BAC Information

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BAC

Clone NameB6Ng01-331N20
Chromosome9 (Build37)2 (Build37)
Map Location 107,598,470 - 107,599,38694,104,974 - 94,105,053
singlet/doubletsingletsinglet
Overlap geneSema3f
Upstream geneRad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1
Downstream geneRbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331N20.bB6Ng01-331N20.g
ACCGA118124GA118125
length916674
definitionB6Ng01-331N20.b B6Ng01-331N20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,598,470 - 107,599,386)(94,104,974 - 94,105,053)
sequence
gaattcatcagaggcagcctacataagcgaaggcagagctgggtagttct
ccctccagggtctagagagagccacgtgtcagggtctagccttgctaact
cacagctggagtgctaataccactcatgctagatgtcccgagaaaatgca
aatcaaaagccccatgactgtcccacatccctagctgcagacaggaagac
agtgctgctcaaaattaggaagtagaactagctgcctgacctgccctaac
ctgtgtaccgcggggcaaaggatctggaggcttttacccacctcccaaga
agcctggttcaaagtggaaggggagctgaagcaggaatccatagctggca
cctgcaggatcagcagatactactgccttcgatccttctgggcccagtac
tctgaaagcataggttctcaatccgtgggctgaatgaccctttcacagga
gtcgcctaataccatctgcatgtcagatgtttaagtgatggtctataacc
atggcaaaattagttatgaagtagcaacaaaaataattttatggctaagg
gtcaccccgacacgaggagctatatatactaaggggtggcaactaagaag
gttgagaaccactgccttcaagggactttaaccaaaaagttccaggggcc
tgagacggtatcagtccacatgtcctgattcagacccagcttggtcatac
cttcagaccagggctgacttctgctcagtgtgtgacagccgggctcaagc
ctgaatagataggtttttgagcttgtcaggggagggtgggggcctgggtg
ctgcttcctggggagagccccacacccctgctctcacccaagctgggcac
agttgggtggggtggtatccgggaaggattttcccgacatgggtaggaag
agccttttctggcatc
gaattcttttggcttacacttccatattcatagtccatcattaaaggagt
tcagggcaggaaccggaaagcaggagctcatggagaggccctgtttcctt
gcttgttcaacctgctttcttaaagaacccaggaccaccagcccaggggt
aaccccacccataagaggctgagccctcctaatgacaaattaagcaaatg
ccctaaggcttgcctgtagcagtatctcatggagtcactttctcaatgag
gctcccttttctttagcttatgccaaattgacataaaactagtgagcacg
actgactgctttttaacttgacatacacacactatcactgtttagccata
acctaaccttaccttccctttcctttttccttccctttttcccttccttt
cctctttccctttccctttctcccttcccccttcccccttctttcccctt
cttttcccttctttccccttctttctttccccttcttttctttccccttc
ttttcccttctttcccctttctccttctttcccctttccccttcttttcc
cttctttttcctttcccttcttttcccttttccctttttttcccttttcc
cttttcccttttttcccttttttcccttttcctctcctctcctctcctcc
cttcccctcccctctcccctaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107598470_107599386
seq2: B6Ng01-331N20.b_48_963

seq1  GAATTCATCAGAGGCAGCCTACATAAGCGAAGGCAGAGCTGGGTAGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAGGCAGCCTACATAAGCGAAGGCAGAGCTGGGTAGTTCT  50

seq1  CCCTCCAGGGTCTAGAGAGAGCCACGTGTCAGGGTCTAGCCTTGCTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGGGTCTAGAGAGAGCCACGTGTCAGGGTCTAGCCTTGCTAACT  100

seq1  CACAGCTGGAGTGCTAATACCACTCATGCTAGATGTCCCGAGAAAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGGAGTGCTAATACCACTCATGCTAGATGTCCCGAGAAAATGCA  150

seq1  AATCAAAAGCCCCATGACTGTCCCACATCCCTAGCTGCAGACAGGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGCCCCATGACTGTCCCACATCCCTAGCTGCAGACAGGAAGAC  200

