BAC Information

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BAC

Clone NameB6Ng01-328F09
Chromosome2 (Build37)
Map Location 41,772,900 - 41,916,532
singlet/doubletdoublet
Overlap geneLrp1b, LOC625094
Upstream geneLOC100042629
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328F09.bB6Ng01-328F09.g
ACCGA115629GA115630
length1,238723
definitionB6Ng01-328F09.b B6Ng01-328F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,915,298 - 41,916,532)(41,772,900 - 41,773,622)
sequence
gaattcatttgtggataaggttagtctagagtcaagtgtgacttcagttg
acttacttcttactttcattacaacattatctatgctttaatttggccat
ggtagccatgatataatatgacaaattgttttgaatgtaaaagtgcaagg
ttaccttaagttataaatgaatgtatttaagtatggctatctcagtcttg
cttacaatgaagtgtgtctatagaatctctttatctatatgactatcttt
tctatatgtgactatggtttattttttatttcctgtgggggaaactatct
gctttacattctattaagtgttgatagatggtgttgacgaaaagtctttg
aacagtttttccaaagacaatatttccagttatgtttcttaagaacttca
ttcttctccaatgtttgtttcatctttatgatgtttaaaagggagtcttc
aatgttaaattacataggaggacactcactaggaaagctttcatttaggt
tacaaacagtacctgtccaggaacaaagagactgtaaagaagtatacctt
tttcctctgggcttgatgtgtcctttccttcgtgaagtagatagctaaca
tagcctgaaggggaacttgaaccatagttatagcaagtaagaagcagaac
cacagccatgactagttttcttgtagaaatacttatatcttagagaagag
gggagttatatatggtcttcaacatgcacatgggggtggacgatacagga
aaagatagactgtgtattggagtttggggtgcagcaattgctcattagtc
agccacactgggagtgagacacttctgtactgcagctggtggtgagtcag
gcatactgaaaatgggacttccatatagaatagctagccttgagtcactt
gttttcctgaaataatctcaatatacttactaattctacaagctatactt
ggacagaattccttgctcttgagcactggtgctctaccctccaggctgtc
tcctgtctcatacctaaaccatagtcttcacagaaaaagtcgcataacaa
ggaacagtcatcatttgctccaagactgacattatggtcacccagaattt
gtcagtatctcaggtttccaggttcctgggttatttggaattttcttctt
tcacagaaagctttgggggaatatatttaaggttcaatgccaaatgtcac
attaatatgttcggtggctgaataaatacccccacgtt

gaattcttttaatctttacttacataatgggcttaggcttcaagtacact
gaggtaaaaaaggaaaagggcaggcaatttccaatctgtcttgatgggta
ttctgtcagtattgggttggtaaattccatctgcctcttgttgattgacc
atgccaagggagaaaacactgtgaatcctgtcaggcattattttctcagt
ctggggagatgatcatatgcttttctttcatttggctgactttaacactg
attctcaaataacaatccaacatgaatttctagcagaaatcctgctttca
tttcaaagaatctgttagtacaatttttccactaatatttggttgatttt
ttttgcataagcagttgaaagagatcatcctatttcccctctctctgact
actaggattgccaaactgagcagctatacccaggcatttgaagatttctt
ttagggttaagtgtatggattgggccatgttcacaagattgcttatgaat
tggaaggcattgtttttcttagatccttaatcacattcgcaattgccttc
aagcctatatttccaaaagtaccatctggataccttcaaaaacagttttt
agagcctgcttctccactcagtatgtatatgtgtgtgtgtgtgtgtgtgt
gtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgatgagaacgtcaccggt
atgatttctgttttggtaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_41915298_41916532
seq2: B6Ng01-328F09.b_45_1282 (reverse)

seq1  AACGT--GGGTA-TTATTCAGCCACAG-ACATATACATAGTGACATATTT  46
      |||||  ||||| |||||||||||| | ||||||  || ||||||| || 
seq2  AACGTGGGGGTATTTATTCAGCCACCGAACATATTAAT-GTGACAT-TTG  48

seq1  GCATTGGACCAT-AATATATCCCCCAAAAGGCTTTCTGTGATAGAAGAAA  95
      |||||| ||| | ||||||| |||| ||| ||||||||||| ||||||||
seq2  GCATTGAACCTTAAATATATTCCCCCAAA-GCTTTCTGTGAAAGAAGAAA  97

