BAC Information

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BAC

Clone NameB6Ng01-331H13
Chromosome2 (Build37)
Map Location 123,839,273 - 123,999,677
singlet/doubletdoublet
Overlap gene4930517E11Rik
Upstream genenone
Downstream geneLOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331H13.bB6Ng01-331H13.g
ACCGA117828GA117829
length8151,023
definitionB6Ng01-331H13.b B6Ng01-331H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,839,273 - 123,840,086)(123,998,658 - 123,999,677)
sequence
gaattctcaaatttggataaggttgtaagtggattttttttctgcaatat
acctcataagccaggatggtgtattcaaagagcaaaaataaaaatggtca
agaatgttatacattaggggatcctataaacactgtcctttagtgaggag
gagacaaaaccttagcaaaatagaaactcatcaacattaggacttcaaaa
acaaggaaataaatttctccaaattaaaaataggaaagatcgtcattaaa
atatatataacaaaaaatataagttactgccaaagaaaacaatttcaaca
aatacaaagccgtgtaacactgtagtagacacaggtaaacaacttatgtc
aaaggagtcatcaaagattggttattgaagttaccaccttttttcttaaa
atttaatttaattaatatttttgcaaagaactataaatatcaaatgacaa
aaataaatttttgtaaatgataaagtaatttagaaacaatgacatttttt
taaaattatttactttatatcccaatcactgcccctaagttctccctgat
gctgttccctctcctcattacccatccccttctcctttgagaggatgtag
gccccctatcatccccccacactggaagattaaatcttttcagggctagg
cacatcctttcccccgaggccagacaaagcagctcagtaaggagaatata
ttgcatagtcaggcaaaagctttaggaatagctcctgctccagttgttag
gggatccacatgaagactgagttgcacatctgctacatatgtgtgcgggg
ggtggggggggtggg
gaattcttcccttgtttatagaagtggttgagagatcttgaaagtgaaaa
gctgaggctacagtgagcagaactgtgcccttggacacaggtttcatctc
tgaacactgaggtagcatttcttgtatagtcttccatacactaggagacc
cttcttttctggccttttcagaaactccagttggataagcacattgccat
ggtcttctagcttccatcttagattcatggtttttctttttatgtctctg
ccagctgttactggatgatgataatcatgatatggtcttttctccctgca
gaacggaagccactggagacctgggagggcctgagtagacatcactaaat
atcccattattaaaacaaatgaacaccctactctaagattaggacagata
tataagctgtatgatatggtcagaagaacagaataaagtatgaatttcta
aagccatggtcatttttactatattacttcaatgtctaagttattcaagt
aagttatatgacactgactgcttaaaagggcatttacatctgaaaaatac
aagtatgaatatagatgaatatatatgagtaaattgatttatgtgttata
gcacattaactaaatatgttatttctagccatataaataaaaaggattta
agtttatatatttagtccttaaagtatctcaattactatttaatgaaaag
aaattctcttttatgtttaataatgtcattctatctacacagaatgattc
tccacctcctagtttctcaatgtttctcttcttcttccactccagttaag
ttctcatagaacgggtagaattcatcgccctttgagcccataatactgaa
agtaaatgagacattctcatttttattttttatgagaaagaatgttgtga
atgttgtattgttttcagatctggggttgctacttggcatgccgaagggg
ccacagttgacctggaaggctcggcattcagccttcgacttgaaagctcg
caaccaattcctgtgtatttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123839273_123840086
seq2: B6Ng01-331H13.b_41_855

seq1  GAATTCTCAAATTTGGATAAGGTTGTAAGTGGATTTTTTTTCTGCAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATTTGGATAAGGTTGTAAGTGGATTTTTTTTCTGCAATAT  50

seq1  ACCTCATAAGCCAGGATGGTGTATTCAAAGAGCAAAAATAAAAATGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATAAGCCAGGATGGTGTATTCAAAGAGCAAAAATAAAAATGGTCA  100

