BAC Information

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BAC

Clone NameB6Ng01-332F11
Chromosome2 (Build37)
Map Location 167,943,947 - 168,076,216
singlet/doubletdoublet
Overlap geneAdnp, Dpm1, Mocs3, LOC100043908
Upstream geneKcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik, Pard6b
Downstream geneKcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F11.bB6Ng01-332F11.g
ACCGA118471GA118472
length1,208570
definitionB6Ng01-332F11.b B6Ng01-332F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,075,001 - 168,076,216)(167,943,947 - 167,944,523)
sequence
gaattcttgccctgacttccttcaatgatggactgctatgtgtaaaccaa
atgaaccctttccgctccaatttgtttcttggtcatggtgtttcattcgt
agcagcaatgaaaacacaaattaagacgtcttccttgatccgtaactgat
ctgcatgttccccctcctccctctccagtgctccgtatcctaatggacct
ggacagccaatgggtctgaagcgcacctgtggagccagtgcattaagggc
tttccttgtcctctactgccacctgctggtagttttcagagttacaacat
gggacaggtcaggctgcttgtaaatagccagattccatacaccgctttaa
aagtagtaggagctgttttattgcttgtttctgtttttaagagagcatct
cgtgtagtccagttgggcccaaaactcactacataagggaggcagaggca
ggcggacttctgagttcgaggccagcctggtctacaaagtgagttccagg
acagccagggctatacagagaaaccctgtctcgaaaaaccaaaaaaaaaa
aaaaaaaaaaaacaccttggacttccgatcttcctgcctctacctccctt
gtgtgcaccgcacccaactcttggcagctctttgtttttgtgccctgctg
gaggctggggaaagtctggccaccactcacaagcataccacttcctcagt
tggctttctttctaacaggctgggcccacttccatttagaagtccgcccc
aaactagggcctgtgcgagctttacccagctctgagagacctgagacatc
tcttccatgatcacctctggaagctgattttcacctccttacaaaagaca
ctaccaacctgcccgccctgcccctcctaaccccattgtctttcccctta
cttgctctttcctacctgttaccacagcagaacgtgagcccccaccctct
ctgcacctactgaccgtcactctcccacttgagggtagggtttatcaagt
gtccctttctagccaagtatgactgtacaggcctacaatcctagcatgga
acaagtagaaagaatgagattttaagtcttgttttcagctacaaattcaa
attcagccactggctacacaccagaagaaactcagtctcaaaacaactaa
caacaaaccaaccaaccaatcaggcttgagaacatggtgcaggattatgt
gaatcgcc
tcatctgcacaaggctctaagtaccattccagcattctcaaattctctct
ctctctctctctctctctctctctctctctctctcacacacacacacaca
cacacacacacacacacacacacacaccaggagagaaatagctgttaatt
tgaaggtctgactcagctcactgtcagaacacgtacttgcctagcaaact
gcaggcccctccatccagcagtgtaagtggaggagagaagagagaaggct
ccaagtaaagagcatttgctgctcctgcagaggcccgggttctgttccca
gcacccacaatggtgacctacagctgcctgtaacctcagctacaggggtg
tccgataccttcttctggcctccatgacacacagacaagtgagcacacac
aaaagtattttttaaaaataaattaataggctgggtgtggtggtgcgcgc
ctttaaacccagcacttgggaggcagagatggcggatttcagagttcaag
gccagcctggtctacagagagagttccaagatagccaggactacacagag
aaactctgtctcgaaaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_168075001_168076216
seq2: B6Ng01-332F11.b_46_1253 (reverse)

seq1  GGCGAT---CATAACTCCTGCACCATG-TCTCCAGGCCCCTGTTTTTGTT  46
      ||||||   ||||| |||||||||||| |||| ||   |||| ||     
seq2  GGCGATTCACATAA-TCCTGCACCATGTTCTCAAG---CCTGATT-----  41

