BAC Information

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BAC

Clone NameB6Ng01-329G14
Chromosome2 (Build37)
Map Location 154,956,126 - 155,025,132
singlet/doubletdoublet
Overlap geneItch, LOC100043877, LOC668931
Upstream gene1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy
Downstream geneDynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329G14.bB6Ng01-329G14.g
ACCGA116383GA116384
length1,1521,182
definitionB6Ng01-329G14.b B6Ng01-329G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,956,126 - 154,957,264)(155,023,954 - 155,025,132)
sequence
gaattcactttgtagaccaggctggccttgaactcagaaatctgcctgcc
tctgcctcctgagggctgggattaaaggcgtgcaccaccacgtccggctt
cagtgttttcatttcttataaaagcccttcattgggctggagagatagct
tattagtaggtagagtgcttactgcacaaatataaagttgtgattaccag
tatccatgtcaaaagctgggcttggtgacacatacctgtgatcccagtac
tggaaagtgggaaagaggaggacccctggagtgtgccggccagccagtct
agctgaattggtgacctcctggcttagtaagccactctatctcagaaaat
agtgattgaagaagacacttagattctacctctgccctctgaaatccctc
aaccccagagacaaaaacacacagagacacacaaatacacacacaaacac
atacactgagccacacagatatacagataaacgcacacgcacatacacac
aaactttgtgacctcaagtttcctgagatgaaccttggaggcactgggct
ccacctcctcaggatgtcagtctctgaataaacgtggtttccttctcatc
attttcctctagaaaagggctgacattcagtgacaagcagttggacattg
gttcagtaacagtgagttgttgggagaaggactgaattttaaaaatccat
atttctctgaagtccacattgttaattcttgctagttcctgccttgcagg
tcagagatgattcccccattgacactggcagaaggctaaagcagtatata
gttcagtaggtcacaaaatgtgattcctgggtgtcagcatcactgggaaa
atgcccattcttggcttcatctagaactttctaaacttctaggggttagg
gtccatcttagggacataggcacatgtatagtatatacaaatccaacatt
aaatcccagaacaataatttttttaaaaaagattttcttggggagaagtt
tggagtatagctttaacttcatcacgttagttttacctactaatcataga
gaagtttcattgagctgggccagtggttggcgccacgccttaagttccag
ccacttgggaggtagaaatacaggccggaatttcctggaattcgagaggc
ca
gaattccatccactgtgaatctcatttcccagccttctggtaagggcttt
tcatttaactgactacaaaatacagaggaaaacaaaagatattaagactt
gcttcggggggatcgggcttccactccagcgcaatcatgactattatgtc
ctataatgaaggggccgtcatggccatgaagggaaagaactgtgtggcca
tggctgcagacaggcatttcgggatccagacccagatggtgaccatggac
ttccagaagatctttcccatgggtgacaggctctacataggcctgtccgg
ccgggccactgacatccagacagttgcccaacgtctcaagttccgactga
acctgtatgaggtgaaagaatgtcggcagatcaagccttacaccctcctc
atgagcatggtggccaacctcctgtatgagaagcggttcggtccctacta
cacagagcctgtcattgcttcattgctggcctggacccgaagaccttcaa
gctcttcatttgctctctggacctcactggctgtcccatggtgactgatg
actttgtagtcagtggtacctgctctgaacaaatgtatgggatgtgtgag
tctctctgggagcccaacatggatccagaacacctgtttgaactatttct
caggccatgctgaacgcggtggactgggatgccatgtcgggcatggacgt
catcgtccacgtcattgagaaagacaagatcagcaccaggacgctgaaag
gcccagatggactaacctgtgctctgtggatggactaacctgtgctctgg
tcccatctcccttttgttgtttttctttttaataaaatcgcctttctttc
aaaaaaaaaaaaaaaaaaagacttgctttttaccaaatacagaaactaaa
aatacccataaatctttcagaaaacatacatgggtcctgtatttttcagg
tgtatactagagatctctagctggacatcctacaaacacatacattaaaa
ttgtcatcacacattcaatgatcatccacagaattatggctaatgttctc
ccattctacttaaatactcactcaaacagcagggcactgagttcactcat
gagactttgcagtcttgaatctcatcttatcttcgtaattcccacctgac
ctctagccttatcttttcacctgtgccactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_154956126_154957264
seq2: B6Ng01-329G14.b_45_1196

