BAC Information

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BAC

Clone NameB6Ng01-328J22
Chromosome2 (Build37)
Map Location 155,023,943 - 155,025,132
singlet/doubletsinglet
Overlap geneItch, LOC668931
Upstream geneU46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, LOC100043877
Downstream geneDynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328J22.bB6Ng01-328J22.g
ACCGA115831GA115832
length1,2351,191
definitionB6Ng01-328J22.b B6Ng01-328J22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaatctgcaaaagcccgcagtgcccaggaactttttagcttgt
tttgcactggtcggtggaggagtatgaaacacagtctctttttttttttt
ttagctgcttcaacaggtaggcctccggactctaaggactcagcttctgt
attagcaccccttttgttatctcttaaacacattgatcttcagccaaaag
ctttcgtttgttgccaggtactatctaagttttctaattttcctgacttt
tgtgaccagcattttatttttcttatctttctgtctcacagcacagctct
gattttgactctgatctctgtctttgtcagcctcatgtttctttaactct
taacttttgtaactttctgttaccttggtcagattgttgggacactttct
agtcccacagagacgagacccccatcagagcctggcagttagactcacag
gtgctccttaccttggacagaagccccaagtgggcggatgcctccctcac
tggaacttggaacagactctgtcagagaccatcccgtgagaaagtgagcc
cttcacaatctccctagcaggccaaatggccttgtactgagagctggttg
tcacccccctttcctccctattcctttcctggcacctgaggctgtaaaag
ctgaattatagtcccctcttccctatctcttcctgagttcccatgccatc
caaggacatgagttacgcctgagcctagcctgacccccaaggctgtcaag
gaggatcgatgttccagagataagatccagagtgcccgctgcctggcgcc
tgacttcggcccccatgtcagcagatgcccacttctttgttctttgtata
attctccctcgacccctcccatattccccgcgatgtatgctttaaaaaga
aggcacctcagcctaataaacgagaccttgataggttcaatctacttggt
cctccgactcttctttcttttactcccatttccttccaggtttgcggtcc
ccctcgcacccacgaatactgagtccgcggacgggataagtgcgccgacg
tgagggcgagttccgatcgtatttctatcggtggaggtcagaagaagttc
gtcccgacccacatttcaagcagtgagactccttcgccgctcacgaagag
acggagagtcttggtgagtgatcactccacttcaggaaatcgcatactag
ctatcctagaagagcgcggcctttcatcaataacg
gaattccatccactgtgaatctcatttcccagccttctggtaagggcttt
tcatttaactgactacaaaatacagaggaaaacaaaagatattaagactt
gcttcggggggatcgggcttccactccagcgcaatcatgactattatgtc
ctataatgaaggggccgtcatggccatgaagggaaagaactgtgtggcca
tggctgcagacaggcatttcgggatccagacccagatggtgaccatggac
ttccagaagatctttcccatgggtgacaggctctacataggcctgtccgg
ccgggccactgacatccagacagttgcccaacgtctcaagttccgactga
acctgtatgaggtgaaagaatgtcggcagatcaagccttacaccctcctc
atgagcatggtggccaacctcctgtatgagaagcggttcggtccctacta
cacagagcctgtcattgcttcattgctggcctggacccgaagaccttcaa
gctcttcatttgctctctggacctcactggctgtcccatggtgactgatg
actttgtagtcagtggtacctgctctgaacaaatgtatgggatgtgtgag
tctctctgggagcccaacatggatccagaacacctgtttgaaactatttc
tcaggccatgctgaacgcggtggactgggatgccatgtcgggcatggacg
tcatcgtccacgtcattgagaaagacaagatcagcaccaggacgctgaag
gcccagatggactaacctgtgctctgtggatggactaacctgtgctctgg
tcccatctcccttttgttgtttttctttttaataaaatcgcctttctttc
aaaaaaaaaaaaaaaaaagacttgctttttaccaaatacagaaactaaaa
atacccataaatcttcagaaacatacatgggtcctgtattttcaggtgta
tactagagatctcctagctggacatcctacaaacacatacattaaaattg
tcatcaaccacattcaaatgatcatcacagattattggcctaatgtcctc
catctacttaataacctccacttccaaacagccaggcacctgaattccac
tccatgagacctttgcagtctgattactcatccctattcttcgaatccac
cctgaacctagcctaccttacctggcactgtcaagcagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155023943_155025132
seq2: B6Ng01-328J22.g_66_1256 (reverse)

seq1  CAGCTGCTTGGACAGTG-CAGGTGAAGATA-GCTAGAGTCAGGGTGGGAA  48
      ||||||||| ||||||| ||||| ||| || |||||  ||||||| ||| 
seq2  CAGCTGCTT-GACAGTGCCAGGT-AAGGTAGGCTAGGTTCAGGGT-GGAT  47

seq1  TCGAAGATAAGGGATGAGTATCAAGACTGCAAAGGTCTCAT-GAGT-GAA  96
      |||||||  |||||||||||   |||||||||||||||||| |||| |||
seq2  TCGAAGAATAGGGATGAGTAATCAGACTGCAAAGGTCTCATGGAGTGGAA  97

