BAC Information

Click to search

BAC

Clone NameB6Ng01-330N01
Chromosome2 (Build37)
Map Location 155,479,553 - 155,590,055
singlet/doubletdoublet
Overlap geneTrpc4ap, Edem2, Procr
Upstream geneChmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b
Downstream geneMmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330N01.bB6Ng01-330N01.g
ACCGA117360GA117361
length1,047994
definitionB6Ng01-330N01.b B6Ng01-330N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,479,553 - 155,480,595)(155,589,241 - 155,590,055)
sequence
gaattcctgaccctctggcttctacctcccaagtgctaggaaaacagaca
tgcgctatcacatctcgctaagaaagactgctgtcaccgcagctagagct
ggctcagaggtttagagagtttgctttttcaggggactggggttcaattc
ccagcaccacatagtggccttcaactgtctgtgactccagttccagggga
caggatgccctcttctggcctccttggcaccaaacactcacgtggtacac
agacacacatgcaggaaaacacccatatacataaaatataaaaaataata
agtaaccaggcatggtggtacaaatctcagcactctggagacagagggtg
gcagatctctatgaattcaaggccagcctgatctacagagtgaattccag
gacagccagggctacatggtgaaactatattgaaaaaccaaaaaacaaat
aataaatatgaagccaaaataaaatagcaacaacttcagaaataagttca
atttttagatgtacaggacacttgactctaagtaagtgtatgtatgtgtg
tgtataaaatctttatggttttaatatgtgtatttgggtcaaagactaac
ttcttggtcatttttcatgaagatgctatccattcttataaacaaaagta
cctgtgttaaagggatgcagaggcttagttagcactgtgcttgcctcaca
agcaagaggagctgagtttgatccttagcacccataagaaaagttggctc
tcggcaagtctgtcttggggcttctatttctgtgattaaaaataaaacta
aaagcaaatggggggggggctggtttatttcatcttatacttcccaggtt
taacagttccatgactgacaaagtcaggacaggaacttgagcaaggtagg
atacctggaggcaggaactgaagcagagaccatgtaagagttgtttctac
cagctgctcagccatctttcattacactgacctggacttcagaccagagt
ggcacaacccacactgttctgggcccatctgtctatatcgaatcaag
gaattcaagcctccctctcccccttatgccctggccacacctatctaacc
tcaccagatctgcctttcccagcaggtcaaggaatgactcaaggcagaac
gttgaaacttggcttctttcacttggcataatggagtttttggccatttt
taaaagttggcacacaaagtgatgggcttgactctggcatttcccacatg
tctttatcctctactctggtttcttcctcttccccctttgccttccttgc
tcctcctgctctacttcctcctcttccaactgtcccctcctcccactcca
agccacatgcactccaataccctctcaccccacccctgtaaggatttatt
tatctttatgttatgtgcatgggtgttttgcttgcatgtacatctgtgtg
ccatgagcagcagagctagtggtggctgaatgagggagtctgaccttctg
aaactggagtaacagagatgtcagcacacatgatgtgtgtgctgggaacc
aaaacctggtcctctgcaagaacgatgctcttaaccactgagccacctct
ctaacctgccggcacttaaagattcctccttacttctctcatggtctcct
tttaagttctctctctctctctctttccctctgtatctgtctttctgtct
ctctctttctctgtctttctgtctctccctgtctctctttctctctgtct
gtatctctgtatctctgtctgtctgtctgtctctctcaagtatacacaca
cacttaaaatctagcttcttctgctcatgggagaaccacaagcatctgta
gttttgaatcttgtagccaccagtggccacgggttcctgggttcctgaaa
ggaaagctggggatggatgggaaagatggcgagagaaataacgaggcaag
acaaagttttctgatcaaggctcaatctttaattgtaagtcttgaattta
aaggggggagacccatccctcactttgccaggatctcatgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155479553_155480595
seq2: B6Ng01-330N01.b_46_1092

seq1  GAATTCCTGACCCTCTGGCTTCTACCTCCCAAGTGCTAGGAAAACAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACCCTCTGGCTTCTACCTCCCAAGTGCTAGGAAAACAGACA  50

seq1  TGCGCTATCACATCTCGCTAAGAAAGACTGCTGTCACCGCAGCTAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTATCACATCTCGCTAAGAAAGACTGCTGTCACCGCAGCTAGAGCT  100

