BAC Information

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BAC

Clone NameB6Ng01-332B09
Chromosome2 (Build37)
Map Location 85,474,535 - 85,607,221
singlet/doubletdoublet
Overlap geneOlfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1
Downstream geneOlfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332B09.bB6Ng01-332B09.g
ACCGA118288GA118289
length6311,102
definitionB6Ng01-332B09.b B6Ng01-332B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,474,535 - 85,475,165)(85,606,110 - 85,607,221)
sequence
gaattctctttgtgtgagacctaaaatgtggctgtaaactttatgttaaa
gagcactgaagtacgaatcagaggccacatgatgaatctggtaatgaagt
ttttattctgtttgaaaagtcaagatagtcctaaatagttttatactctg
tctctttttgtgatgtggtaatgctagtaaaatatagatgtagattgaga
agaaatgcaaatatatactagaagataacttagatgaatatttatatgaa
ggtttgattatttttcataatattatttggaatatttgggaatttcacat
cgtgtgtgaaatcatacttcccagtcctcccagatctaccctctaccttg
tgaccttcccccccccaaaaaaaaagaagaaaaagaaagaaggggggaag
gagaaggaggaggagaaggaggagaaggaggaggatcaccacaacaaaac
caacaacaaagtctaatttgtgttgcccatatactcactggagcatggtc
aaacctccactggtcagtcccttaaagaagagagtccttgctcaccctca
tccctgccagaagctatcaattatagagagccacccttaagctttttttt
ccacaatgtttaagagttcttttcagggttt
gaattcctcatggttttgcagctcagggaaattacaagcaggacaattaa
tcaacagtctgttggtgatgttggtttaatattatttaatgagataaaga
aagatagtctatggggtatattcccattgtattcaattgtaatctctaca
cattctgtattgttttagtgaattcaaataaatgcatataattatttgca
tatttgagcatatatttgtgtgggcatcttcatttatacatggagatatt
tgaaaatttataaactcatgtccttaggaatacctacaacaggatataga
taagcaaattcttccaaatcaatggccatttttttaatcttgttctatgt
cccaagagatttagaaatgagagtgttaactgctaggtgttgtgtcactc
tgttttcttgctcatcctctcttcccctctctccttcttcctagttccag
aaacattattgtcttttaatcagaacaactgcatggctacagtacttata
tatcttacccaaacctttataatttgaaaaagcttctagttttttttttt
cctttatgaaaacatccacccacccatcttactctttctggaaatatcaa
tccattcgtgctattttttttaagcattaacccttctttattataaacaa
tttccatctttccatctgtataatattttttttatttcttaataccatga
gacatagtagtattaaatgaatttacaatctattgtgagaattctctccc
ttgtggaaggaggactaaggagtgtctatccactcttcatgtgatcccaa
tgattaaaaaaaaataaaagttcaatttcaaagttcatactggagaacta
tgagtttggattagagacaattggtgcaaagttactgatgggagtgtagg
tgacccagaagcagctacaatgaaaagcttttactcagcctgcatgatgg
tattttatagtttcataaatagatctttaaaaaaaacataggccagacta
aaataaaacttgaaaatcccatttatctgtttggtatattctttctggag
tagactcacttcccgtaccagtttttctagtgtcatagttctttcataga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85474535_85475165
seq2: B6Ng01-332B09.b_46_676

seq1  GAATTCTCTTTGTGTGAGACCTAAAATGTGGCTGTAAACTTTATGTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGTGTGAGACCTAAAATGTGGCTGTAAACTTTATGTTAAA  50

seq1  GAGCACTGAAGTACGAATCAGAGGCCACATGATGAATCTGGTAATGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGAAGTACGAATCAGAGGCCACATGATGAATCTGGTAATGAAGT  100

seq1  TTTTATTCTGTTTGAAAAGTCAAGATAGTCCTAAATAGTTTTATACTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTGTTTGAAAAGTCAAGATAGTCCTAAATAGTTTTATACTCTG  150

seq1  TCTCTTTTTGTGATGTGGTAATGCTAGTAAAATATAGATGTAGATTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTGTGATGTGGTAATGCTAGTAAAATATAGATGTAGATTGAGA  200

seq1  AGAAATGCAAATATATACTAGAAGATAACTTAGATGAATATTTATATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCAAATATATACTAGAAGATAACTTAGATGAATATTTATATGAA  250

seq1  GGTTTGATTATTTTTCATAATATTATTTGGAATATTTGGGAATTTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATTATTTTTCATAATATTATTTGGAATATTTGGGAATTTCACAT  300

seq1  CGTGTGTGAAATCATACTTCCCAGTCCTCCCAGATCTACCCTCTACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGAAATCATACTTCCCAGTCCTCCCAGATCTACCCTCTACCTTG  350

seq1  TGACCTTCCCCCCCCCAAAAAAAAAGAAGAAAAAGAAAGAAGGGGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCCCCCCCCCAAAAAAAAAGAAGAAAAAGAAAGAAGGGGGGAAG  400

seq1  GAGAAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGATAACAACAACAAAAC  450
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  GAGAAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGATCACCACAACAAAAC  450

seq1  CAACAACAAAGTCTAATTTGTGTTGCCCATATACTCACTGGAGCATGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAGTCTAATTTGTGTTGCCCATATACTCACTGGAGCATGGTC  500

seq1  AAACCTCCACTGGTCAGTCCCTTAAAGAAGAGAGTCCTTGCTCACCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCACTGGTCAGTCCCTTAAAGAAGAGAGTCCTTGCTCACCCTCA  550

