BAC Information

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BAC

Clone NameB6Ng01-329E10
Chromosome2 (Build37)
Map Location 92,274,955 - 92,424,870
singlet/doubletdoublet
Overlap geneSlc35c1, LOC100042775, LOC100043205
Upstream gene1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2
Downstream geneChst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329E10.bB6Ng01-329E10.g
ACCGA116285GA116286
length1,1751,006
definitionB6Ng01-329E10.b B6Ng01-329E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,423,696 - 92,424,870)(92,274,955 - 92,275,962)
sequence
gaattcagcaacaggataggcaagtagtcaggcactttccaaaaaaaggc
taaaggtttaccttccctttcattgggtctcagcatccttgcctgaatca
tagagttacgtcccctaagcctaccccactggcttcccaggactctgcag
caaccaaaagaaatacacagggccctctacaagtaatggcacgaccaaga
agaggaccccaaaacaacctcctttgggaaaaggcacaggcttgaccatg
ataagctaacgataagctaacgtggcaaagaacataaatgtcacagaaag
caagatacactagaacaagatttttaaaaaagtgatagtgggaaacaaga
aaagagagaaaagagatggtggcaagaaagagaaatccaagagcagacag
gaggcctgggcctggctgccacacacccctgacccactgcaacaggtcct
ggtcacatctctccttttcctgtgcatatggaaacttggggtgatctctg
aggtgcttcctgaagtcagaatgaggacccaaccttggatagcctccaag
gcgaatgaatggctatcttgagcagcattgtcaaaaatgggaggctcaca
agggcttgccgagaagccacatccatccccaagtataaatagactggagg
caagccccaaatcagaaaccagctaagtgtagaacgtaaagaaatctctc
ccacggagagtcaggctgtagatcttgtcaaagttgcagaagactgggag
atcatgtgacttgctgaatgtggaggagccctgagagagaaacggaccct
cggagtgccaagtccttggtgatggacaagggagcagatagaggtcttgg
tctcttgagaaccctgtgggctgtagaggggcatcactagcccacttaca
ccaagggctgctctttctcctactttcccaagaatgtttgtcttccactt
gctatggagtctgcaactcactgctcagaaggctgagcagaagccacgga
gatgtctgtgcttagtacaataaaaaaggcagtctgggacttgagcctgc
actctcccttagcccaaactcaggtgaggtcagagacgtggtggagtgtc
ttggcattagttgactctgcatatcaacactgggttgcacagtttggtac
tctgaaaggtgtgtgcagaccatgg
gaattcatttcttttacgttctgtttagcagacacagtgcagttattttg
cacaaaactctgaactggattctatgtgggaatcagagatgtgcagggca
atattctcctgtctcctttgggaatcctttgattctttggagattctggc
agagtttgctgattgaacaagtgcagcaaccgttgcacttgggctaagat
gggctagttgggatggagggctggagctatccagcagagaactgttccga
tttgtccttgtgttgatcctatgggtagtcaccttccccatcttgggaat
gagcaatgaaagaatctagaatttagtcagcaatttaatggcattaattg
gcaccactctctgactacagcgtcattacgagcctctcatttccagcgct
ttggacatgctgttctctcacatcacatgccccagcccacaccctcgtgc
ctcctgttttccctgtgacagctgttattttccagtttcctgggcccaac
ctgcacaggggctcacctcatttggtgtcttccccccaccctccggtttt
agtacatagtactgggattgtttagctattgtatgtcagctccatcagac
tataatctagctcagtacttggtaccgaaggatcatatgaatcaaacata
agaggcttgcattggccagagccttaaagtcatccaagtctctgcccgac
tctctcctttgaatctcttctgcaagtacttgatgagtgaactgatattc
cctatgcttttctttaaacacttgggtttttttcattatttttaatctca
tgtttagctgtgtgtctgtgtaggagtgacggcaagtgtctagtggactc
ctgaatagagtgtttctgggggttggagttacaaaggctgttaccaagcc
tcctgttgtgggtgctgagaagtacccccaagtcaggttctctgcaagga
acgtacacactgtttaacctctgacatctctcgcgcgtcccatcttttct
ttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92423696_92424870
seq2: B6Ng01-329E10.b_47_1221 (reverse)

seq1  CCATGGTCTGCACA---CTTTCAGAGTAACAAAAACTGTTGGCACCCAGT  47
      ||||||||||||||   ||||||||||| |  |||||| ||  |||||||
seq2  CCATGGTCTGCACACACCTTTCAGAGTACC--AAACTG-TGCAACCCAGT  47

seq1  GTTGATATGCAGAGTCACTAAATGCC-AGACACT-CACACGGTCTCTTGA  95
      |||||||||||||||||   |||||| ||||||| |||   ||||| |||
seq2  GTTGATATGCAGAGTCAACTAATGCCAAGACACTCCACCACGTCTC-TGA  96

