BAC Information

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BAC

Clone NameB6Ng01-331F13
Chromosome2 (Build37)
Map Location 78,836,669 - 78,989,963
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331F13.bB6Ng01-331F13.g
ACCGA117736GA117737
length1,1081,115
definitionB6Ng01-331F13.b B6Ng01-331F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,836,669 - 78,837,787)(78,988,857 - 78,989,963)
sequence
gaattctaaatcctcaatttctacttaattagctcttccaaattttttac
tgcttatgacatgaaaagaaatggaaccttaagcagatcaaataattata
ttgtataattttctagcttcctcactgatcttcagaaaactaatgggaag
atatgataattttgatctctatagaaagtgaagtggatggagaaaaacag
aatgatagattcctggaagaaaaaaaaaaaagccatgggttttcgcccag
ccttgcagcgaggagtgcgcaggcacagactgctcaagtttctcgggtaa
ttactgagggcttctaaagaagcaaaaggttcatttgagaaactcacttg
aagatcattaattaaacccatgaggtggttttacttttcatcggaagtca
ttcgtgatgagcagattattattccaaatctacagtgaaggagtggcgta
gaaaggataaatatacagatgggtgaactaaaaatggaagagacaaaata
aatgatagcttttcctcagctgaaacaacaagcgactatataagaagtta
attaataatgaaaattacagggcagtcgtaaactagggaaaagaaactcc
ttgaatatttgaagtgttcgccatcagctccaccctgtgacccgtacccc
acacggcttgctgatgtcaaatgctttatcatccctcttagacataatgt
ctggcccttgggaagaaaagctgactgtcattcttcctggttcaactcta
agccaaacacagcagaattctaagatatcaaaactgtttaacttgaattc
caagttgtcctcagccataacccaacaaggacatacaggtcttggcatct
taggatctttattacttgtgattgttgtgggaattcttccatttgggggg
tgtgattcttctttcttcttctttcttactttctttcttctttcttcttc
tttctttctcatttattttctaaatctctggtgagagttctttaggaacc
acagcgtgaacatgtgactaattttatcttcaccggacttacaccttttt
ctttgagccattatgtcatttccacacctataacttaaactgcatcgttt
ccaatacc

gaattctttgcttgaggaaagggaggagaaatgcatgatgacaaagcccg
gggagccatagctttccttgactctgatatttattccctttttctgtgtg
atgtgggtgtgtgctggaggatgggggctgtagtacagtccatgtggaag
ccagagtttggcatcagggtttatatctctgatccctttcaatattactc
tttgaaacacaacctcttcctgaaccttagcttactgttttaactagact
gactggctggtgagcctctggattctgcctgtccacacctccctgcccac
ttcccccgacagaaacacacacgcaaactcaagcagatatacacataaac
acatataaagtgtgtgtatgtgcagggtgtctatgactgcagccatacat
ttgcaagtcatctatatgtggtggcatttggaacttttgacaggatgttc
caaaaagaggagaaaagaacttcagaatcaagaaagttgaggactatgaa
ggaaggaggcagagtacaaaggaccaggaagtagctacatagcggtagga
ggaaaagtggggcaggcatttggccaacatccaggcacatgataaatggg
gacagctggtactgcaaattcattctagaggaaagctaaggagtggagat
ggaccaagcactgaagagaaactgtgtggtgaaagaggcaagggtgcttt
tgtggatggaatttgaagattattaaaagctactaagaattacttgaaga
gaaaaatgataaaagaagggataaatggcatgattatcccaataacgtgg
gagaccgtgagatcacaggcacagctgtttagcttctgaagtttataaca
gagaatgcaacacacggggagcttttctaaaagaagttaatagatgatat
atttcagttcaaacttcataactcaaaatgactaggaaacagttatccaa
taataagtgtaaaataaaaataaaggaaatgggagatattataacttaaa
aggaccaaagttcacagacagaaatggaggggcgagatcttgtcggaaat
gtaaacaaataggatgtactgacctattatttctggaaacttggccgaga
ggattctttttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78836669_78837787
seq2: B6Ng01-331F13.b_50_1157

seq1  GAATTCTAAATCCTCAATTTCTACTTAATTAGCTCTTCCAAATTTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATCCTCAATTTCTACTTAATTAGCTCTTCCAAATTTTTTAC  50

seq1  TGCTTATGACATGAAAAGAAATGGAACCTTAAGCAGATCAAATAATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGACATGAAAAGAAATGGAACCTTAAGCAGATCAAATAATTATA  100

seq1  TTGTATAATTTTCTAGCTTCCTCACTGATCTTCAGAAAACTAATGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAATTTTCTAGCTTCCTCACTGATCTTCAGAAAACTAATGGGAAG  150

seq1  ATATGATAATTTTGATCTCTATAGAAAGTGAAGTGGATGGAGAAAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATAATTTTGATCTCTATAGAAAGTGAAGTGGATGGAGAAAAACAG  200