seq1  TCCCTGCCAGAAGCCATCAATTATAGAGAGCCACACTTAAGCATTTTTTT  600
      |||||||||||||| ||||||||||||||||||| ||||||| |||||||
seq2  TCCCTGCCAGAAGCTATCAATTATAGAGAGCCACCCTTAAGCTTTTTTTT  600

seq1  CCACAATTTTTAAGAGTTCTTTTCAGGGTTT  631
      ||||||| |||||||||||||||||||||||
seq2  CCACAATGTTTAAGAGTTCTTTTCAGGGTTT  631

seq1: chr2_85606110_85607221
seq2: B6Ng01-332B09.g_68_1169 (reverse)

seq1  TCTCTATACAAAGAACTATGGACAACTTAGAAAAACTGGTAACGGGGAAA  50
      |||||||  |||||||||| ||||   ||||||||||||| |||||  ||
seq2  TCTCTAT-GAAAGAACTAT-GACA--CTAGAAAAACTGGT-ACGGG--AA  43

seq1  GTGAGTCTACTCCAGAAAGAATATACCAAACAGATAAATGGGATTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTACTCCAGAAAGAATATACCAAACAGATAAATGGGATTTTCAA  93

seq1  GGTTTTTATTTTAGTCTGGCCTATGTTTTTTTTTAAAGATCTATTTATGA  150
      |  |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  G--TTTTATTTTAGTCTGGCCTATG-TTTTTTTTAAAGATCTATTTATGA  140

seq1  AACTATAAAATACCATCATGCAGGCTGAGTAAAAGCTTTTCATTGTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAAATACCATCATGCAGGCTGAGTAAAAGCTTTTCATTGTAGCT  190

seq1  GCTTCTGGGTCACCTACACTCCCATCAGTAACTTTGCACCAATTGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGGTCACCTACACTCCCATCAGTAACTTTGCACCAATTGTCTCT  240

seq1  AATCCAAACTCATAGTTCTCCAGTATGAACTTTGAAATTGAACTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAACTCATAGTTCTCCAGTATGAACTTTGAAATTGAACTTTTATT  290

seq1  TTTTTTTAATCATTGGGATCACATGAAGAGTGGATAGACACTCCTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATCATTGGGATCACATGAAGAGTGGATAGACACTCCTTAGTC  340

seq1  CTCCTTCCACAAGGGAGAGAATTCTCACAATAGATTGTAAATTCATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCACAAGGGAGAGAATTCTCACAATAGATTGTAAATTCATTTAA  390

seq1  TACTACTATGTCTCATGGTATTAAGAAATAAAAAAAATATTATACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTATGTCTCATGGTATTAAGAAATAAAAAAAATATTATACAGATG  440

seq1  GAAAGATGGAAATTGTTTATAATAAAGAAGGGTTAATGCTTAAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGGAAATTGTTTATAATAAAGAAGGGTTAATGCTTAAAAAAAAT  490

seq1  AGCACGAATGGATTGATATTTCCAGAAAGAGTAAGATGGGTGGGTGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAATGGATTGATATTTCCAGAAAGAGTAAGATGGGTGGGTGGATG  540

seq1  TTTTCATAAAGGAAAAAAAAAAACTAGAAGCTTTTTCAAATTATAAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAAGGAAAAAAAAAAACTAGAAGCTTTTTCAAATTATAAAGGT  590

seq1  TTGGGTAAGATATATAAGTACTGTAGCCATGCAGTTGTTCTGATTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAGATATATAAGTACTGTAGCCATGCAGTTGTTCTGATTAAAAG  640

seq1  ACAATAATGTTTCTGGAACTAGGAAGAAGGAGAGAGGGGAAGAGAGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATGTTTCTGGAACTAGGAAGAAGGAGAGAGGGGAAGAGAGGATG  690

seq1  AGCAAGAAAACAGAGTGACACAACACCTAGCAGTTAACACTCTCATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAAACAGAGTGACACAACACCTAGCAGTTAACACTCTCATTTCT  740

seq1  AAATCTCTTGGGACATAGAACAAGATTAAAAAAATGGCCATTGATTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTGGGACATAGAACAAGATTAAAAAAATGGCCATTGATTTGGA  790

seq1  AGAATTTGCTTATCTATATCCTGTTGTAGGTATTCCTAAGGACATGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGCTTATCTATATCCTGTTGTAGGTATTCCTAAGGACATGAGTT  840

seq1  TATAAATTTTCAAATATCTCCATGTATAAATGAAGATGCCCACACAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTTCAAATATCTCCATGTATAAATGAAGATGCCCACACAAATA  890

seq1  TATGCTCAAATATGCAAATAATTATATGCATTTATTTGAATTCACTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCAAATATGCAAATAATTATATGCATTTATTTGAATTCACTAAAA  940

seq1  CAATACAGAATGTGTAGAGATTACAATTGAATACAATGGGAATATACCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGAATGTGTAGAGATTACAATTGAATACAATGGGAATATACCCC  990

seq1  ATAGACTATCTTTCTTTATCTCATTAAATAATATTAAACCAACATCACCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTATCTTTCTTTATCTCATTAAATAATATTAAACCAACATCACCA  1040

seq1  ACAGACTGTTGATTAATTGTCCTGCTTGTAATTTCCCTGAGCTGCAAAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTTGATTAATTGTCCTGCTTGTAATTTCCCTGAGCTGCAAAAC  1090

seq1  CATGAGGAATTC  1112
      ||||||||||||
seq2  CATGAGGAATTC  1102