BAC Information

Click to search

BAC

Clone NameB6Ng01-327J16
Chromosome2 (Build37)
Map Location 162,363,491 - 162,509,442
singlet/doubletdoublet
Overlap genePtprt, LOC100043895, LOC100043896
Upstream genenone
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327J16.bB6Ng01-327J16.g
ACCGA115107GA115108
length1,127433
definitionB6Ng01-327J16.b B6Ng01-327J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,363,491 - 162,364,611)(162,509,004 - 162,509,442)
sequence
gaattctagtttctagactctccctagaattgagattcggtgtgaagttg
cagaagattgaacaatggcggtgcctggtatctgaaatggatgaaaaggt
ccaagaagcagagagcaaggagtcacaaaggctcatcagctcacctgtca
gtaattgcctcaaaccgtcccccatctggggaacaatcttgtcccacatt
tactctgagagggagccaactccccctgccacatgccaccctggtttcac
cccagtgtgctctgagcctgaggacggatcaattcaaagtcatgacctct
ctctttcggtagaaatatcccagtgctattattctcttgggagagctaca
aagtggaccagctcctaaagacatacaggaggcgccaaagaaaagaggct
gagctgattacctgagaggtgctgctgaaggacagcccctctacctaaca
ggaagtcctgtaagttcccaggcactcaccatgaccctggatccagataa
aagcagtggactcatgcaaaggtcagaagtctcagggaatactgccagtt
cagaatcccagctgcacggctctggaaataaactttgctaatagcacagt
ggttctatttaatgatttgtctatttttacatttagccacaaacatcatt
tcttcaatagtggactgctacctactcacactcatcctgtcctatttcta
ctaactcatctactggacacacggtaggctgttcctcagaatcccagata
tgtaagaagatggtacaatgtcacagctaatggaaacctctgactctctt
ccaccctctttttccctaatcaccatttgaattccacggatgagaagaat
ggcagaatcacaagatggaaaagctttagcacagctccaacccacactgg
atatgatgaaaggaaaccaatctccactatgggtgataacaaaatcttgc
agtcatttgtacagagttaacctgttggtggctatgggggatgggccaga
atggagagctggagttagatctcaggaccacggtagatccagggcatatg
atggtgcatgctttcattccccggcacctgaaggaggccaagcacagaac
agggtctggaaggcaccatgaatgcca
tcatccacaatgtggctggaccctcccacatcaatcactaacaaaatgtc
ctataggcttgcctatagcctgatcttatggagacattttctcaattggg
gtttcttcctctaagagcactctggcctgtgtcaagttgacataaagact
agctggcacatcctccctccccacctcagattgctgttattttcatttcc
actccagcacgatcacatacaacctggaatagttcatgtatgcatttttc
tttctgtccacaacaccataaagtccttggaaaacaggctgtatcttact
ccctgcttgaatccccagagtcctttacaggtccaggcttacacgcagct
gtctgaggtcttcctgagaaacacaacatggaatgggcatacgtctgtaa
gtggaaagtacacccaggtgggggtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162363491_162364611
seq2: B6Ng01-327J16.b_45_1171

seq1  GAATTCTAGTTTCTAGACTCTCCCTAGAATTGAGATTCGGTGTGAAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTTCTAGACTCTCCCTAGAATTGAGATTCGGTGTGAAGTTG  50

seq1  CAGAAGATTGAACAATGGCGGTGCCTGGTATCTGAAATGGATGAAAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATTGAACAATGGCGGTGCCTGGTATCTGAAATGGATGAAAAGGT  100

seq1  CCAAGAAGCAGAGAGCAAGGAGTCACAAAGGCTCATCAGCTCACCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCAGAGAGCAAGGAGTCACAAAGGCTCATCAGCTCACCTGTCA  150

seq1  GTAATTGCCTCAAACCGTCCCCCATCTGGGGAACAATCTTGTCCCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGCCTCAAACCGTCCCCCATCTGGGGAACAATCTTGTCCCACATT  200

seq1  TACTCTGAGAGGGAGCCAACTCCCCCTGCCACATGCCACCCTGGTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAGAGGGAGCCAACTCCCCCTGCCACATGCCACCCTGGTTTCAC  250

seq1  CCCAGTGTGCTCTGAGCCTGAGGACGGATCAATTCAAAGTCATGACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGCTCTGAGCCTGAGGACGGATCAATTCAAAGTCATGACCTCT  300

seq1  CTCTTTCGGTAGAAATATCCCAGTGCTATTATTCTCTTGGGAGAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCGGTAGAAATATCCCAGTGCTATTATTCTCTTGGGAGAGCTACA  350

seq1  AAGTGGACCAGCTCCTAAAGACATACAGGAGGCGCCAAAGAAAAGAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGACCAGCTCCTAAAGACATACAGGAGGCGCCAAAGAAAAGAGGCT  400

seq1  GAGCTGATTACCTGAGAGGTGCTGCTGAAGGACAGCCCCTCTACCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATTACCTGAGAGGTGCTGCTGAAGGACAGCCCCTCTACCTAACA  450

seq1  GGAAGTCCTGTAAGTTCCCAGGCACTCACCATGACCCTGGATCCAGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCTGTAAGTTCCCAGGCACTCACCATGACCCTGGATCCAGATAA  500