seq1  GGCTCAGAGGTTTAGAGAGTTTGCTTTTTCAGGGGACTGGGGTTCAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGGTTTAGAGAGTTTGCTTTTTCAGGGGACTGGGGTTCAATTC  150

seq1  CCAGCACCACATAGTGGCCTTCAACTGTCTGTGACTCCAGTTCCAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCACATAGTGGCCTTCAACTGTCTGTGACTCCAGTTCCAGGGGA  200

seq1  CAGGATGCCCTCTTCTGGCCTCCTTGGCACCAAACACTCACGTGGTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCCCTCTTCTGGCCTCCTTGGCACCAAACACTCACGTGGTACAC  250

seq1  AGACACACATGCAGGAAAACACCCATATACATAAAATATAAAAAATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACATGCAGGAAAACACCCATATACATAAAATATAAAAAATAATA  300

seq1  AGTAACCAGGCATGGTGGTACAAATCTCAGCACTCTGGAGACAGAGGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCAGGCATGGTGGTACAAATCTCAGCACTCTGGAGACAGAGGGTG  350

seq1  GCAGATCTCTATGAATTCAAGGCCAGCCTGATCTACAGAGTGAATTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTCTATGAATTCAAGGCCAGCCTGATCTACAGAGTGAATTCCAG  400

seq1  GACAGCCAGGGCTACATGGTGAAACTATATTGAAAAACCAAAAAACAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTACATGGTGAAACTATATTGAAAAACCAAAAAACAAAT  450

seq1  AATAAATATGAAGCCAAAATAAAATAGCAACAACTTCAGAAATAAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATGAAGCCAAAATAAAATAGCAACAACTTCAGAAATAAGTTCA  500

seq1  ATTTTTAGATGTACAGGACACTTGACTCTAAGTAAGTGTATGTATGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGATGTACAGGACACTTGACTCTAAGTAAGTGTATGTATGTGTG  550

seq1  TGTATAAAATCTTTATGGTTTTAATATGTGTATTTGGGTCAAAGACTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAATCTTTATGGTTTTAATATGTGTATTTGGGTCAAAGACTAAC  600

seq1  TTCTTGGTCATTTTTCATGAAGATGCTATCCATTCTTATAAACAAAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCATTTTTCATGAAGATGCTATCCATTCTTATAAACAAAAGTA  650

seq1  CCTGTGTTAAAGGGATGCAGAGGCTTAGTTAGCACTGTGCTTGCCTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTAAAGGGATGCAGAGGCTTAGTTAGCACTGTGCTTGCCTCACA  700

seq1  AGCAAGAGGAGCTGAGTTTGATCCTTAGCACCCATAAGAAAAGTTGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGAGCTGAGTTTGATCCTTAGCACCCATAAGAAAAGTTGGCTC  750

seq1  TCGGCAAGTCTGTCTTGGGGCTTCTATTTCTGTGATTAAAAATAAAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAAGTCTGTCTTGGGGCTTCTATTTCTGTGATTAAAAATAAAACTA  800

seq1  AAAGCAAAT-GGGGGGGGGCTGGTTTATTTCATCTTATACTT-CCAGG-T  847
      ||||||||| |||||||||||||||||||||||||||||||| ||||| |
seq2  AAAGCAAATGGGGGGGGGGCTGGTTTATTTCATCTTATACTTCCCAGGTT  850

seq1  TAACAG-TCCATGACTGACAAAGTCAGGACAGGAACTTGAGCAAGGTAGG  896
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTCCATGACTGACAAAGTCAGGACAGGAACTTGAGCAAGGTAGG  900

seq1  A-ACCTGGAGGCAGGAACTGAAGCAGAGACCATGGAAGAG-TGTTTGTAC  944
      | |||||||||||||||||||||||||||||||| ||||| ||||| |||
seq2  ATACCTGGAGGCAGGAACTGAAGCAGAGACCATGTAAGAGTTGTTTCTAC  950

seq1  TAGCTTGCTCAGCCATCTTTC-TTACACTGACCTGGACTTCAGGCCCAGA  993
       ||| |||||||||||||||| |||||||||||||||||||| | |||||
seq2  CAGC-TGCTCAGCCATCTTTCATTACACTGACCTGGACTTCA-GACCAGA  998

