BAC Information

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BAC

Clone NameB6Ng01-331B15
Chromosome2 (Build37)
Map Location 91,224,532 - 91,387,053
singlet/doubletdoublet
Overlap gene1110051M20Rik, Lrp4, LOC619941, Ckap5
Upstream geneGA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289
Downstream geneF2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331B15.bB6Ng01-331B15.g
ACCGA117563GA117564
length1,181986
definitionB6Ng01-331B15.b B6Ng01-331B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,385,869 - 91,387,053)(91,224,532 - 91,225,515)
sequence
gaattcctgattctcttgcctcctcatccctagtactggcattacaggag
tgcactgccacacttagatagaaaacacctatttctagccaggcagtagt
agcacatacctttaatcccaggacttgggaggcagaagcagacggatttc
tgagttcgaggacagcctggtctccaggacagccagagctatacagagaa
accctgtcttgaacaacaacaaaaaaagacacctatttctaataacgtaa
aataatgttcttagcaagacatcagtgttttttaaactgccaatgttttt
cacattctaagtaagatatactatagtataagtaaacagaataagtataa
ataataagtatataatattaaatatatcaaatatacattaaacataagta
taaatagtataagtaaagtatattataaatattataactgctgataaaac
aagttaatgacaataatatttaagttcttaccttgtgttcacatttctga
tcaactggtaatttcaaccactcactgtcatctcccattgtgcttctagt
tttctcttggagttaaaagtagttcctagtcagataaaagtaggtaatag
atactcattaacactagtaaccaaattgtctcttatgacaaaaatgactt
ttctttagttatttcatcatgcatgtataaataagagttaaaaagtccat
tcttgccaggcagtggtggtgcacacctttaatcccagcacttgggaggc
agaggcaggtggatttcagagttcaaggccagcctgacctacagagtgag
ttccaggacagccagggctacacagagaaaccctgtctcaaaaacaaaca
aacaaacaaagacaccaaaaaaccaaaaaggtccattctttgatcaaatg
cctactacttaattccattccgtttgtttgtttgtttgagacagggtctc
actatggttctggctgtcctcaaattcacagattgcctgtcttggctttc
cttatgtggtaaaattaaaggtgtgtgccacaactaaggtattaggatta
cttattagaaaatgggaggtggaggccagagatcatacttccacatcagt
ctcaccttacattagtgagtttgaagaccaggcctgggtttacattaaga
cctgttctcgaaggagcattttttttaagag
gaattccaaaggaacactagagacaaattaaaacaggggtagaaagtggt
ccccagatgagaatacgaagcaaagccccagggtccatgtgagtcactgt
ttaaactaagccagagacaggaggaaaaaatgtattctgttgcctttggg
ttttcctgccaaagaaatagaagccgtacagcccagtgtaatctgaaaat
ggagagcccataggagtataggcaatcatccagtaatcatcaccaccgag
gcagctttcagactccagaaaactctgacagaagaatgtcaagggaaaaa
catgtccatttttgtagcaacacagacactaaactgaaggtggcaagcaa
agaggggacatgattaattccaaattccagttttcatttggtgaccacat
aaaaggagggcatgggtcactgagctgaacaggtaaacatctcaagaacc
atctaatgcatcccctctcaccgatgagtccactcagggaggctgtctac
ggcctttaacagagtatgttaccgttttggataaagtcagccttcctaat
attaacagtgctgcaaagaaacagcagattaaatactattctcatagaaa
actaccatagaaattaacttttaatgcactacagggtcgctgggaacata
tggcaatatgtggtgttagagacctttaaagttatgaaagggttaacctg
gccatgaagtttatagcaatgtcattgtcatcatacagaaggagaatgaa
aaatacagctaatgagccaacatagggaaatggggcagactacatttcta
gcaactggagtctaaatgatgatgtatcctaaatttataagctgtcctgc
aaaaaaatgggccccaatgtgtgttttatattcagggcagaatgtcagcg
tctaggccatgaaatacactgtgaaggaactaatgatggtgaaatcatat
ccttagtacaggatatccctcccccttctgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91385869_91387053
seq2: B6Ng01-331B15.b_51_1231 (reverse)

seq1  CTCTTTAAAAAAAAAATGTTCTTTTTGAG-ACAGTGTCTT-ATGT-AACC  47
      |||||   |||||||||| ||  || ||| |||| ||||| |||| ||||
seq2  CTCTT---AAAAAAAATGCTC-CTTCGAGAACAG-GTCTTAATGTAAACC  45

seq1  CAGGC--TGCCCTCAAACTCACTAAATGT-AGGTGAGACTGATGTTGAAG  94
      |||||   | | ||||||||||| ||||| ||||||||||||||| ||||
seq2  CAGGCCTGGTCTTCAAACTCACT-AATGTAAGGTGAGACTGATGTGGAAG  94

