BAC Information

Click to search

BAC

Clone NameB6Ng01-327E16
Chromosome2 (Build37)
Map Location 139,494,906 - 139,496,058
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628103, C130053K05Rik
Downstream geneLOC100043792, 5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327E16.b
ACCGA114881
length1,133
definitionB6Ng01-327E16.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtctttgtctctgtctctgttttctctttttctgtctgtctct
ctgtgtctctgcctctctgaatctctgtctctctgtctttgtccctatct
gtctctctgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtct
gtctctctctctctctctctctctctctggtttatgtggtggctctccca
tgtgaataatccatgcttagattaatcaggaacttagcctcctttgcagc
tctgttactaagcaaacacagcccatctccagaaatagagccactgtatc
tgatcagaaacacagaaggaagcccagccagctcctaagaccacccagat
gagcctagtctaaatagacaacaagctaaataaataattgttatactgga
tagtttagcatagaacttttcatcgagctttgcttcagatactccagtat
gtgcctcctaagaacaaggagactccacaccaccacaatacagttctcat
cctcaagacattttgcttcagtaccttaccatttaatttaaaatacaaac
ttacactccagtagttcatacagcacctgtcaggtttcatttccacttag
aagctgtgggagaagtgttgatcacattatactgtcctgcttctgtttct
gtacagctttcgtctccatcacttcttactccccgctccccacttcttgt
gtcattactgttaagtctgggcagttgaagttgcagcatgacccttaatt
tttaaatttgcctggttgcttctcctggaccaatttcatatatcatactt
taagggaggaattctagccagttaattctgtgttcttctgaagacatcat
gtgggttctgtggtgttaatttgaccagttgttggggaatatgactccag
atacagggaaatcagagttactttttttttttctctgatccagggtcaac
tttaatttcttgagtctaaatttttaagggggaatcccatttcccccaga
gttacttctttatggggtaatcggttagggtgctgatgagatatgatgag
aatatgactttgagtgtgaaagagagcagcatgcaattaatctacttttc
ggatgactcattctcagagttgtcatccttgtc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_139494906_139496058
seq2: B6Ng01-327E16.b_43_1175 (reverse)

seq1  GACAAGGATGACAAACATCTTGGAAGAAAATGAAGTACATTCCCAGAAAA  50
      ||||||||||||||   |||     || |||| ||| |||   | |||||
seq2  GACAAGGATGACAA--CTCT-----GAGAATG-AGT-CAT---CCGAAAA  38

seq1  GTAGA-TAAATGCATGCTTCCTCTCTTTCCACACTCAAAAAGTCATATTC  99
      ||||| ||| ||||||| | |||||||| |||||||  ||||||||||||
seq2  GTAGATTAATTGCATGC-TGCTCTCTTT-CACACTC--AAAGTCATATTC  84

seq1  TTCATCATATTCTTCATCAGCAACCCTAACCGATTTAACCCCATAAAAGA  149
       |||||||||   |||||||| |||||||||||||  ||||||| |||||
seq2  -TCATCATAT--CTCATCAGC-ACCCTAACCGATT--ACCCCAT-AAAGA  127

seq1  AGTAACTCTGGGGG-AATGGGTTTCCCCCCTTTAAAAATTTAGACTCAAG  198
      |||||||||||||| |||||| |||||||  |||||||||||||||||||
seq2  AGTAACTCTGGGGGAAATGGGATTCCCCC--TTAAAAATTTAGACTCAAG  175

seq1  -AATTAAAGTTGACCCTGGATCAGAG-AAAAAAAAAAGTAACTCTGA-TT  245
       ||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  AAATTAAAGTTGACCCTGGATCAGAGAAAAAAAAAAAGTAACTCTGATTT  225

seq1  CCCTGTATCTGGAGTCATATTCCCCAACAACTGGTCAAATTAACACCACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATCTGGAGTCATATTCCCCAACAACTGGTCAAATTAACACCACA  275

seq1  GAACCCACATGATGTCTTCAGAAGAACACAGAATTAACTGGCTAGAATTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACATGATGTCTTCAGAAGAACACAGAATTAACTGGCTAGAATTC  325

seq1  CTCCCTTAAAGTATGATATATGAAATTGGTCCAGGAGAAGCAACCAGGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTAAAGTATGATATATGAAATTGGTCCAGGAGAAGCAACCAGGCA  375

seq1  AATTTAAAAATTAAGGGTCATGCTGCAACTTCAACTGCCCAGACTTAACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAATTAAGGGTCATGCTGCAACTTCAACTGCCCAGACTTAACA  425

seq1  GTAATGACACAAGAAGTGGGGAGCGGGGAGTAAGAAGTGATGGAGACGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGACACAAGAAGTGGGGAGCGGGGAGTAAGAAGTGATGGAGACGAA  475

seq1  AGCTGTACAGAAACAGAAGCAGGACAGTATAATGTGATCAACACTTCTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTACAGAAACAGAAGCAGGACAGTATAATGTGATCAACACTTCTCC  525

seq1  CACAGCTTCTAAGTGGAAATGAAACCTGACAGGTGCTGTATGAACTACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTCTAAGTGGAAATGAAACCTGACAGGTGCTGTATGAACTACTG  575

seq1  GAGTGTAAGTTTGTATTTTAAATTAAATGGTAAGGTACTGAAGCAAAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAGTTTGTATTTTAAATTAAATGGTAAGGTACTGAAGCAAAATG  625

seq1  TCTTGAGGATGAGAACTGTATTGTGGTGGTGTGGAGTCTCCTTGTTCTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGATGAGAACTGTATTGTGGTGGTGTGGAGTCTCCTTGTTCTTA  675

seq1  GGAGGCACATACTGGAGTATCTGAAGCAAAGCTCGATGAAAAGTTCTATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACATACTGGAGTATCTGAAGCAAAGCTCGATGAAAAGTTCTATG  725

seq1  CTAAACTATCCAGTATAACAATTATTTATTTAGCTTGTTGTCTATTTAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTATCCAGTATAACAATTATTTATTTAGCTTGTTGTCTATTTAGA  775

seq1  CTAGGCTCATCTGGGTGGTCTTAGGAGCTGGCTGGGCTTCCTTCTGTGTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCATCTGGGTGGTCTTAGGAGCTGGCTGGGCTTCCTTCTGTGTT  825

seq1  TCTGATCAGATACAGTGGCTCTATTTCTGGAGATGGGCTGTGTTTGCTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCAGATACAGTGGCTCTATTTCTGGAGATGGGCTGTGTTTGCTTA  875

seq1  GTAACAGAGCTGCAAAGGAGGCTAAGTTCCTGATTAATCTAAGCATGGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGAGCTGCAAAGGAGGCTAAGTTCCTGATTAATCTAAGCATGGAT  925

seq1  TATTCACATGGGAGAGCCACCACATAAACCAGAGAGAGAGAGAGAGAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACATGGGAGAGCCACCACATAAACCAGAGAGAGAGAGAGAGAGAG  975

seq1  AGAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAC  1025

seq1  AGAGAGACAGATAGGGACAAAGACAGAGAGACAGAGATTCAGAGAGGCAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGATAGGGACAAAGACAGAGAGACAGAGATTCAGAGAGGCAG  1075

seq1  AGACACAGAGAGACAGACAGAAAAAGAGAAAACAGAGACAGAGACAAAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAGAGACAGACAGAAAAAGAGAAAACAGAGACAGAGACAAAGA  1125

seq1  CAGAATTC  1153
      ||||||||
seq2  CAGAATTC  1133


| Home | SequenceCutter | Blast | Download |