seq1  GGTGGCACCACCCACACTGTTCTGGGCCATTCTGTCAATTACCAATCAAG  1043
       ||||||| |||||||||||||||||||  |||||| ||  | |||||||
seq2  -GTGGCACAACCCACACTGTTCTGGGCCCATCTGTCTATATCGAATCAAG  1047

seq1: chr2_155589241_155590055
seq2: B6Ng01-330N01.g_68_881 (reverse)

seq1  ACAAGATTCAAAACTACAGATGCTTTGTGGTTCTCCCATGAGCAGAAGAA  50
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAAGATTCAAAACTACAGATGC-TTGTGGTTCTCCCATGAGCAGAAGAA  49

seq1  GCTAGATTTTAAGTGTGTGTGTATACTTGAGAGAGACAGACAGACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATTTTAAGTGTGTGTGTATACTTGAGAGAGACAGACAGACAGACA  99

seq1  GAGATACAGAGATACAGACAGAGAGAAAGAGAGACAGGGAGAGACAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAGAGATACAGACAGAGAGAAAGAGAGACAGGGAGAGACAGAAA  149

seq1  GACAGAGAAAGAGAGAGACAGAAAGACAGATACAGAGGGAAAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAAGAGAGAGACAGAAAGACAGATACAGAGGGAAAGAGAGAGA  199

seq1  GAGAGAGAACTTAAAAGGAGACCATGAGAGAAGTAAGGAGGAATCTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAACTTAAAAGGAGACCATGAGAGAAGTAAGGAGGAATCTTTAA  249

seq1  GTGCCGGCAGGTTAGAGAGGTGGCTCAGTGGTTAAGAGCATCGTTCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGGCAGGTTAGAGAGGTGGCTCAGTGGTTAAGAGCATCGTTCTTGC  299

seq1  AGAGGACCAGGTTTTGGTTCCCAGCACACACATCATGTGTGCTGACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCAGGTTTTGGTTCCCAGCACACACATCATGTGTGCTGACATCT  349

seq1  CTGTTACTCCAGTTTCAGAAGGTCAGACTCCCTCATTCAGCCACCACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTCCAGTTTCAGAAGGTCAGACTCCCTCATTCAGCCACCACTAG  399

seq1  CTCTGCTGCTCATGGCACACAGATGTACATGCAAGCAAAACACCCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCTCATGGCACACAGATGTACATGCAAGCAAAACACCCATGCA  449

seq1  CATAACATAAAGATAAATAAATCCTTACAGGGGTGGGGTGAGAGGGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATAAAGATAAATAAATCCTTACAGGGGTGGGGTGAGAGGGTATT  499

seq1  GGAGTGCATGTGGCTTGGAGTGGGAGGAGGGGACAGTTGGAAGAGGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCATGTGGCTTGGAGTGGGAGGAGGGGACAGTTGGAAGAGGAGGA  549

seq1  AGTAGAGCAGGAGGAGCAAGGAAGGCAAAGGGGGAAGAGGAAGAAACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCAGGAGGAGCAAGGAAGGCAAAGGGGGAAGAGGAAGAAACCAG  599

seq1  AGTAGAGGATAAAGACATGTGGGAAATGCCAGAGTCAAGCCCATCACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGATAAAGACATGTGGGAAATGCCAGAGTCAAGCCCATCACTTT  649

seq1  GTGTGCCAACTTTTAAAAATGGCCAAAAACTCCATTATGCCAAGTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAACTTTTAAAAATGGCCAAAAACTCCATTATGCCAAGTGAAAG  699

seq1  AAGCCAAGTTTCAACGTTCTGCCTTGAGTCATTCCTTGACCTGCTGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGTTTCAACGTTCTGCCTTGAGTCATTCCTTGACCTGCTGGGAA  749

seq1  AGGCAGATCTGGTGAGGTTAGATAGGTGTGGCCAGGGCATAAGGGGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATCTGGTGAGGTTAGATAGGTGTGGCCAGGGCATAAGGGGGAGA  799

seq1  GGGAGGCTTGAATTC  815
      |||||||||||||||
seq2  GGGAGGCTTGAATTC  814