seq1  AGAATGTTATACATTAGGGGATCCTATAAACACTGTCCTTTAGTGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTATACATTAGGGGATCCTATAAACACTGTCCTTTAGTGAGGAG  150

seq1  GAGACAAAACCTTAGCAAAATAGAAACTCATCAACATTAGGACTTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAACCTTAGCAAAATAGAAACTCATCAACATTAGGACTTCAAAA  200

seq1  ACAAGGAAATAAATTTCTCCAAATTAAAAATAGGAAAGATCGTCATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAATAAATTTCTCCAAATTAAAAATAGGAAAGATCGTCATTAAA  250

seq1  ATATATATAACAAAAAATATAAGTTACTGCCAAAGAAAACAATTTCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAACAAAAAATATAAGTTACTGCCAAAGAAAACAATTTCAACA  300

seq1  AATACAAAGCCGTGTAACACTGTAGTAGACACAGGTAAACAACTTATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGCCGTGTAACACTGTAGTAGACACAGGTAAACAACTTATGTC  350

seq1  AAAGGAGTCATCAAAGATTGGTTATTGAAGTTACCACCTTTTTTCTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTCATCAAAGATTGGTTATTGAAGTTACCACCTTTTTTCTTAAA  400

seq1  ATTTAATTTAATTAATATTTTTGCAAAGAACTATAAATATCAAATGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTAATTAATATTTTTGCAAAGAACTATAAATATCAAATGACAA  450

seq1  AAATAAATTTTTGTAAATGATAAAGTAATTTAGAAACAATGACATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTTTGTAAATGATAAAGTAATTTAGAAACAATGACATTTTTT  500

seq1  TAAAATTATTTACTTTATATCCCAATCACTGCCCCTAAGTTCTCCCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATTTACTTTATATCCCAATCACTGCCCCTAAGTTCTCCCTGAT  550

seq1  GCTGTTCCCTCTCCTCATTACCCATCCCCTTCTCCTTTGAGAGGATGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCCTCTCCTCATTACCCATCCCCTTCTCCTTTGAGAGGATGTAG  600

seq1  GCCCCCTATCATCCCCCCACACTGGAAGATTAAATCTTTTCAGGGCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTATCATCCCCCCACACTGGAAGATTAAATCTTTTCAGGGCTAGG  650

seq1  CACATCCTTTCCCCCGAGGCCAGACAAAGCAGCTCAGTAAGGAGAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTTCCCCCGAGGCCAGACAAAGCAGCTCAGTAAGGAGAATATA  700

seq1  TTGCATAGTCAGGCAAAAGCTTTAGGAATAGCTCCTGCTCCAGTTGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGTCAGGCAAAAGCTTTAGGAATAGCTCCTGCTCCAGTTGTTAG  750

seq1  GGGATCCACATGAAGACTGAGTTGCACATCTGCTACATATGTGTGCGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCACATGAAGACTGAGTTGCACATCTGCTACATATGTGTGCGGGG  800

seq1  GGT-GGGGGGGTGGG  814
      ||| |||||||||||
seq2  GGTGGGGGGGGTGGG  815

seq1: chr2_123998658_123999677
seq2: B6Ng01-331H13.g_65_1087 (reverse)

seq1  CAGAAAT-CACAGGAATT-GCTGCGAAGCTTTCAAGTGGA--GCTGGAAT  46
      ||||||| |||||||||| | |||| ||||||||||| ||  ||| ||||
seq2  CAGAAATACACAGGAATTGGTTGCG-AGCTTTCAAGTCGAAGGCT-GAAT  48

seq1  GCCGAGCCTACCAGGGTCAACTGTGGCCCCCTCGGCATGCCAAGTAGCAA  96
      ||||||||| ||| |||||||||||||||| |||||||||||||||||||
seq2  GCCGAGCCTTCCA-GGTCAACTGTGGCCCCTTCGGCATGCCAAGTAGCAA  97

seq1  -CCCAGATCTGAAAACAATACAACATTCACAACATTCTTTCTCATAAAAA  145
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGATCTGAAAACAATACAACATTCACAACATTCTTTCTCATAAAAA  147