seq1  CCTCACCTGAGTTTTGGGCT-AGGGAGAGTGCAGGGCTCAAGT-CCAGAC  143
      ||||||||||| |||||||| |||||||||||| ||||||||| ||||||
seq2  CCTCACCTGAG-TTTGGGCTAAGGGAGAGTGCA-GGCTCAAGTCCCAGAC  144

seq1  TGCCTTTTTTATTGTACTAAGCACAGACATCTCCGTGGCTTCTGCTCAGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTTTATTGTACTAAGCACAGACATCTCCGTGGCTTCTGCTCAGC  194

seq1  CTTCTGAGCAGTGAGTTGCAGACTCCATAGCAAGTGGAAGACAAACATTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCAGTGAGTTGCAGACTCCATAGCAAGTGGAAGACAAACATTC  244

seq1  TTGGGAAAAGTAGGAGAAAGAGCAGCCCTTGGTGTAAGTGGGCTAGTGAT  293
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGG-AAAGTAGGAGAAAGAGCAGCCCTTGGTGTAAGTGGGCTAGTGAT  293

seq1  GCCCCTCTACAGCCCACAGGGTTCTCAAGAGACCAAGACCTCTATCTGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTACAGCCCACAGGGTTCTCAAGAGACCAAGACCTCTATCTGCT  343

seq1  CCCTTGTCCATCACCAAGGACTTGGCACTCCGAGGGTCCGTTTCTCTCTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCCATCACCAAGGACTTGGCACTCCGAGGGTCCGTTTCTCTCTC  393

seq1  AGGGCTCCTCCACATTCAGCAAGTCACATGATCTCCCAGTCTTCTGCAAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCTCCACATTCAGCAAGTCACATGATCTCCCAGTCTTCTGCAAC  443

seq1  TTTGACAAGATCTACAGCCTGACTCTCCGTGGGAGAGATTTCTTTACGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAGATCTACAGCCTGACTCTCCGTGGGAGAGATTTCTTTACGTT  493

seq1  CTACACTTAGCTGGTTTCTGATTTGGGGCTTGCCTCCAGTCTATTTATAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTAGCTGGTTTCTGATTTGGGGCTTGCCTCCAGTCTATTTATAC  543

seq1  TTGGGGATGGATGTGGCTTCTCGGCAAGCCCTTGTGAGCCTCCCATTTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATGGATGTGGCTTCTCGGCAAGCCCTTGTGAGCCTCCCATTTTT  593

seq1  GACAATGCTGCTCAAGATAGCCATTCATTCGCCTTGGAGGCTATCCAAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCTGCTCAAGATAGCCATTCATTCGCCTTGGAGGCTATCCAAGG  643

seq1  TTGGGTCCTCATTCTGACTTCAGGAAGCACCTCAGAGATCACCCCAAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCTCATTCTGACTTCAGGAAGCACCTCAGAGATCACCCCAAGTT  693

seq1  TCCATATGCACAGGAAAAGGAGAGATGTGACCAGGACCTGTTGCAGTGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGCACAGGAAAAGGAGAGATGTGACCAGGACCTGTTGCAGTGGG  743

seq1  TCAGGGGTGTGTGGCAGCCAGGCCCAGGCCTCCTGTCTGCTCTTGGATTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGTGTGTGGCAGCCAGGCCCAGGCCTCCTGTCTGCTCTTGGATTT  793

seq1  CTCTTTCTTGCCACCATCTCTTTTCTCTCTTTTCTTGTTTCCCACTATCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTGCCACCATCTCTTTTCTCTCTTTTCTTGTTTCCCACTATCA  843

seq1  CTTTTTTAAAAATCTTGTTCTAGTGTATCTTGCTTTCTGTGACATTTATG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAAAAATCTTGTTCTAGTGTATCTTGCTTTCTGTGACATTTATG  893

seq1  TTCTTTGCCACGTTAGCTTATCGTTAGCTTATCATGGTCAAGCCTGTGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCCACGTTAGCTTATCGTTAGCTTATCATGGTCAAGCCTGTGCC  943

seq1  TTTTCCCAAAGGAGGTTGTTTTGGGGTCCTCTTCTTGGTCGTGCCATTAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAAAGGAGGTTGTTTTGGGGTCCTCTTCTTGGTCGTGCCATTAC  993

seq1  TTGTAGAGGGCCCTGTGTATTTCTTTTGGTTGCTGCAGAGTCCTGGGAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGGGCCCTGTGTATTTCTTTTGGTTGCTGCAGAGTCCTGGGAAG  1043

seq1  CCAGTGGGGTAGGCTTAGGGGACGTAACTCTATGATTCAGGCAAGGATGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGTAGGCTTAGGGGACGTAACTCTATGATTCAGGCAAGGATGC  1093

seq1  TGAGACCCAATGAAAGGGAAGGTAAACCTTTAGCCTTTTTTTGGAAAGTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCAATGAAAGGGAAGGTAAACCTTTAGCCTTTTTTTGGAAAGTG  1143

