BAC Information

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BAC

Clone NameB6Ng01-332B20
Chromosome12 (Build37)2 (Build37)
Map Location 21,284,403 - 21,285,533125,571,962 - 125,572,130
singlet/doubletsingletsinglet
Overlap geneItgb1bp1
Upstream geneLOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2
Downstream geneCpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332B20.bB6Ng01-332B20.g
ACCGA118310GA118311
length1,132797
definitionB6Ng01-332B20.b B6Ng01-332B20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,284,403 - 21,285,533)(125,571,962 - 125,572,130)
sequence
gaattctctgctggaaactgctccaacctactgcagtcacttcctgcttg
gtggcccccaagccctgctgccctgcagagtagctacattgactccagag
cagtggaggcagtggtagagactggccttgatctgactctcgctcccctt
tggagagcacaactctttggccgcttaggcagggccagagccccgcagat
cccctcagctatcgttcggaacagagtggcaatatatgggtcattgagat
gggtttaaaggtaagagcacttgttgcccaagtcctacaacatgagttca
atccccatatgcacatggtggaagcctagaattaactcctgccagtgtcc
ctctgacctccacaaaccatataatgtgcctcaatccctcaaataaatgt
tttttaaaagtttttttaaaaaatgttaaatcagggctagggagatggct
cagcagttaagagcattgtgtactcttctagagatcctgagttcaattcc
cagtaatgacatggtggctcacaacaatctatactgggatctgatgccct
cttctggcatgctggcatacatgcagacagagcacttatatacataaaat
acaattttaaaaattgttaaatcagggtgttttaacaagaccactcatag
ctttagtcccacttggtggaatttaaaaatttcagaaatataccaaaaca
ataaaattagaacaaacatggagtggttaagtagtgcaaaaacaggcatt
ataggcaggtagggtgaagactctgggtctggccatgtacactgtgcgga
gccagttaggagaggcatcgtcagtgctctgtgcgtctgtcccaccctgg
cctcttaccttgctctttgtactgatttcactgctctgggaactgctgct
gctgtgtctcttcttgcctttgcgaaacatctttcaccatagctcgatcc
agagaagatgccgcagtggaacaagtggttgtttccagactgtcaagaaa
agcaacatcagctgggtagtggcgcatgccttttactcccagcactcgaa
agacagagcaagcagatctaagtgagttccaggtcaagcatgaatctgca
aggtaggtctagggccaaccaggctacataaa
gaattccaaccatctgggaggttgaggcaggtttcagagtttgaagcagc
cagcttggggagtagcaaagccatcctttaaagaaaatgttaagaatcat
gtgccaggggctagagagatggctcagtggctgagagcactaactgctct
tccagaggttctgagttcaattcccagcaattcccagcacgtggtagctc
acagccatctgtagtgggatctgaggccctcttctggatggtctgaagac
agggccagtgtactcatgtaaataaaataaagttttgttttgttttgttt
cctgacagggtttctctgaatagccttggctgtcctggaactcactctgt
agaccaggctggcctcagaaatctgcttgcctctgtgccccaagtgctgg
ggcattctgattaaaggcatttgccaccactgcccagcataaataaatct
tgtgtcaggagttgtgacacacacctttaattccagtactttggaggcag
aggcaggtaggatctccaggtcagcctggtctacataaagagtaccagga
caatgagcattgcacagaggaaccctgtctcaaaaaaaaaaaaaaaaaaa
aaaaaacaacaaaaaaaaagaagtacagtggggaagtgcttacctttatt
taatcctaatattcaggaggcagaggtatgtctgaagacagcacacatga
agacagtgtactcatatacacaaaataaaataaataattctttttgtttt
tttgttttcgagactgggcttctcttgtatagccctgggctgtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_21284403_21285533
seq2: B6Ng01-332B20.b_45_1176

seq1  GAATTCTCTGCTGGAAACTGCTCCAACCTACTGCAGTCACTTCCTGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTGGAAACTGCTCCAACCTACTGCAGTCACTTCCTGCTTG  50

seq1  GTGGCCCCCAAGCCCTGCTGCCCTGCAGAGTAGCTACATTGACTCCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCCCAAGCCCTGCTGCCCTGCAGAGTAGCTACATTGACTCCAGAG  100

seq1  CAGTGGAGGCAGTGGTAGAGACTGGCCTTGATCTGACTCTCGCTCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGGCAGTGGTAGAGACTGGCCTTGATCTGACTCTCGCTCCCCTT  150

seq1  TGGAGAGCACAACTCTTTGGCCGCTTAGGCAGGGCCAGAGCCCCGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCACAACTCTTTGGCCGCTTAGGCAGGGCCAGAGCCCCGCAGAT  200

seq1  CCCCTCAGCTATCGTTCGGAACAGAGTGGCAATATATGGGTCATTGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGCTATCGTTCGGAACAGAGTGGCAATATATGGGTCATTGAGAT  250

seq1  GGGTTTAAAGGTAAGAGCACTTGTTGCCCAAGTCCTACAACATGAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAAGGTAAGAGCACTTGTTGCCCAAGTCCTACAACATGAGTTCA  300