seq1  --TAAAATGAGAATGTCTCATTTAACTTTCAGTATTATGGGCTCAAAGGG  193
         |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAAAAATGAGAATGTCTCATTT-ACTTTCAGTATTATGGGCTCAAAGGG  196

seq1  CGATGACTTCTACCCGTTCTATGAGAACTTAACTGGAGTGGAAGAAGAAG  243
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAATTCTACCCGTTCTATGAGAACTTAACTGGAGTGGAAGAAGAAG  246

seq1  AGAAACATTGAGAAACTAGGAGGTGGAGAATCATTCTGTGTAGATAGAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATTGAGAAACTAGGAGGTGGAGAATCATTCTGTGTAGATAGAAT  296

seq1  GACATTATTAAACATAAAAGAGAATTTCTTTTCATTAAATAGTAATTGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTAAACATAAAAGAGAATTTCTTTTCATTAAATAGTAATTGAG  346

seq1  ATACTTTAAGGACTAAATATATAAACTTAAATCCTTTTTATTTATATGGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAAGGACTAAATATATAAACTTAAATCCTTTTTATTTATATGGC  396

seq1  TAGAAATAACATATTTAGTTAATGTGCTATAACACATAAATCAATTTACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAACATATTTAGTTAATGTGCTATAACACATAAATCAATTTACT  446

seq1  CATATATATTCATCTATATTCATACTTGTATTTTTCAGATGTAAATGCCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATTCATCTATATTCATACTTGTATTTTTCAGATGTAAATGCCC  496

seq1  TTTTAAGCAGTCAGTGTCATATAACTTACTTGAATAACTTAGACATTGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCAGTCAGTGTCATATAACTTACTTGAATAACTTAGACATTGAA  546

seq1  GTAATATAGTAAAAATGACCATGGCTTTAGAAATTCATACTTTATTCTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATAGTAAAAATGACCATGGCTTTAGAAATTCATACTTTATTCTGT  596

seq1  TCTTCTGACCATATCATACAGCTTATATATCTGTCCTAATCTTAGAGTAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGACCATATCATACAGCTTATATATCTGTCCTAATCTTAGAGTAG  646

seq1  GGTGTTCATTTGTTTTAATAATGGGATATTTAGTGATGTCTACTCAGGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCATTTGTTTTAATAATGGGATATTTAGTGATGTCTACTCAGGCC  696

seq1  CTCCCAGGTCTCCAGTGGCTTCCGTTCTGCAGGGAGAAAAGACCATATCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGTCTCCAGTGGCTTCCGTTCTGCAGGGAGAAAAGACCATATCA  746

seq1  TGATTATCATCATCCAGTAACAGCTGGCAGAGACATAAAAAGAAAAACCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATCATCATCCAGTAACAGCTGGCAGAGACATAAAAAGAAAAACCA  796

seq1  TGAATCTAAGATGGAAGCTAGAAGACCATGGCAATGTGCTTATCCAACTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTAAGATGGAAGCTAGAAGACCATGGCAATGTGCTTATCCAACTG  846

seq1  GAGTTTCTGAAAAGGCCAGAAAAGAAGGGTCTCCTAGTGTATGGAAGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGAAAAGGCCAGAAAAGAAGGGTCTCCTAGTGTATGGAAGACT  896

seq1  ATACAAGAAATGCTACCTCAGTGTTCAGAGATGAAACCTGTGTCCAAGGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAAATGCTACCTCAGTGTTCAGAGATGAAACCTGTGTCCAAGGG  946

seq1  CACAGTTCTGCTCACTGTAGCCTCAGCTTTTCACTTTCAAGATCTCTCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCTGCTCACTGTAGCCTCAGCTTTTCACTTTCAAGATCTCTCAA  996

seq1  CCACTTCTATAAACAAGGGAAGAATTC  1020
      |||||||||||||||||||||||||||
seq2  CCACTTCTATAAACAAGGGAAGAATTC  1023