seq1  AAGCAGTGGACTCATGCAAAGGTCAGAAGTCTCAGGGAATACTGCCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGGACTCATGCAAAGGTCAGAAGTCTCAGGGAATACTGCCAGTT  550

seq1  CAGAATCCCAGCTGCACGGCTCTGGAAATAAACTTTGCTAATAGCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCCAGCTGCACGGCTCTGGAAATAAACTTTGCTAATAGCACAGT  600

seq1  GGTTCTATTTAATGATTTGTCTATTTTTACATTTAGCCACAAACATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATTTAATGATTTGTCTATTTTTACATTTAGCCACAAACATCATT  650

seq1  TCTTCAATAGTGGACTGCTACCTACTCACACTCATCCTGTCCTATTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATAGTGGACTGCTACCTACTCACACTCATCCTGTCCTATTTCTA  700

seq1  CTAACTCATCTACTGGACACACGGTAGGCTGTTCCTCAGAATCCCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCATCTACTGGACACACGGTAGGCTGTTCCTCAGAATCCCAGATA  750

seq1  TGTAAGAAGATGGTACAATGTCACAGCTAATGGAAACCTCTGACTCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAGATGGTACAATGTCACAGCTAATGGAAACCTCTGACTCTCTT  800

seq1  CCACCCTCTTTTTCCCTAATCACCATTTGAATTCCACGGATGAGAAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCTTTTTCCCTAATCACCATTTGAATTCCACGGATGAGAAGAAT  850

seq1  GGCAGAATCACAAGATGGAAAAGCTTTAGCACAGCTCCAACCCACACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATCACAAGATGGAAAAGCTTTAGCACAGCTCCAACCCACACTGG  900

seq1  ATATGATG-AAGGAAACCAATCTCCACTAT-GGTGATAACAAAATCTTGC  948
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ATATGATGAAAGGAAACCAATCTCCACTATGGGTGATAACAAAATCTTGC  950

seq1  AGTCATTTGTTACAGAGTTAACCTGTT-GTGGCTAT-GGGGAT-GGCCAG  995
      ||||||||| ||||||||||||||||| |||||||| |||||| ||||||
seq2  AGTCATTTG-TACAGAGTTAACCTGTTGGTGGCTATGGGGGATGGGCCAG  999

seq1  AATGGAGAGCT-GAGTTAGATCCTCAGGACCCACGTAAGAATCCA-GGCA  1043
      ||||||||||| ||||||||| ||||||| |||||  || ||||| ||||
seq2  AATGGAGAGCTGGAGTTAGAT-CTCAGGA-CCACGGTAG-ATCCAGGGCA  1046

seq1  TAATGAATGGTGCATGCTTTCATTCCCC-GCA-CTG-AGGAGG-CAAGCA  1089
      | ||| |||||||||||||||||||||| ||| ||| |||||| ||||||
seq2  T-ATG-ATGGTGCATGCTTTCATTCCCCGGCACCTGAAGGAGGCCAAGCA  1094

seq1  CAG-ACA-GGTCTTGGAGGCACACCATG-ATGCCA  1121
      ||| ||| ||||| | |||  ||||||| ||||||
seq2  CAGAACAGGGTCTGGAAGG--CACCATGAATGCCA  1127

seq1: chr2_162509004_162509442
seq2: B6Ng01-327J16.g_65_503 (reverse)

seq1  CCACCCCCACCCCCACCTGGGTGTACTTTCCACTTACAGACGTATGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCCACCTGGGTGTACTTTCCACTTACAGACGTATGCCCA  50

seq1  TTCCATGTTGTGTTTCTCAGGAAGACCTCAGACAGCTGCGTGTAAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTTGTGTTTCTCAGGAAGACCTCAGACAGCTGCGTGTAAGCCTG  100

seq1  GACCTGTAAAGGACTCTGGGGATTCAAGCAGGGAGTAAGATACAGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTAAAGGACTCTGGGGATTCAAGCAGGGAGTAAGATACAGCCTGT  150

seq1  TTTCCAAGGACTTTATGGTGTTGTGGACAGAAAGAAAAATGCATACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGACTTTATGGTGTTGTGGACAGAAAGAAAAATGCATACATGA  200

seq1  ACTATTCCAGGTTGTATGTGATCGTGCTGGAGTGGAAATGAAAATAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCAGGTTGTATGTGATCGTGCTGGAGTGGAAATGAAAATAACAG  250

seq1  CAATCTGAGGTGGGGAGGGAGGATGTGCCAGCTAGTCTTTATGTCAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGAGGTGGGGAGGGAGGATGTGCCAGCTAGTCTTTATGTCAACTT  300

seq1  GACACAGGCCAGAGTGCTCTTAGAGGAAGAAACCCCAATTGAGAAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGCCAGAGTGCTCTTAGAGGAAGAAACCCCAATTGAGAAAATGT  350

seq1  CTCCATAAGATCAGGCTATAGGCAAGCCTATAGGACATTTTGTTAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAGATCAGGCTATAGGCAAGCCTATAGGACATTTTGTTAGTGAT  400

seq1  TGATGTGGGAGGGTCCAGCCACATTGTGGATGAGAATTC  439
      |||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGGAGGGTCCAGCCACATTGTGGATGAGAATTC  439