  ||
seq2  ATTATCATCTATAGATGTGAGAACAATTGGAGACCTCTG-TGATTT--AT  1043

seq1  GATATTACTTAGATGTTTGGAGTCCAATGACTGTCAGATGATATAGA-CT  1097
      ||   ||| ||||||||||||||||||||||||||||||||  |||| ||
seq2  GAATATACCTAGATGTTTGGAGTCCAATGACTGTCAGATGAATTAGACCT  1093

seq1  TGCTTTGGACGGAGAAACTAAAACACTCCAGCATATAACCCCTGGCCCTA  1147
      ||||||| ||   |||||||||||||| |||||||||  |||||  ||||
seq2  TGCTTTGAAC---GAAACTAAAACACT-CAGCATATA--CCCTG--CCTA  1135

seq1  TCATCCTCCAACATACAAAGAATAGTCT  1175
      ||||||||| |||||| |||||||||||
seq2  TCATCCTCC-ACATAC-AAGAATAGTCT  1161


seq1: chr2_96768351_96769501
seq2: B6Ng01-326L04.g_66_1221 (reverse)

seq1  CACAC-TGCATT-CTTGAAAACAGAGTTCCTGTTCCAGAAGCTCTC--AA  46
      ||||| |||||| || |||||||  ||||||||||||||   ||||  ||
seq2  CACACTTGCATTCCTGGAAAACAAGGTTCCTGTTCCAGAGCTTCTCCAAA  50

seq1  TTGCTG-ATTGAATTT-CAACACGGGTTAA--GACATCATAACCACCTCC  92
      |  ||| ||||||||| ||||||||| |||   |||||||| ||||||||
seq2  TGCCTGAATTGAATTTCCAACACGGGGTAAAGAACATCATAGCCACCTCC  100

seq1  AC-TTCTACTGCTGGAAGTTTACATCTTGGTTGAGCTCATTCAAGTCTTG  141
      || |||||||||| |||||| ||||||    |||||||||||||||| ||
seq2  ACTTTCTACTGCT-GAAGTTAACATCT---GTGAGCTCATTCAAGTC-TG  145

seq1  CTTGTGCTGCTACAATCACTATGCGTTCATATTTTAAATAT-CCCACTTT  190
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTGTGCTGCTACAATCACTATGCGTTCATATTTTAAATATCCCCACTTT  195

seq1  TATCCT-AAAAAAAAAAAAAAAAACACTGTCATTGTAGCCGTCTCTTGCC  239
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TATCCTAAAAAAAAAAAAAAAAAACACTGTCA-TGTAGCCGTCTCTTGCC  244

seq1  TTTGGCTGTTGCAAAATTTCTATTCCCTTTTCCACAGTGATTCCTGAGCC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGTTGCAAAATTTCTATTCCCTTTTCCACAGTGATTCCTGAGCC  294

seq1  TTGAGAGAAAAGTGTTTGAATAGATGTCACACTCAGGACTGAGAACTCCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAAAAGTGTTTGAATAGATGTCACACTCAGGACTGAGAACTCCA  344

seq1  CAGTCTATTATCCCCTGCCTGCTTAGCAGTTATAGCTCTCTGTCAATCAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATTATCCCCTGCCTGCTTAGCAGTTATAGCTCTCTGTCAATCAG  394

seq1  CATCTGCTCCTAAGAGAAGCATCTCTGATAAGAGCTGAGAGATGCACTGG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCCTAAGAGAAGCATCTCTGATAAGAGCTGAGAGATGCACTGG  444

seq1  TGTAAGGGTGCAATGTGAAGTCATTATGAGTCAATGTAAACTAAATACCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGTGCAATGTGAAGTCATTATGAGTCAATGTAAACTAAATACCT  494

seq1  GTAGAAAATAGGTTTGGGGCCCTCGGAGGGGACCTACTTCCATTGCTTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATAGGTTTGGGGCCCTCGGAGGGGACCTACTTCCATTGCTTGA  544

seq1  TGGAAATAGTATTAAATCATTTATTTATTTTGTTTGATTTCCATTTTCCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAGTATTAAATCATTTATTTATTTTGTTTGATTTCCATTTTCCT  594

seq1  TGCTTAGTAACATTTTTGGCTTAAGTATGAAATTCATATCTTCCATGCAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTAACATTTTTGGCTTAAGTATGAAATTCATATCTTCCATGCAT  644

seq1  GTGGCTGCTTAGTCTTTGCCCCAAACTTTGGTGTGTGGTTATGGGTGGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCTTAGTCTTTGCCCCAAACTTTGGTGTGTGGTTATGGGTGGGT  694

seq1  GTATGCTCAAATGCATATATCTATGTGTCTATATGTGTTTTAATTCTTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCAAATGCATATATCTATGTGTCTATATGTGTTTTAATTCTTTT  744

seq1  TGTTAAGAATAGTAATGTTTATTGCTATTATTTTTATATTGTTATTATTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAATAGTAATGTTTATTGCTATTATTTTTATATTGTTATTATTA  794

seq1  ACTTGATAATAGGGGCTCACTAGGTAGCTTTTGCTGTGGAATTGTGTTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATAATAGGGGCTCACTAGGTAGCTTTTGCTGTGGAATTGTGTTTT  844

seq1  AATTCTTAATTTTGGTTTAATTTCAGATTTTTAGGATTTCCTAAAATAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAATTTTGGTTTAATTTCAGATTTTTAGGATTTCCTAAAATAGG  894

seq1  TTAGTTTATTAATTTTCAGGCCTGTCACCATTTTAGAGTAGTAAGCTTCC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTATTAATTTTCAGGCCTGTCACCATTTTAGAGTAGTAAGCTTCC  944

seq1  ATTTCTTTAAAGATGTACCAAATTGGATAGGACACACATAACTTTAAGCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAAAGATGTACCAAATTGGATAGGACACACATAACTTTAAGCC  994

seq1  AACTTTCATGTTTTCTCTGAAATTTATTTTCTGTTGTGTGTATTTTCAAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCATGTTTTCTCTGAAATTTATTTTCTGTTGTGTGTATTTTCAAC  1044

seq1  TATGAAGCCTTAGAATTAGTAAAATATCTGTGAATACTTTGTAGAATCTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCCTTAGAATTAGTAAAATATCTGTGAATACTTTGTAGAATCTT  1094

seq1  ACATTTTATCTATATGTATATTAAGAATCAATCAAAAATTTGATTTACAC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATCTATATGTATATTAAGAATCAATCAAAAATTTGATTTACAC  1144

seq1  ATTAGTGAATTC  1151
      ||||||||||||
seq2  ATTAGTGAATTC  1156


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