seq1  CTCAGGTGCCCTGGCTGTTT-GAAGTG--AGTTATTAAGTAGATGGGAGA  143
       ||||||| ||||||||||| ||||||   |||||||||||||| |||| 
seq2  TTCAGGTG-CCTGGCTGTTTGGAAGTGGAGGTTATTAAGTAGAT-GGAGG  145

seq1  ACATTA-GCCAATAATTCTGTGATGATTCATTTGAATGTTGTTGATGACA  192
      |||||| |||||||| |||||||||| |||||||||||| ||||||||||
seq2  ACATTAGGCCAATAA-TCTGTGATGA-TCATTTGAATGTGGTTGATGACA  193

seq1  ATTTTAATGTATGTGTTTGTAGGATGTCCAGCTA-GAGATCTCTAGTATA  241
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTAATGTATGTGTTTGTAGGATGTCCAGCTAGGAGATCTCTAGTATA  243

seq1  CACCTGAAAATACAGGA-CCATGTATGTTTTCTGAAAGATTTATGGGTAT  290
      ||||||||||||||||| ||||||||| |||||| |||||||||||||||
seq2  CACCTGAAAATACAGGACCCATGTATG-TTTCTG-AAGATTTATGGGTAT  291

seq1  TTTTAGTTTCTGTATTTGGTAAAAAGCAAGTCTTTTTTTTTTTTTTTTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTCTGTATTTGGTAAAAAGCAAGTCTTTTTTTTTTTTTTTTTT  341

seq1  GAAAGAAAGGCGATTTTATTAAAAAGAAAAACAACAAAAGGGAGATGGGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGCGATTTTATTAAAAAGAAAAACAACAAAAGGGAGATGGGA  391

seq1  CCAGAGCACAGGTTAGTCCATCCACAGAGCACAGGTTAGTCCATCTGGGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCACAGGTTAGTCCATCCACAGAGCACAGGTTAGTCCATCTGGGC  441

seq1  CTTCAGCGTCCTGGTGCTGATCTTGTCTTTCTCAATGACGTGGACGATGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCGTCCTGGTGCTGATCTTGTCTTTCTCAATGACGTGGACGATGA  491

seq1  CGTCCATGCCCGACATGGCATCCCAGTCCACCGCGTTCAGCATGGCCTGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATGCCCGACATGGCATCCCAGTCCACCGCGTTCAGCATGGCCTGA  541

seq1  GAAATAGTTTCAAACAGGTGTTCTGGATCCATGTTGGGCTCCCAGAGAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTTTCAAACAGGTGTTCTGGATCCATGTTGGGCTCCCAGAGAGA  591

seq1  CTCACACATCCCATACATTTGTTCAGAGCAGGTACCACTGACTACAAAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACATCCCATACATTTGTTCAGAGCAGGTACCACTGACTACAAAGT  641

seq1  CATCAGTCACCATGGGACAGCCAGTGAGGTCCAGAGAGCAAATGAAGAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCACCATGGGACAGCCAGTGAGGTCCAGAGAGCAAATGAAGAGC  691

seq1  TTGAAGGTCTTCGGGTCCAGGCCAGCAATGAAGCAATGACAGGCTCTGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGTCTTCGGGTCCAGGCCAGCAATGAAGCAATGACAGGCTCTGTG  741

seq1  TAGTAGGGACCGAACCGCTTCTCATACAGGAGGTTGGCCACCATGCTCAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGGACCGAACCGCTTCTCATACAGGAGGTTGGCCACCATGCTCAT  791

seq1  GAGGAGGGTGTAAGGCTTGATCTGCCGACATTCTTTCACCTCATACAGGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTGTAAGGCTTGATCTGCCGACATTCTTTCACCTCATACAGGT  841

seq1  TCAGTCGGAACTTGAGACGTTGGGCAACTGTCTGGATGTCAGTGGCCCGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCGGAACTTGAGACGTTGGGCAACTGTCTGGATGTCAGTGGCCCGG  891

seq1  CCGGACAGGCCTATGTAGAGCCTGTCACCCATGGGAAAGATCTTCTGGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACAGGCCTATGTAGAGCCTGTCACCCATGGGAAAGATCTTCTGGAA  941

seq1  GTCCATGGTCACCATCTGGGTCTGGATCCCGAAATGCCTGTCTGCAGCCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGTCACCATCTGGGTCTGGATCCCGAAATGCCTGTCTGCAGCCA  991

seq1  TGGCCACACAGTTCTTTCCCTTCATGGCCATGACGGCCCCTTCATTATAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACACAGTTCTTTCCCTTCATGGCCATGACGGCCCCTTCATTATAG  1041

seq1  GACATAATAGTCATGATTGCGCTGGAGTGGAAGCCCGATCCCCCCGAAGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATAGTCATGATTGCGCTGGAGTGGAAGCCCGATCCCCCCGAAGC  1091

seq1  AAGTCTTAATATCTTTTGTTTTCCTCTGTATTTTGTAGTCAGTTAAATGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTAATATCTTTTGTTTTCCTCTGTATTTTGTAGTCAGTTAAATGA  1141

seq1  AAAGCCCTTACCAGAAGGCTGGGAAATGAGATTCACAGTGGATGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTTACCAGAAGGCTGGGAAATGAGATTCACAGTGGATGGAATTC  1191