seq1  A-TCCAAATAAACCAGGAACCTGGAAAACTGAGATACTGACAAA-TCT-G  142
      | ||||||||| ||||||||||||||| |||||||||||||||| ||| |
seq2  ATTCCAAATAACCCAGGAACCTGGAAACCTGAGATACTGACAAATTCTGG  147

seq1  GTGACCATAATGTCAGTCTTGGGAGCAAATGATGACTGTTCCTTGTTATG  192
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGACCATAATGTCAGTCTT-GGAGCAAATGATGACTGTTCCTTGTTATG  196

seq1  CGACTTTTTCTGTGAAGACTTATGGTTTAGGTATGAGACAGGAGACAGCC  242
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGACTTTTTCTGTGAAGAC-TATGGTTTAGGTATGAGACAGGAGACAGCC  245

seq1  TGGAGGGTAGAGCACCAGTGCTCAAGAGCAAGGAATTCTGTCCAAGTATA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTAGAGCACCAGTGCTCAAGAGCAAGGAATTCTGTCCAAGTATA  295

seq1  GCTTGTAGAATTAGTAAGTATATTGAGATTATTTCAGGAAAACAAGTGAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAGAATTAGTAAGTATATTGAGATTATTTCAGGAAAACAAGTGAC  345

seq1  TCAAGGCTAGCTATTCTATATGGAAGTCCCATTTTCAGTATGCCTGACTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTAGCTATTCTATATGGAAGTCCCATTTTCAGTATGCCTGACTC  395

seq1  ACCACCAGCTGCAGTACAGAAGTGTCTCACTCCCAGTGTGGCTGACTAAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGCTGCAGTACAGAAGTGTCTCACTCCCAGTGTGGCTGACTAAT  445

seq1  GAGCAATTGCTGCACCCCAAACTCCAATACACAGTCTATCTTTTCCTGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTGCTGCACCCCAAACTCCAATACACAGTCTATCTTTTCCTGTA  495

seq1  TCGTCCACCCCCATGTGCATGTTGAAGACCATATATAACTCCCCTCTTCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCACCCCCATGTGCATGTTGAAGACCATATATAACTCCCCTCTTCT  545

seq1  CTAAGATATAAGTATTTCTACAAGAAAACTAGTCATGGCTGTGGTTCTGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATATAAGTATTTCTACAAGAAAACTAGTCATGGCTGTGGTTCTGC  595

seq1  TTCTTACTTGCTATAACTATGGTTCAAGTTCCCCTTCAGGCTATGTTAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTGCTATAACTATGGTTCAAGTTCCCCTTCAGGCTATGTTAGC  645

seq1  TATCTACTTCACGAAGGAAAGGACACATCAAGCCCAGAGGAAAAAGGTAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTTCACGAAGGAAAGGACACATCAAGCCCAGAGGAAAAAGGTAT  695

seq1  ACTTCTTTACAGTCTCTTTGTTCCTGGACAGGTACTGTTTGTAACCTAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTACAGTCTCTTTGTTCCTGGACAGGTACTGTTTGTAACCTAAA  745

seq1  TGAAAGCTTTCCTAGTGAGTGTCCTCCTATGTAATTTAACATTGAAGACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTTCCTAGTGAGTGTCCTCCTATGTAATTTAACATTGAAGACT  795

seq1  CCCTTTTAAACATCATAAAGATGAAACAAACATTGGAGAAGAATGAAGTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAAACATCATAAAGATGAAACAAACATTGGAGAAGAATGAAGTT  845

seq1  CTTAAGAAACATAACTGGAAATATTGTCTTTGGAAAAACTGTTCAAAGAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAACATAACTGGAAATATTGTCTTTGGAAAAACTGTTCAAAGAC  895

seq1  TTTTCGTCAACACCATCTATCAACACTTAATAGAATGTAAAGCAGATAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTCAACACCATCTATCAACACTTAATAGAATGTAAAGCAGATAGT  945

seq1  TTCCCCCACAGGAAATAAAAAATAAACCATAGTCACATATAGAAAAGATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCACAGGAAATAAAAAATAAACCATAGTCACATATAGAAAAGATA  995

