BAC Information

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BAC

Clone NameB6Ng01-326M10
Chromosome2 (Build37)
Map Location 72,060,683 - 72,236,333
singlet/doubletdoublet
Overlap geneRapgef4, B230120H23Rik
Upstream geneDync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, LOC100040270
Downstream geneCdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326M10.bB6Ng01-326M10.g
ACCGA114503GA114504
length1,1901,058
definitionB6Ng01-326M10.b B6Ng01-326M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,235,153 - 72,236,333)(72,060,683 - 72,061,730)
sequence
gaattcagtgagtctccactactgcccggcccgtgggtgctcagtggatc
cattggaggactaaccagatacaaagctaaggtgtgggctttgaaattgg
ccaggaaccggccagagcagcgggactctttcttatccttcaaaaccaac
aggtggttcctagttgggaaaaaccaactcagagcattttaacaaagcac
tgaagagcgacctagcgaccatttttctcccaaaacagccccaagaaatg
ggtactggtctgtactgtggatgggaaaatgacaccaggttgtatataca
cagggtgaactacggggctgacactcttgcccactgagtggctcagtgag
gctccttaacctgggatttctttggctgaagggatgtcagtttaagatgc
cagggctctacaatgtgcttcatcctgagaatccctgggcctgcttactg
aaaacaataaaacacaaatggccaaggataccatggagaaagaacactag
tggccggctgggtgaggcctgcctgcttccactatttaacaaacacagac
aacttttttctccacttttcttttactgaaaatagataatttttcataca
atatattctgattatggtttctcctctccctaactcctcggagatttttc
cacctcaaccaagttcacatcctctttgtctcctcaaaaaataaacaggc
acctaaagaatggttgtaaaataaaatacgataaaacaaaaacaagcaaa
ctggaataaggcaaaccaaacaaacaggaggaaaaaaaaaaagccaaaga
aaaagtgcaagaaacacataaaggtgtacacacacacacacacacacaca
cacacacacgaatcccatacaaataatttttataatctagcaagcatgga
atacttgtccagagagattctgagtctcttttcaactctagacttttaaa
ggcagttctttccctcctgtctaggacactctgcccggtaacagaaactg
ttccttacagacacggaaactggcaccgatgtctgggcacaaacttttcc
tccttcaggcctgtcacaatgtaatgtctaaattatgcctctgagaaact
gaagttctctccgccttgagtctggaagagtttgccacaatgagcctata
gagcccatgtaatgagagagatgaaaggccgtggggtgtc
gaattcatgcaaagaaggatcataatgataggggcagaattaaggggacc
aacaggaggaggcaaaatacccagaagtaagcaatgggaaatcacattac
tgtcctggagggtggggtataggacaggaagggagaatgagaaccgaggc
tagaccctgcaggaatcctggtcatgtctgtggagcctgcagtctaactc
ttcagtcagctatcaggagtcaccaacagtgtgtgcgtgtgtgcttcaga
cactgtgatgggaagtttccttgaggaccaacgtgggagatggcataagt
ccaaagctgggatctgtcattctctgccttgcacgtagcacaagcgaaac
gggtgggaagtagctctgtggtttccttgactccttggcacttaccacgc
acagccttctcaaggtaccgagcaggagagaatggattatgccctcaaca
acaagaggcgggtcatccgcttggtcctgcagtgggcggccatgtatggc
gatctcctccaagaagatgatgtggccatggccttcctggaggtatgtgg
gggtcattcatatccttttgtccactgacacagggtgtacagccaattct
atagagactctgcaattgccagttctagaccttgttagcatgttcactgt
caggtatgtttaataaaagaaaaacatcagcccttgtcctcccgctccag
tgctccagctccatgagtggtgccaccatggtgcgttatggtctgctctt
gtgttctttgcatgtttgagagacttgtaatcgcatgagtacccagcatt
ttgcaggctgctttttttttttctacttcgctctgtaaagattttttttc
cccatgtcagtgagttcttttgtaatgaaaaggttccgacactccatcag
cagctgtccacaaaagcattttatcctgtgcccacacgtgtctgctttct
ccttgctaggatactgtacagcaaaacacttttgtgcatgcgggtctgtc
ttcagttacctccacttccttaggagtaaagcccaagggaagaatggtgg
gggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_72235153_72236333
seq2: B6Ng01-326M10.b_52_1240 (reverse)

seq1  ACACCCCACGCCCTTTCA--TCTCTCATTACAT-GGCTC-ATA-GCTCA-  44
      |||||||||| |||||||  ||||||||||||| ||||| ||| ||||| 
seq2  ACACCCCACGGCCTTTCATCTCTCTCATTACATGGGCTCTATAGGCTCAT  50

seq1  TGT-GCAAACTCTTCAGAAACTCAAGGCG--GAGAACTTCCAGTTCTCAG  91
      ||| |||||||||||  | ||||||||||  |||||||||   |||||||
seq2  TGTGGCAAACTCTTC-CAGACTCAAGGCGGAGAGAACTTCAGTTTCTCAG  99