seq1  AATGATAGATTCCTGGAAGAAAAAAAAAAAAGCCATGGGTTTTCGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGATTCCTGGAAGAAAAAAAAAAAAGCCATGGGTTTTCGCCCAG  250

seq1  CCTTGCAGCGAGGAGTGCGCAGGCACAGACTGCTCAAGTTTCTCGGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGCGAGGAGTGCGCAGGCACAGACTGCTCAAGTTTCTCGGGTAA  300

seq1  TTACTGAGGGCTTCTAAAGAAGCAAAAGGTTCATTTGAGAAACTCACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGGGCTTCTAAAGAAGCAAAAGGTTCATTTGAGAAACTCACTTG  350

seq1  AAGATCATTAATTAAACCCATGAGGTGGTTTTACTTTTCATCGGAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATTAATTAAACCCATGAGGTGGTTTTACTTTTCATCGGAAGTCA  400

seq1  TTCGTGATGAGCAGATTATTATTCCAAATCTACAGTGAAGGAGTGGCGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGATGAGCAGATTATTATTCCAAATCTACAGTGAAGGAGTGGCGTA  450

seq1  GAAAGGATAAATATACAGATGGGTGAACTAAAAATGGAAGAGACAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATAAATATACAGATGGGTGAACTAAAAATGGAAGAGACAAAATA  500

seq1  AATGATAGCTTTTCCTCAGCTGAAACAACAAGCGACTATATAAGAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGCTTTTCCTCAGCTGAAACAACAAGCGACTATATAAGAAGTTA  550

seq1  ATTAATAATGAAAATTACAGGGCAGTCGTAAACTAGGGAAAAGAAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATGAAAATTACAGGGCAGTCGTAAACTAGGGAAAAGAAACTCC  600

seq1  TTGAATATTTGAAGTGTTCGCCATCAGCTCCACCCTGTGACCCGTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATTTGAAGTGTTCGCCATCAGCTCCACCCTGTGACCCGTACCCC  650

seq1  ACACGGCTTGCTGATGTCAAATGCTTTATCATCCCTCTTAGACATAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCTTGCTGATGTCAAATGCTTTATCATCCCTCTTAGACATAATGT  700

seq1  CTGGCCCTTGGGAAGAAAAGCTGACTGTCATTCTTCCTGGTTCAACTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTTGGGAAGAAAAGCTGACTGTCATTCTTCCTGGTTCAACTCTA  750

seq1  AGCCAAACACAGCAGAATTCTAAGATATCAAAACTGTTTAACTTGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACACAGCAGAATTCTAAGATATCAAAACTGTTTAACTTGAATTC  800

seq1  CAAGTTGTCCTCAGCCATAACCCAACAAGGACATACAGGTCTTGGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTCCTCAGCCATAACCCAACAAGGACATACAGGTCTTGGCATCT  850

seq1  TAGGATCTTTATTACTTGTGATTGTTGTGGGAATTCTTCCATTT-GGGGG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGGATCTTTATTACTTGTGATTGTTGTGGGAATTCTTCCATTTGGGGGG  900

seq1  TGTGATTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  949
      |||||||| |||||||||   ||||||||| ||||||||| |||||||||
seq2  TGTGATTC-TTCTTTCTT--CTTCTTTCTTACTTTCTTTC-TTCTTTCTT  946

seq1  TCTTTCTTTCTTTCTTCATTTTATTTTCTTAATCTTCTTGGTGAGAGTTC  999
         ||||||||||| ||| |||||||||| |||||   ||||||||||||
seq2  --CTTCTTTCTTTC-TCA-TTTATTTTCTAAATCT--CTGGTGAGAGTTC  990

seq1  TTTTAGGAACCACAGCCGTGAACATGTGACTAA-TTTATCTTTCACCGGA  1048
       |||||||||||||| ||||||||||||||||| |||||| |||||||||
seq2  -TTTAGGAACCACAG-CGTGAACATGTGACTAATTTTATC-TTCACCGGA  1037

seq1  CTTTACACCTTTTTCTTTGAGCATTTATGTTCCATT--CACACCTATTAC  1096
      | ||||||||||||||||||||  ||||||  ||||  ||||||||| ||
seq2  C-TTACACCTTTTTCTTTGAGCCATTATGT--CATTTCCACACCTATAAC  1084

seq1  -TAAACTGCATCTTTTCCCATACC  1119
       ||||||||||| ||||| |||||
seq2  TTAAACTGCATCGTTTCCAATACC  1108


seq1: chr2_78988857_78989963
seq2: B6Ng01-331F13.g_66_1180 (reverse)

seq1  TTTCAAAAAGAATCTCTTTTGGCCAAGTTT-CAGAAATAATA-GTCAGTA  48
      |||||||||||||| || | |||||||||| ||||||||||| |||||||
seq2  TTTCAAAAAGAATC-CTCTCGGCCAAGTTTCCAGAAATAATAGGTCAGTA  49