seq1  AGTGCTGCTCAAAATTAGGAAGTAGAACTAGCTGCCTGACCTGCCCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCTCAAAATTAGGAAGTAGAACTAGCTGCCTGACCTGCCCTAAC  250

seq1  CTGTGTACCGCGGGGCAAAGGATCTGGAGGCTTTTACCCACCTCCCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACCGCGGGGCAAAGGATCTGGAGGCTTTTACCCACCTCCCAAGA  300

seq1  AGCCTGGTTCAAAGTGGAAGGGGAGCTGAAGCAGGAATCCATAGCTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTTCAAAGTGGAAGGGGAGCTGAAGCAGGAATCCATAGCTGGCA  350

seq1  CCTGCAGGATCAGCAGATACTACTGCCTTCGATCCTTCTGGGCCCAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGATCAGCAGATACTACTGCCTTCGATCCTTCTGGGCCCAGTAC  400

seq1  TCTGAAAGCATAGGTTCTCAATCCGTGGGCTGAATGACCCTTTCACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGCATAGGTTCTCAATCCGTGGGCTGAATGACCCTTTCACAGGA  450

seq1  GTCGCCTAATACCATCTGCATGTCAGATGTTTAAGTGATGGTCTATAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCCTAATACCATCTGCATGTCAGATGTTTAAGTGATGGTCTATAACC  500

seq1  ATGGCAAAATTAGTTATGAAGTAGCAACAAAAATAATTTTATGGCTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAATTAGTTATGAAGTAGCAACAAAAATAATTTTATGGCTAAGG  550

seq1  GTCACCCCGACACGAGGAGCTATATATACTAAGGGGTGGCAACTAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCGACACGAGGAGCTATATATACTAAGGGGTGGCAACTAAGAAG  600

seq1  GTTGAGAACCACTGCCTTCAAGGGACTTTAACCAAAAAGTTCCAGGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAACCACTGCCTTCAAGGGACTTTAACCAAAAAGTTCCAGGGGCC  650

seq1  TGAGACGGTATCAGTCCACATGTCCTGATTCAGACCCAGCTTGGTCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACGGTATCAGTCCACATGTCCTGATTCAGACCCAGCTTGGTCATAC  700

seq1  CTTCAGACCAGGGCTGACTTCTGCTCAGTGTGTGACAGCCGGGCTCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACCAGGGCTGACTTCTGCTCAGTGTGTGACAGCCGGGCTCAAGC  750

seq1  CTGAATAGATAGGTTTTTGAGCTTGTCAGGGGAGGGTGGGGGCCTGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGATAGGTTTTTGAGCTTGTCAGGGGAGGGTGGGGGCCTGGGTG  800

seq1  CTGCTTCCTGGGGAGAGCCCCACACCCCTGCTCTCACCCAAGCTGGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTGGGGAGAGCCCCACACCCCTGCTCTCACCCAAGCTGGGCAC  850

seq1  AGGTTGGGTGGGGTGGTATCCGGGAAGGATTTTCCCGTCATGGGAAGGAA  900
      | ||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  A-GTTGGGTGGGGTGGTATCCGGGAAGGATTTTCCCGACATGGGTAGGAA  899

seq1  GAGCCTTTTCTGGCATC  917
      |||||||||||||||||
seq2  GAGCCTTTTCTGGCATC  916

seq1: chr2_94104974_94105053
seq2: B6Ng01-331N20.g_700_742 (reverse)

seq1  GGGTAGGGGAGATGCTGAAAAAGGGAGGGGAGGGAAGAAGGGAGGGGGGA  50
                                ||| |||| ||| |||||||    
seq2  --------------------------GGGTAGGGGAGAGGGGAGGG----  20

seq1  GAGAGAAGGAGGGAGGAGAGGGGAGGAGAG  80
             | |||||||||||| ||||||||
seq2  -------GAAGGGAGGAGAGGAGAGGAGAG  43