seq1  A-GCATAAATTTAGACATTAACATTGTGACAGCCCTGAAGGAGGAAAAGT  140
      | |||| |||||||||||| |||||||||||| |||||||||||||||||
seq2  AGGCAT-AATTTAGACATT-ACATTGTGACAGGCCTGAAGGAGGAAAAGT  147

seq1  TTGTGCCCAGACATC-GTGCCAGTTTCCGTGTCTGTAAGGAACAGTTTCT  189
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCAGACATCGGTGCCAGTTTCCGTGTCTGTAAGGAACAGTTTCT  197

seq1  GTTACCGGGCAGAGTGTCCTAGACAGGAGGGAAAGAACTGCCTTTAAAAG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCGGGCAGAGTGTCCTAGACAGGAGGGAAAGAACTGCCTTTAAAAG  247

seq1  TCTAGAGTTGAAAAGAGACTCAGAATCTCTCTGGACAAGTATTCCATGCT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTTGAAAAGAGACTCAGAATCTCTCTGGACAAGTATTCCATGCT  297

seq1  TGCTAGATTATAAAAATTATTTGTATGGGATTCGTGTGTGTGTGTGTGTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGATTATAAAAATTATTTGTATGGGATTCGTGTGTGTGTGTGTGTG  347

seq1  TGTGTGTGTGTGTGTACACCTTTATGTGTTTCTTGCACTTTTTCTTTGGC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTACACCTTTATGTGTTTCTTGCACTTTTTCTTTGGC  397

seq1  TTTTTTTTTTTCCTCCTGTTTGTTTGGTTTGCCTTATTCCAGTTTGCTTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCCTCCTGTTTGTTTGGTTTGCCTTATTCCAGTTTGCTTG  447

seq1  TTTTTGTTTTATCGTATTTTATTTTACAACCATTCTTTAGGTGCCTGTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTATCGTATTTTATTTTACAACCATTCTTTAGGTGCCTGTTT  497

seq1  ATTTTTTGAGGAGACAAAGAGGATGTGAACTTGGTTGAGGTGGAAAAATC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGGAGACAAAGAGGATGTGAACTTGGTTGAGGTGGAAAAATC  547

seq1  TCCGAGGAGTTAGGGAGAGGAGAAACCATAATCAGAATATATTGTATGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGAGTTAGGGAGAGGAGAAACCATAATCAGAATATATTGTATGAA  597

seq1  AAATTATCTATTTTCAGTAAAAGAAAAGTGGAGAAAAAAGTTGTCTGTGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTATTTTCAGTAAAAGAAAAGTGGAGAAAAAAGTTGTCTGTGT  647

seq1  TTGTTAAATAGTGGAAGCAGGCAGGCCTCACCCAGCCGGCCACTAGTGTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATAGTGGAAGCAGGCAGGCCTCACCCAGCCGGCCACTAGTGTT  697

seq1  CTTTCTCCATGGTATCCTTGGCCATTTGTGTTTTATTGTTTTCAGTAAGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATGGTATCCTTGGCCATTTGTGTTTTATTGTTTTCAGTAAGC  747

seq1  AGGCCCAGGGATTCTCAGGATGAAGCACATTGTAGAGCCCTGGCATCTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGGGATTCTCAGGATGAAGCACATTGTAGAGCCCTGGCATCTTA  797

seq1  AACTGACATCCCTTCAGCCAAAGAAATCCCAGGTTAAGGAGCCTCACTGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACATCCCTTCAGCCAAAGAAATCCCAGGTTAAGGAGCCTCACTGA  847

seq1  GCCACTCAGTGGGCAAGAGTGTCAGCCCCGTAGTTCACCCTGTGTATATA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAGTGGGCAAGAGTGTCAGCCCCGTAGTTCACCCTGTGTATATA  897

seq1  CAACCTGGTGTCATTTTCCCATCCACAGTACAGACCAGTACCCATTTCTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGTGTCATTTTCCCATCCACAGTACAGACCAGTACCCATTTCTT  947

seq1  GGGGCTGTTTTGGGAGAAAAATGGTCGCTAGGTCGCTCTTCAGTGCTTTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGTTTTGGGAGAAAAATGGTCGCTAGGTCGCTCTTCAGTGCTTTG  997

seq1  TTAAAATGCTCTGAGTTGGTTTTTCCCAACTAGGAACCACCTGTTGGTTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGCTCTGAGTTGGTTTTTCCCAACTAGGAACCACCTGTTGGTTT  1047

seq1  TGAAGGATAAGAAAGAGTCCCGCTGCTCTGGCCGGTTCCTGGCCAATTTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATAAGAAAGAGTCCCGCTGCTCTGGCCGGTTCCTGGCCAATTTC  1097

seq1  AAAGCCCACACCTTAGCTTTGTATCTGGTTAGTCCTCCAATGGATCCACT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACACCTTAGCTTTGTATCTGGTTAGTCCTCCAATGGATCCACT  1147

seq1  GAGCACCCACGGGCCGGGCAGTAGTGGAGACTCACTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCACGGGCCGGGCAGTAGTGGAGACTCACTGAATTC  1189