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCC  50

seq1  TCTGCCTCCTGAGGGCTGGGATTAAAGGCGTGCACCACCACGTCCGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGGGCTGGGATTAAAGGCGTGCACCACCACGTCCGGCTT  100

seq1  CAGTGTTTTCATTTCTTATAAAAGCCCTTCATTGGGCTGGAGAGATAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTTCATTTCTTATAAAAGCCCTTCATTGGGCTGGAGAGATAGCT  150

seq1  TATTAGTAGGTAGAGTGCTTACTGCACAAATATAAAGTTGTGATTACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTAGGTAGAGTGCTTACTGCACAAATATAAAGTTGTGATTACCAG  200

seq1  TATCCATGTCAAAAGCTGGGCTTGGTGACACATACCTGTGATCCCAGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGTCAAAAGCTGGGCTTGGTGACACATACCTGTGATCCCAGTAC  250

seq1  TGGAAAGTGGGAAAGAGGAGGACCCCTGGAGTGTGCCGGCCAGCCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTGGGAAAGAGGAGGACCCCTGGAGTGTGCCGGCCAGCCAGTCT  300

seq1  AGCTGAATTGGTGACCTCCTGGCTTAGTAAGCCACTCTATCTCAGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATTGGTGACCTCCTGGCTTAGTAAGCCACTCTATCTCAGAAAAT  350

seq1  AGTGATTGAAGAAGACACTTAGATTCTACCTCTGCCCTCTGAAATCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTGAAGAAGACACTTAGATTCTACCTCTGCCCTCTGAAATCCCTC  400

seq1  AACCCCAGAGACAAAAACACACAGAGACACACAAATACACACACAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGAGACAAAAACACACAGAGACACACAAATACACACACAAACAC  450

seq1  ATACACTGAGCCACACAGATATACAGATAAACGCACACGCACATACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGAGCCACACAGATATACAGATAAACGCACACGCACATACACAC  500

seq1  AAACTTTGTGACCTCAAGTTTCCTGAGATGAACCTTGGAGGCACTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGTGACCTCAAGTTTCCTGAGATGAACCTTGGAGGCACTGGGCT  550

seq1  CCACCTCCTCAGGATGTCAGTCTCTGAATAAACGTGGTTTCCTTCTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCTCAGGATGTCAGTCTCTGAATAAACGTGGTTTCCTTCTCATC  600

seq1  ATTTTCCTCTAGAAAAGGGCTGACATTCAGTGACAAGCAGTTGGACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCTAGAAAAGGGCTGACATTCAGTGACAAGCAGTTGGACATTG  650

seq1  GTTCAGTAACAGTGAGTTGTTGGGAGAAGGACTGAATTTTAAAAATCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTAACAGTGAGTTGTTGGGAGAAGGACTGAATTTTAAAAATCCAT  700

seq1  ATTTCTCTGAAGTCCACATTGTTAATTCTTGCTAGTTCCTGCCTTGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGAAGTCCACATTGTTAATTCTTGCTAGTTCCTGCCTTGCAGG  750

seq1  TCAGAGATGATTCCCCCATTGACACTGGCAGAAGGCTAAGGCAGTATATA  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAGAGATGATTCCCCCATTGACACTGGCAGAAGGCTAAAGCAGTATATA  800

seq1  GTTCAGTAGGTCACAAAATGTGATTCCTGGGTGTCAGCATCACTGGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTAGGTCACAAAATGTGATTCCTGGGTGTCAGCATCACTGGGAAA  850