seq1  GTCATATAGATAAAGAGATTCTATAGACACACTTCATTGTAAGCAAGACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATAGATAAAGAGATTCTATAGACACACTTCATTGTAAGCAAGACT  1045

seq1  GAGATAGCCATACTTAAATACATTCATTTATAACTTAAGGTAACCTTGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGCCATACTTAAATACATTCATTTATAACTTAAGGTAACCTTGCA  1095

seq1  CTTTTACATTCAAAACAATTTGTCATATTATATCATGGCTACCATGGCCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACATTCAAAACAATTTGTCATATTATATCATGGCTACCATGGCCA  1145

seq1  AATTAAAGCATAGATAATGTTGTAATGAAAGTAAGAAGTAAGTCAACTGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGCATAGATAATGTTGTAATGAAAGTAAGAAGTAAGTCAACTGA  1195

seq1  AGTCACACTTGACTCTAGACTAACCTTATCCACAAATGAATTC  1235
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACTTGACTCTAGACTAACCTTATCCACAAATGAATTC  1238


seq1: chr2_41772900_41773622
seq2: B6Ng01-328F09.g_64_786

seq1  GAATTCTTTTAATCTTTACTTACATAATGGGCTTAGGCTTCAAGTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATCTTTACTTACATAATGGGCTTAGGCTTCAAGTACACT  50

seq1  GAGGTAAAAAAGGAAAAGGGCAGGCAATTTCCAATCTGTCTTGATGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAAAAAGGAAAAGGGCAGGCAATTTCCAATCTGTCTTGATGGGTA  100

seq1  TTCTGTCAGTATTGGGTTGGTAAATTCCATCTGCCTCTTGTTGATTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAGTATTGGGTTGGTAAATTCCATCTGCCTCTTGTTGATTGACC  150

seq1  ATGCCAAGGGAGAAAACACTGTGAATCCTGTCAGGCATTATTTTCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGGGAGAAAACACTGTGAATCCTGTCAGGCATTATTTTCTCAGT  200

seq1  CTGGGGAGATGATCATATGCTTTTCTTTCATTTGGCTGACTTTAACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGATGATCATATGCTTTTCTTTCATTTGGCTGACTTTAACACTG  250

seq1  ATTCTCAAATAACAATCCAACATGAATTTCTAGCAGAAATCCTGCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAATAACAATCCAACATGAATTTCTAGCAGAAATCCTGCTTTCA  300

seq1  TTTCAAAGAATCTGTTAGTACAATTTTTCCACTAATATTTGGTTGATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGAATCTGTTAGTACAATTTTTCCACTAATATTTGGTTGATTTT  350

seq1  TTTTGCATAAGCAGTTGAAAGAGATCATCCTATTTCCCCTCTCTCTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATAAGCAGTTGAAAGAGATCATCCTATTTCCCCTCTCTCTGACT  400

seq1  ACTAGGATTGCCAAACTGAGCAGCTATACCCAGGCATTTGAAGATTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATTGCCAAACTGAGCAGCTATACCCAGGCATTTGAAGATTTCTT  450

seq1  TTAGGGTTAAGTGTATGGATTGGGCCATGTTCACAAGATTGCTTATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTAAGTGTATGGATTGGGCCATGTTCACAAGATTGCTTATGAAT  500

seq1  TGGAAGGCATTGTTTTTCTTAGATCCTTAATCACATTCGCAATTGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCATTGTTTTTCTTAGATCCTTAATCACATTCGCAATTGCCTTC  550

seq1  AAGCCTATATTTCCAAAAGTACCATCTGGATACCTTCAAAAACAGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTATATTTCCAAAAGTACCATCTGGATACCTTCAAAAACAGTTTTT  600

seq1  AGAGCCTGCTTCTCCACTCAGTATGTATATGTGTGTGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCTTCTCCACTCAGTATGTATATGTGTGTGTGTGTGTGTGTGT  650

seq1  GTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGATGAGTATGTCACTGTT  700
      |||||||||||||||||||||||||||||||||||||| | ||||| | |
seq2  GTGCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGATGAGAACGTCACCGGT  700

seq1  ATGGTTACTGTTTTGGTAAAAAT  723
      ||| || ||||||||||||||||
seq2  ATGATTTCTGTTTTGGTAAAAAT  723


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