seq1  CCTGACTACTTGCCTATCCTGTTGCTGAATTC  1175
      ||||||||||||||||||||||||||||||||
seq2  CCTGACTACTTGCCTATCCTGTTGCTGAATTC  1175

seq1: chr2_92274955_92275962
seq2: B6Ng01-329E10.g_66_1071

seq1  GAATTCATTTCTTTTACGTTCTGTTTAGCAGACACAGTGCAGTTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTTTACGTTCTGTTTAGCAGACACAGTGCAGTTATTTTG  50

seq1  CACAAAACTCTGAACTGGATTCTATGTGGGAATCAGAGATGTGCAGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACTCTGAACTGGATTCTATGTGGGAATCAGAGATGTGCAGGGCA  100

seq1  ATATTCTCCTGTCTCCTTTGGGAATCCTTTGATTCTTTGGAGATTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCCTGTCTCCTTTGGGAATCCTTTGATTCTTTGGAGATTCTGGC  150

seq1  AGAGTTTGCTGATTGAACAAGTGCAGCAACCGTTGCACTTGGGCTAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGCTGATTGAACAAGTGCAGCAACCGTTGCACTTGGGCTAAGAT  200

seq1  GGGCTAGTTGGGATGGAGGGCTGGAGCTATCCAGCAGAGAACTGTTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGTTGGGATGGAGGGCTGGAGCTATCCAGCAGAGAACTGTTCCGA  250

seq1  TTTGTCCTTGTGTTGATCCTATGGGTAGTCACCTTCCCCATCTTGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTGTGTTGATCCTATGGGTAGTCACCTTCCCCATCTTGGGAAT  300

seq1  GAGCAATGAAAGAATCTAGAATTTAGTCAGCAATTTAATGGCATTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGAAAGAATCTAGAATTTAGTCAGCAATTTAATGGCATTAATTG  350

seq1  GCACCACTCTCTGACTACAGCGTCATTACGAGCCTCTCATTTCCAGCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACTCTCTGACTACAGCGTCATTACGAGCCTCTCATTTCCAGCGCT  400

seq1  TTGGACATGCTGTTCTCTCACATCACATGCCCCAGCCCACACCCTCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATGCTGTTCTCTCACATCACATGCCCCAGCCCACACCCTCGTGC  450

seq1  CTCCTGTTTTCCCTGTGACAGCTGTTATTTTCCAGTTTCCTGGGCCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTTCCCTGTGACAGCTGTTATTTTCCAGTTTCCTGGGCCCAAC  500

seq1  CTGCACAGGGGCTCACCTCATTTGGTGTCTTCCCCCCACCCTCCGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGGGGCTCACCTCATTTGGTGTCTTCCCCCCACCCTCCGGTTTT  550

seq1  AGTACATAGTACTGGGATTGTTTAGCTATTGTATGTCAGCTCCATCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATAGTACTGGGATTGTTTAGCTATTGTATGTCAGCTCCATCAGAC  600

seq1  TATAATCTAGCTCAGTACTTGGTACCGAAGGATCATATGAATCAAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTAGCTCAGTACTTGGTACCGAAGGATCATATGAATCAAACATA  650

seq1  AGAGGCTTGCATTGGCCAGAGCCTTAAAGTCATCCAAGTCTCTGCCCGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTGCATTGGCCAGAGCCTTAAAGTCATCCAAGTCTCTGCCCGAC  700

seq1  TCTCTCCTTTGAATCTCTTCTGCAAGTACTTGATGAGTGAACTGATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTTGAATCTCTTCTGCAAGTACTTGATGAGTGAACTGATATTC  750

seq1  CCTATGCTTTTCTTTAAACACTTGGGTTTTTTTCATTATTTTTAATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTTTTCTTTAAACACTTGGGTTTTTTTCATTATTTTTAATCTCA  800

seq1  TGTTTAGCTGTGTGTCTGTGTAGGAGTGACGGCAAGTGTCTAGTGGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGCTGTGTGTCTGTGTAGGAGTGACGGCAAGTGTCTAGTGGACTC  850

seq1  CTGAATAGAGTGTTTCTGGGGGTTGGAGTTAC-AAGGCTGTTACC-AGCC  898
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CTGAATAGAGTGTTTCTGGGGGTTGGAGTTACAAAGGCTGTTACCAAGCC  900

seq1  TCCTGTTGTGGGTGCTGAGAAGTACCCCCAAGTCAGGTTCTCTGCAAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGTGGGTGCTGAGAAGTACCCCCAAGTCAGGTTCTCTGCAAGGA  950

seq1  ACGTACACACTG-TTAACCTCTGAACCATCTCTCGCGCGTCCCCTTTCTT  997
      |||||||||||| |||||||||||  |||||||||||||||||   ||||
seq2  ACGTACACACTGTTTAACCTCTGA--CATCTCTCGCGCGTCCC--ATCTT  996

seq1  TTCTTTTCTTT  1008
      ||| |||||||
seq2  TTC-TTTCTTT  1006