seq1  CATCTTATTTGTTTACATTTTCGAC-AGATCTCGCCC--TCATTTCTGTC  95
      |||| ||||||||||||||| |||| |||||||||||   ||||||||||
seq2  CATCCTATTTGTTTACATTTCCGACAAGATCTCGCCCCTCCATTTCTGTC  99

seq1  TGTG-ACTTTTGT-CTTTTAAGTTTATTATATCT-CCATTT-CTTTA-TT  140
      |||| ||||| || |||||||| |||| |||||| |||||| ||||| ||
seq2  TGTGAACTTTGGTCCTTTTAAG-TTATAATATCTCCCATTTCCTTTATTT  148

seq1  TTATTTTACACTTATTATTGGATAACTGTTTTCTAGTCATTTTGAGTTAT  190
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTATTTTACACTTATTATTGGATAACTGTTTCCTAGTCATTTTGAGTTAT  198

seq1  GAAGTTTGAACTGAAATATATCATCTATTAACTTCTTTTAGAAAAGCT-C  239
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAGTTTGAACTGAAATATATCATCTATTAACTTCTTTTAGAAAAGCTCC  248

seq1  CCGTGTGTTTGCATTCTCTGTTATAAACTTCAGAAGCTAAACAGCTGTGC  289
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTG-TTGCATTCTCTGTTATAAACTTCAGAAGCTAAACAGCTGTGC  297

seq1  CTGTGATCTCACGGTCTCCCACGTTATTGGGATAATCATGCCATTTATCC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTCACGGTCTCCCACGTTATTGGGATAATCATGCCATTTATCC  347

seq1  CTTCTTTTATCATTTTTCTCTTCAAGTAATTCTTAGTAGCTTTTAATAAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTATCATTTTTCTCTTCAAGTAATTCTTAGTAGCTTTTAATAAT  397

seq1  CTTCAAATTCCATCCACAAAAGCACCCTTGCCTCTTTCACCACACAGTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTCCATCCACAAAAGCACCCTTGCCTCTTTCACCACACAGTTT  447

seq1  CTCTTCAGTGCTTGGTCCATCTCCACTCCTTAGCTTTCCTCTAGAATGAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTGCTTGGTCCATCTCCACTCCTTAGCTTTCCTCTAGAATGAA  497

seq1  TTTGCAGTACCAGCTGTCCCCATTTATCATGTGCCTGGATGTTGGCCAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTACCAGCTGTCCCCATTTATCATGTGCCTGGATGTTGGCCAAA  547

seq1  TGCCTGCCCCACTTTTCCTCCTACCGCTATGTAGCTACTTCCTGGTCCTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCCACTTTTCCTCCTACCGCTATGTAGCTACTTCCTGGTCCTT  597

seq1  TGTACTCTGCCTCCTTCCTTCATAGTCCTCAACTTTCTTGATTCTGAAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTGCCTCCTTCCTTCATAGTCCTCAACTTTCTTGATTCTGAAGT  647

seq1  TCTTTTCTCCTCTTTTTGGAACATCCTGTCAAAAGTTCCAAATGCCACCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCCTCTTTTTGGAACATCCTGTCAAAAGTTCCAAATGCCACCA  697

seq1  CATATAGATGACTTGCAAATGTATGGCTGCAGTCATAGACACCCTGCACA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGATGACTTGCAAATGTATGGCTGCAGTCATAGACACCCTGCACA  747

seq1  TACACACACTTTATATGTGTTTATGTGTATATCTGCTTGAGTTTGCGTGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACTTTATATGTGTTTATGTGTATATCTGCTTGAGTTTGCGTGT  797

seq1  GTGTTTCTGTCGGGGGAAGTGGGCAGGGAGGTGTGGACAGGCAGAATCCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGTCGGGGGAAGTGGGCAGGGAGGTGTGGACAGGCAGAATCCA  847

seq1  GAGGCTCACCAGCCAGTCAGTCTAGTTAAAACAGTAAGCTAAGGTTCAGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCACCAGCCAGTCAGTCTAGTTAAAACAGTAAGCTAAGGTTCAGG  897

seq1  AAGAGGTTGTGTTTCAAAGAGTAATATTGAAAGGGATCAGAGATATAAAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGTGTTTCAAAGAGTAATATTGAAAGGGATCAGAGATATAAAC  947

seq1  CCTGATGCCAAACTCTGGCTTCCACATGGACTGTACTACAGCCCCCATCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCCAAACTCTGGCTTCCACATGGACTGTACTACAGCCCCCATCC  997

seq1  TCCAGCACACACCCACATCACACAGAAAAAGGGAATAAATATCAGAGTCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACACACCCACATCACACAGAAAAAGGGAATAAATATCAGAGTCA  1047

seq1  AGGAAAGCTATGGCTCCCCGGGCTTTGTCATCATGCATTTCTCCTCCCTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTATGGCTCCCCGGGCTTTGTCATCATGCATTTCTCCTCCCTT  1097

seq1  TCCTCAAGCAAAGAATTC  1107
      ||||||||||||||||||
seq2  TCCTCAAGCAAAGAATTC  1115


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