seq1  TATTGATCCTTCT-GCCTCCACCTCCCATTTTTTCTAATTAAGTTATCCT  143
      || |||||  ||| ||||||||||||||  |||||||| ||||| |||||
seq2  TA-TGATC--TCTGGCCTCCACCTCCCA--TTTTCTAA-TAAGTAATCCT  138

seq1  ATTACC-TAGTTGTGGCACACACCTTTAATTTTACCACATA--GGAAGCC  190
      | |||| ||||||||||||||||||||||||||||||||||  | |||||
seq2  AATACCTTAGTTGTGGCACACACCTTTAATTTTACCACATAAGGAAAGCC  188

seq1  AAGACAGGCAAATCTGTGAATTTGAGGACAGCCAGAACCATAGTGAGACC  240
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGC-AATCTGTGAATTTGAGGACAGCCAGAACCATAGTGAGACC  237

seq1  CTGTCTCAAAACAAACAAACAAACGGAATGGAATTAAGTAGTAGGCATTT  290
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTC-AAACAAACAAACAAACGGAATGGAATTAAGTAGTAGGCATTT  286

seq1  GATCAAAGAATGGACCTTTTTGGTTTTTTGGTGTCTTTGTTTGTTTGTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGAATGGACCTTTTTGGTTTTTTGGTGTCTTTGTTTGTTTGTTT  336

seq1  GTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC  386

seq1  TCTGTAGGTCAGGCTGGCCTTGAACTCTGAAATCCACCTGCCTCTGCCTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTCAGGCTGGCCTTGAACTCTGAAATCCACCTGCCTCTGCCTC  436

seq1  CCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGCAAGAATGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGGATTAAAGGTGTGCACCACCACTGCCTGGCAAGAATGGA  486

seq1  CTTTTTAACTCTTATTTATACATGCATGATGAAATAACTAAAGAAAAGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAACTCTTATTTATACATGCATGATGAAATAACTAAAGAAAAGTC  536

seq1  ATTTTTGTCATAAGAGACAATTTGGTTACTAGTGTTAATGAGTATCTATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTCATAAGAGACAATTTGGTTACTAGTGTTAATGAGTATCTATT  586

seq1  ACCTACTTTTATCTGACTAGGAACTACTTTTAACTCCAAGAGAAAACTAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTTTATCTGACTAGGAACTACTTTTAACTCCAAGAGAAAACTAG  636

seq1  AAGCACAATGGGAGATGACAGTGAGTGGTTGAAATTACCAGTTGATCAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAATGGGAGATGACAGTGAGTGGTTGAAATTACCAGTTGATCAGA  686

seq1  AATGTGAACACAAGGTAAGAACTTAAATATTATTGTCATTAACTTGTTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACACAAGGTAAGAACTTAAATATTATTGTCATTAACTTGTTTT  736

seq1  ATCAGCAGTTATAATATTTATAATATACTTTACTTATACTATTTATACTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGTTATAATATTTATAATATACTTTACTTATACTATTTATACTT  786

seq1  ATGTTTAATGTATATTTGATATATTTAATATTATATACTTATTATTTATA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAATGTATATTTGATATATTTAATATTATATACTTATTATTTATA  836

seq1  CTTATTCTGTTTACTTATACTATAGTATATCTTACTTAGAATGTGAAAAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTGTTTACTTATACTATAGTATATCTTACTTAGAATGTGAAAAA  886

seq1  CATTGGCAGTTTAAAAAACACTGATGTCTTGCTAAGAACATTATTTTACG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCAGTTTAAAAAACACTGATGTCTTGCTAAGAACATTATTTTACG  936

seq1  TTATTAGAAATAGGTGTCTTTTTTTGTTGTTGTTCAAGACAGGGTTTCTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAAATAGGTGTCTTTTTTTGTTGTTGTTCAAGACAGGGTTTCTC  986

seq1  TGTATAGCTCTGGCTGTCCTGGAGACCAGGCTGTCCTCGAACTCAGAAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCTCTGGCTGTCCTGGAGACCAGGCTGTCCTCGAACTCAGAAAT  1036

seq1  CCGTCTGCTTCTGCCTCCCAAGTCCTGGGATTAAAGGTATGTGCTACTAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGCTTCTGCCTCCCAAGTCCTGGGATTAAAGGTATGTGCTACTAC  1086

seq1  TGCCTGGCTAGAAATAGGTGTTTTCTATCTAAGTGTGGCAGTGCACTCCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTAGAAATAGGTGTTTTCTATCTAAGTGTGGCAGTGCACTCCT  1136