seq1: chr2_72060683_72061730
seq2: B6Ng01-326M10.g_67_1124

seq1  GAATTCATGCAAAGAAGGATCATAATGATAGGGGCAGAATTAAGGGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAAAGAAGGATCATAATGATAGGGGCAGAATTAAGGGGACC  50

seq1  AACAGGAGGAGGCAAAATACCCAGAAGTAAGCAATGGGAAATCACATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGGAGGCAAAATACCCAGAAGTAAGCAATGGGAAATCACATTAC  100

seq1  TGTCCTGGAGGGTGGGGTATAGGACAGGAAGGGAGAATGAGAACCGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAGGGTGGGGTATAGGACAGGAAGGGAGAATGAGAACCGAGGC  150

seq1  TAGACCCTGCAGGAATCCTGGTCATGTCTGTGGAGCCTGCAGTCTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCTGCAGGAATCCTGGTCATGTCTGTGGAGCCTGCAGTCTAACTC  200

seq1  TTCAGTCAGCTATCAGGAGTCACCAACAGTGTGTGCGTGTGTGCTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCAGCTATCAGGAGTCACCAACAGTGTGTGCGTGTGTGCTTCAGA  250

seq1  CACTGTGATGGGAAGTTTCCTTGAGGACCAACGTGGGAGATGGCATAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGATGGGAAGTTTCCTTGAGGACCAACGTGGGAGATGGCATAAGT  300

seq1  CCAAAGCTGGGATCTGTCATTCTCTGCCTTGCACGTAGCACAAGCGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGGGATCTGTCATTCTCTGCCTTGCACGTAGCACAAGCGAAAC  350

seq1  GGGTGGGAAGTAGCTCTGTGGTTTCCTTGACTCCTTGGCACTTACCACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAAGTAGCTCTGTGGTTTCCTTGACTCCTTGGCACTTACCACGC  400

seq1  ACAGCCTTCTCAAGGTACCGAGCAGGAGAGAATGGATTATGCCCTCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTCTCAAGGTACCGAGCAGGAGAGAATGGATTATGCCCTCAACA  450

seq1  ACAAGAGGCGGGTCATCCGCTTGGTCCTGCAGTGGGCGGCCATGTATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGCGGGTCATCCGCTTGGTCCTGCAGTGGGCGGCCATGTATGGC  500

seq1  GATCTCCTCCAAGAAGATGATGTGGCCATGGCCTTCCTGGAGGTATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTCCAAGAAGATGATGTGGCCATGGCCTTCCTGGAGGTATGTGG  550

seq1  GGGTCATTCATATCCTTTTGTCCACTGACACAGGGTGTACAGCCAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTCATATCCTTTTGTCCACTGACACAGGGTGTACAGCCAATTCT  600

seq1  ATAGAGACTCTGCAATTGCCAGTTCTAGACCTTGTTAGCATGTTCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACTCTGCAATTGCCAGTTCTAGACCTTGTTAGCATGTTCACTGT  650

seq1  CAGGTATGTTTAATAAAAGAAAAACATCAGCCCTTGTCCTCCCGCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGTTTAATAAAAGAAAAACATCAGCCCTTGTCCTCCCGCTCCAG  700

seq1  TGCTCCAGCTCCATGAGTGGTGCCACCATGGTGCGTTATGGTCTGCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGCTCCATGAGTGGTGCCACCATGGTGCGTTATGGTCTGCTCTT  750

seq1  GTGTTCTTTGCATGTTTGAGAGACTTGTAATCGCATGAGTACCCAGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTTGCATGTTTGAGAGACTTGTAATCGCATGAGTACCCAGCATT  800

seq1  TTGCAGGCTGC-TTTTTTTTTTCTACTTCGCTCTGTAAAGA-TTTTTTTC  848
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TTGCAGGCTGCTTTTTTTTTTTCTACTTCGCTCTGTAAAGATTTTTTTTC  850

seq1  CCCATGTCAGTGAGTTC-TTTGTAATG-AAAGGTTCCGACACTCCATCAG  896
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CCCATGTCAGTGAGTTCTTTTGTAATGAAAAGGTTCCGACACTCCATCAG  900

seq1  CAGCTGTCCACAAAAGCA-TTTAT-CTGTGCCCACACGTGTCTGCTTTCT  944
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  CAGCTGTCCACAAAAGCATTTTATCCTGTGCCCACACGTGTCTGCTTTCT  950

seq1  CCTTGCTAGGATAACTGTACAGC-AAACACTTTTGTGCATGCGGGTCTGT  993
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  CCTTGCTAGGAT-ACTGTACAGCAAAACACTTTTGTGCATGCGGGTCTGT  999

seq1  CTTCAGTTAC--TCACTTTCTTAGGAGTAAAAGCCCAAGGG-AGAATGGT  1040
      ||||||||||   ||||| ||||||||| |||||||||||| ||||||||
seq2  CTTCAGTTACCTCCACTTCCTTAGGAGT-AAAGCCCAAGGGAAGAATGGT  1048

seq1  --GGGTGGGG  1048
        ||||||||
seq2  GGGGGTGGGG  1058