seq1  ATCCCCATATGCACATGGTGGAAGCCTAGAATTAACTCCTGCCAGTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATATGCACATGGTGGAAGCCTAGAATTAACTCCTGCCAGTGTCC  350

seq1  CTCTGACCTCCACAAACCATATAATGTGCCTCAATCCCTCAAATAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCTCCACAAACCATATAATGTGCCTCAATCCCTCAAATAAATGT  400

seq1  TTTTTAAAAGTTTTTTTAAAAAATGTTAAATCAGGGCTAGGGAGATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGTTTTTTTAAAAAATGTTAAATCAGGGCTAGGGAGATGGCT  450

seq1  CAGCAGTTAAGAGCATTGTGTACTCTTCTAGAGATCCTGAGTTCAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTAAGAGCATTGTGTACTCTTCTAGAGATCCTGAGTTCAATTCC  500

seq1  CAGTAATGACATGGTGGCTCACAACAATCTATACTGGGATCTGATGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATGACATGGTGGCTCACAACAATCTATACTGGGATCTGATGCCCT  550

seq1  CTTCTGGCATGCTGGCATACATGCAGACAGAGCACTTATATACATAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCATGCTGGCATACATGCAGACAGAGCACTTATATACATAAAAT  600

seq1  ACAATTTTAAAAATTGTTAAATCAGGGTGTTTTAACAAGACCACTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTAAAAATTGTTAAATCAGGGTGTTTTAACAAGACCACTCATAG  650

seq1  CTTTAGTCCCACTTGGTGGAATTTAAAAATTTCAGAAATATACCAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCCACTTGGTGGAATTTAAAAATTTCAGAAATATACCAAAACA  700

seq1  ATAAAATTAGAACAAACATGGAGTGGTTAAGTAGTGCAAAAACAGGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAGAACAAACATGGAGTGGTTAAGTAGTGCAAAAACAGGCATT  750

seq1  ATAGGCAGGTAGGGTGAAGACTCTGGGTCTGGCCATGTACACTGTGCGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGGTAGGGTGAAGACTCTGGGTCTGGCCATGTACACTGTGCGGA  800

seq1  GCCAGTTAGGAGAGGCATCGTCAGTGCTCTGTGCGTCTGTCCCACCCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTAGGAGAGGCATCGTCAGTGCTCTGTGCGTCTGTCCCACCCTGG  850

seq1  CCTCTTACCTTGCTCTTTGTACTGATTTCACTGCTCTGGGAACTGCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACCTTGCTCTTTGTACTGATTTCACTGCTCTGGGAACTGCTGCT  900

seq1  GCTGTGTCTCTTCTTGCCTTTGCGAAACATCTTTCACCATAGCTCGATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCTCTTCTTGCCTTTGCGAAACATCTTTCACCATAGCTCGATCC  950

seq1  AGAGAAGATGCCGCAGTGGAACAAGT-GTTGTTTCCAGGACTGTCAAGAA  999
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  AGAGAAGATGCCGCAGTGGAACAAGTGGTTGTTTCCA-GACTGTCAAGAA  999

seq1  AAGCAACATCAGCTGGGTAGTGGCGCATGCC-TTTACTCCCAGCACTCGA  1048
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGCAACATCAGCTGGGTAGTGGCGCATGCCTTTTACTCCCAGCACTCGA  1049

seq1  AAGACAGAGGCAGGCAGATCTTAGTGAGTTCCAGGTC-AGCATG-ATCTG  1096
      |||||||| ||| |||||||| ||||||||||||||| |||||| |||||
seq2  AAGACAGA-GCAAGCAGATCTAAGTGAGTTCCAGGTCAAGCATGAATCTG  1098

seq1  CAGAGTAAGTTCTA-GGCCAACCAGGGCTACATAAA  1131
      || ||  || |||| ||||||||| |||||||||||
seq2  CA-AGGTAGGTCTAGGGCCAACCA-GGCTACATAAA  1132

seq1: chr2_125571962_125572130
seq2: B6Ng01-332B20.g_347_499 (reverse)

seq1  GGGCAGAGGTGGTGCATGCCTTTAAT--------CCCAGCACTTGGGAGG  42
      |||||| |||||   |||||||||||        ||||||||||||  ||
seq2  GGGCAGTGGTGGCAAATGCCTTTAATCAGAATGCCCCAGCACTTGG--GG  48

seq1  CAGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA  92
      ||    |||||||| |  ||||||||      ||||||||||||||||||
seq2  CA----CAGAGGCAAGCAGATTTCTG------AGGCCAGCCTGGTCTACA  88

seq1  GAGTGAGTTAGTTCCAGGACAGCCAGGTCTATTCAGAGAAACCCTGTCTC  142
      |||||    |||||||||||||||| | ||||||||||||||||||||  
seq2  GAGTG----AGTTCCAGGACAGCCAAGGCTATTCAGAGAAACCCTGTCAG  134

seq1  AAAAAAACAAAAAACAAAAAAACAAAA  169
       ||| || | |||||||||        
seq2  GAAACAAAACAAAACAAAA--------  153