seq1  GTAATGCCAGTACTAGGGATGAGGAGGCAAGAGAATCAGGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCCAGTACTAGGGATGAGGAGGCAAGAGAATCAGGAATTC  1181

seq1: chr2_91224532_91225515
seq2: B6Ng01-331B15.g_67_1052

seq1  GAATTCCAAAGGAACACTAGAGACAAATTAAAACAGGGGTAGAAAGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGAACACTAGAGACAAATTAAAACAGGGGTAGAAAGTGGT  50

seq1  CCCCAGATGAGAATACGAAGCAAAGCCCCAGGGTCCATGTGAGTCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATGAGAATACGAAGCAAAGCCCCAGGGTCCATGTGAGTCACTGT  100

seq1  TTAAACTAAGCCAGAGACAGGAGGAAAAAATGTATTCTGTTGCCTTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAAGCCAGAGACAGGAGGAAAAAATGTATTCTGTTGCCTTTGGG  150

seq1  TTTTCCTGCCAAAGAAATAGAAGCCGTACAGCCCAGTGTAATCTGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGCCAAAGAAATAGAAGCCGTACAGCCCAGTGTAATCTGAAAAT  200

seq1  GGAGAGCCCATAGGAGTATAGGCAATCATCCAGTAATCATCACCACCGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCCATAGGAGTATAGGCAATCATCCAGTAATCATCACCACCGAG  250

seq1  GCAGCTTTCAGACTCCAGAAAACTCTGACAGAAGAATGTCAAGGGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTCAGACTCCAGAAAACTCTGACAGAAGAATGTCAAGGGAAAAA  300

seq1  CATGTCCATTTTTGTAGCAACACAGACACTAAACTGAAGGTGGCAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATTTTTGTAGCAACACAGACACTAAACTGAAGGTGGCAAGCAA  350

seq1  AGAGGGGACATGATTAATTCCAAATTCCAGTTTTCATTTGGTGACCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGACATGATTAATTCCAAATTCCAGTTTTCATTTGGTGACCACAT  400

seq1  AAAAGGAGGGCATGGGTCACTGAGCTGAACAGGTAAACATCTCAAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGGCATGGGTCACTGAGCTGAACAGGTAAACATCTCAAGAACC  450

seq1  ATCTAATGCATCCCCTCTCACCGATGAGTCCACTCAGGGAGGCTGTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGCATCCCCTCTCACCGATGAGTCCACTCAGGGAGGCTGTCTAC  500

seq1  GGCCTTTAACAGAGTATGTTACCGTTTTGGATAAAGTCAGCCTTCCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAACAGAGTATGTTACCGTTTTGGATAAAGTCAGCCTTCCTAAT  550

seq1  ATTAACAGTGCTGCAAAGAAACAGCAGATTAAATACTATTCTCATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAGTGCTGCAAAGAAACAGCAGATTAAATACTATTCTCATAGAAA  600

seq1  ACTACCATAGAAATTAACTTTTAATGCACTACAGGGTCGCTGGGAACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCATAGAAATTAACTTTTAATGCACTACAGGGTCGCTGGGAACATA  650

seq1  TGGCAATATGTGGTGTTAGAGACCTTTAAAGTTATGAAAGGGTTAACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATATGTGGTGTTAGAGACCTTTAAAGTTATGAAAGGGTTAACCTG  700

seq1  GCCATGAAGTTTATAGCAATGTCATTGTCATCATACAGAAGGAGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAGTTTATAGCAATGTCATTGTCATCATACAGAAGGAGAATGAA  750

seq1  AAATACAGCTAATGAGCCAACATAGGGAAATGGGGCAGACTACATTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGCTAATGAGCCAACATAGGGAAATGGGGCAGACTACATTTCTA  800

seq1  GCAACTGGAGTCTAAATGATGATGTATCCTAAATTTATAAGCTGTCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGAGTCTAAATGATGATGTATCCTAAATTTATAAGCTGTCCTGC  850

seq1  AAAAAAAT-GGCCCCAATGTGTGTTTTATATTCAGGGCAGAATGTCAGCG  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGGGCCCCAATGTGTGTTTTATATTCAGGGCAGAATGTCAGCG  900

seq1  TCTAGGCCATGAAATACACTGTGAAGGAACTAATGATGGTGAAATCATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCATGAAATACACTGTGAAGGAACTAATGATGGTGAAATCATAT  950

seq1  CCTTAGTACAGGATATCCCTCCCCC-TCTGTGTGTG  984
      ||||||||||||||||||||||||| ||||||||||
seq2  CCTTAGTACAGGATATCCCTCCCCCTTCTGTGTGTG  986