seq1  ATGCCCATTCTTGGCTTCATCTAGAACTTTCTAAACTTCTAGGGGTTA-G  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCCCATTCTTGGCTTCATCTAGAACTTTCTAAACTTCTAGGGGTTAGG  900

seq1  GTCCATCTTAGGGACATA-GCACATGTATAGTATATACAAATCCAACATT  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCCATCTTAGGGACATAGGCACATGTATAGTATATACAAATCCAACATT  950

seq1  AAATCCCCAGAACAATAATTTTTT--AAAAAGATTTTCTT-GGGAGAAGT  995
      |||| |||||||||||||||||||  |||||||||||||| |||||||||
seq2  AAAT-CCCAGAACAATAATTTTTTTAAAAAAGATTTTCTTGGGGAGAAGT  999

seq1  TTGGAGTATAGCTTTTAACTTTCATCACGTTAGTTTTACCTACT-ATCAT  1044
      |||||||||||| |||||| |||||||||||||||||||||||| |||||
seq2  TTGGAGTATAGC-TTTAAC-TTCATCACGTTAGTTTTACCTACTAATCAT  1047

seq1  --AGAAGTTTTCAATTGAGCTGGG-CAGTGG-TGGCG-CACGCCTTTAGT  1089
        ||||||||   ||||||||||| |||||| ||||| |||||||| |||
seq2  AGAGAAGTTT--CATTGAGCTGGGCCAGTGGTTGGCGCCACGCCTTAAGT  1095

seq1  GCCAG-CACTTGGGAGGTAGAA--ACAGGC--GGATTTC--TGAATTCGA  1132
       |||| ||||||||||||||||  ||||||  | |||||   ||||||||
seq2  TCCAGCCACTTGGGAGGTAGAAATACAGGCCGGAATTTCCTGGAATTCGA  1145

seq1  GAGGCCA  1139
      |||||||
seq2  GAGGCCA  1152

seq1: chr2_155023954_155025132
seq2: B6Ng01-329G14.g_65_1246 (reverse)

seq1  ACAGTG---CAGGTG--AAGATA--GCTAGA-GTCAGGGTGGGAAT--CG  40
      ||||||   ||||||  ||||||  |||||| |||| |||||||||  ||
seq2  ACAGTGGCACAGGTGAAAAGATAAGGCTAGAGGTCA-GGTGGGAATTACG  49

seq1  AAGATAAGGGATGAGTATCAAGACTGCAAAGGTCTCATGAGTGAACTCAG  90
      |||||||  ||||||  ||||||||||||| |||||||||||||||||| 
seq2  AAGATAA--GATGAGATTCAAGACTGCAAA-GTCTCATGAGTGAACTCA-  95

seq1  GTGCCCTGGCTGTTTGAAGTGAGTTATTAAGTAG-ATGGGAGAACATTAG  139
      ||||||| |||||||| |||||||  |||||||| |||||||||||||||
seq2  GTGCCCT-GCTGTTTG-AGTGAGTATTTAAGTAGAATGGGAGAACATTAG  143

seq1  CCAATAATTCTGT-GATGATTCATTTGAATGTTGTTGATGACAATTTTAA  188
      || |||||||||| ||||| ||| ||||||||   |||||||||||||||
seq2  CC-ATAATTCTGTGGATGA-TCA-TTGAATGT--GTGATGACAATTTTAA  188

seq1  TGTATGTGTTTGTAGGATGTCCAGCTAGAGATCTCTAGTATACACCTG-A  237
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTATGTGTTTGTAGGATGTCCAGCTAGAGATCTCTAGTATACACCTGAA  238

seq1  AAATACAGGA-CCATGTATGTTTTCTGAAAGATTTATGGGTATTTTTAGT  286
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGGACCCATGTATGTTTTCTGAAAGATTTATGGGTATTTTTAGT  288

seq1  TTCTGTATTTGGTAAAAAGCAAGTC-TTTTTTTTTTTTTTTTTTGAAAGA  335
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTGTATTTGGTAAAAAGCAAGTCTTTTTTTTTTTTTTTTTTTGAAAGA  338

seq1  AAGGCGATTTTATTAAAAAGAAAAACAACAAAAGGGAGATGGGACCAGAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGATTTTATTAAAAAGAAAAACAACAAAAGGGAGATGGGACCAGAG  388

seq1  CACAGGTTAGTCCATCCACAGAGCACAGGTTAGTCCATCTGGGCC-TTCA  434
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAGGTTAGTCCATCCACAGAGCACAGGTTAGTCCATCTGGGCCTTTCA  438

seq1  GCGTCCTGGTGCTGATCTTGTCTTTCTCAATGACGTGGACGATGACGTCC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCTGGTGCTGATCTTGTCTTTCTCAATGACGTGGACGATGACGTCC  488

seq1  ATGCCCGACATGGCATCCCAGTCCACCGCGTTCAGCATGGCCTGAGAAAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGACATGGCATCCCAGTCCACCGCGTTCAGCATGGCCTGAGAAAT  538

seq1  AGTTTCAAACAGGTGTTCTGGATCCATGTTGGGCTCCCAGAGAGACTCAC  584
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTCAAACAGGTGTTCTGGATCCATGTTGGGCTCCCAGAGAGACTCAC  587

seq1  ACATCCCATACATTTGTTCAGAGCAGGTACCACTGACTACAAAGTCATCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCATACATTTGTTCAGAGCAGGTACCACTGACTACAAAGTCATCA  637

seq1  GTCACCATGGGACAGCCAGTGAGGTCCAGAGAGCAAATGAAGAGCTTGAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATGGGACAGCCAGTGAGGTCCAGAGAGCAAATGAAGAGCTTGAA  687

seq1  GGTCTTCGGGTCCAGGCCAGCAATGAAGCAATGACAGGCTCTGTGTAGTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCGGGTCCAGGCCAGCAATGAAGCAATGACAGGCTCTGTGTAGTA  737

seq1  GGGACCGAACCGCTTCTCATACAGGAGGTTGGCCACCATGCTCATGAGGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCGAACCGCTTCTCATACAGGAGGTTGGCCACCATGCTCATGAGGA  787

seq1  GGGTGTAAGGCTTGATCTGCCGACATTCTTTCACCTCATACAGGTTCAGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAAGGCTTGATCTGCCGACATTCTTTCACCTCATACAGGTTCAGT  837

seq1  CGGAACTTGAGACGTTGGGCAACTGTCTGGATGTCAGTGGCCCGGCCGGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTTGAGACGTTGGGCAACTGTCTGGATGTCAGTGGCCCGGCCGGA  887

seq1  CAGGCCTATGTAGAGCCTGTCACCCATGGGAAAGATCTTCTGGAAGTCCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTATGTAGAGCCTGTCACCCATGGGAAAGATCTTCTGGAAGTCCA  937

seq1  TGGTCACCATCTGGGTCTGGATCCCGAAATGCCTGTCTGCAGCCATGGCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCATCTGGGTCTGGATCCCGAAATGCCTGTCTGCAGCCATGGCC  987

seq1  ACACAGTTCTTTCCCTTCATGGCCATGACGGCCCCTTCATTATAGGACAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTCTTTCCCTTCATGGCCATGACGGCCCCTTCATTATAGGACAT  1037

seq1  AATAGTCATGATTGCGCTGGAGTGGAAGCCCGATCCCCCCGAAGCAAGTC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATGATTGCGCTGGAGTGGAAGCCCGATCCCCCCGAAGCAAGTC  1087

seq1  TTAATATCTTTTGTTTTCCTCTGTATTTTGTAGTCAGTTAAATGAAAAGC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTTTGTTTTCCTCTGTATTTTGTAGTCAGTTAAATGAAAAGC  1137

seq1  CCTTACCAGAAGGCTGGGAAATGAGATTCACAGTGGATGGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGAAGGCTGGGAAATGAGATTCACAGTGGATGGAATTC  1182