seq1  TTTGTTTTGTTTTGTTTGTTTGTTTGTT-TTTTGAGACTGGG--TCTTCT  93
            ||| || ||||| ||||| ||| ||||||||||| |  ||||||
seq2  ----GGTTGGTTGGTTTG-TTGTTAGTTGTTTTGAGACTGAGTTTCTTCT  86

seq1  -GTGTGTAGCCCAGGTTGGCCTTGAATTTG-ATTTGTAGCTGAAAAC-AG  140
       |||||||| ||||  ||||  |||||||| |||||||||||||||| ||
seq2  GGTGTGTAG-CCAG--TGGC--TGAATTTGAATTTGTAGCTGAAAACAAG  131

seq1  ACTTAAAATCCTCAT--CTTCTACTTGTCCCATGCTAGGATTGTAGGCCT  188
      ||||||||| |||||   |||||||||| |||||||||||||||||||||
seq2  ACTTAAAAT-CTCATTCTTTCTACTTGTTCCATGCTAGGATTGTAGGCCT  180

seq1  GTACAGTCATACTTGGCTAGAAAGGGACACTTGATAAACCCTACCCTCAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTCATACTTGGCTAGAAAGGGACACTTGATAAACCCTACCCTCAA  230

seq1  GTGGGAGAGTGACGGTCAGTAGGTGCAGAGAGGGTGGGGGCTCACGTTCT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAGTGACGGTCAGTAGGTGCAGAGAGGGTGGGGGCTCACGTTCT  280

seq1  GCTGTGGTAACAGGTAGGAAAGAGCAAGTAAGGGGAAAGACAATGGGGTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTAACAGGTAGGAAAGAGCAAGTAAGGGGAAAGACAATGGGGTT  330

seq1  AGGAGGGGCAGGGCGGGCAGGTTGGTAGTGTCTTTTGTAAGGAGGTGAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCAGGGCGGGCAGGTTGGTAGTGTCTTTTGTAAGGAGGTGAAA  380

seq1  ATCAGCTTCCAGAGGTGATCATGGAAGAGATGTCTCAGGTCTCTCAGAGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTCCAGAGGTGATCATGGAAGAGATGTCTCAGGTCTCTCAGAGC  430

seq1  TGGGTAAAGCTCGCACAGGCCCTAGTTTGGGGCGGACTTCTAAATGGAAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGCTCGCACAGGCCCTAGTTTGGGGCGGACTTCTAAATGGAAG  480

seq1  TGGGCCCAGCCTGTTAGAAAGAAAGCCAACTGAGGAAGTGGTATGCTTGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCAGCCTGTTAGAAAGAAAGCCAACTGAGGAAGTGGTATGCTTGT  530

seq1  GAGTGGTGGCCAGACTTTCCCCAGCCTCCAGCAGGGCACAAAAACAAAGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTGGCCAGACTTTCCCCAGCCTCCAGCAGGGCACAAAAACAAAGA  580

seq1  GCTGCCAAGAGTTGGGTGCGGTGCACACAAGGGAGGTAGAGGCAGGAAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAAGAGTTGGGTGCGGTGCACACAAGGGAGGTAGAGGCAGGAAGA  630

seq1  TCGGAAGTCCAAGGTGTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGTCCAAGGTGTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGA  680

seq1  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  730

seq1  AGGCTGGCCTCGAACTCAGAAGTCCGCCTGCCTCTGCCTCCCTTATGTAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAGTCCGCCTGCCTCTGCCTCCCTTATGTAG  780

seq1  TGAGTTTTGGGCCCAACTGGACTACACGAGATGCTCTCTTAAAAACAGAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGGGCCCAACTGGACTACACGAGATGCTCTCTTAAAAACAGAA  830

seq1  ACAAGCAATAAAACAGCTCCTACTACTTTTAAAGCGGTGTATGGAATCTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAATAAAACAGCTCCTACTACTTTTAAAGCGGTGTATGGAATCTG  880

seq1  GCTATTTACAAGCAGCCTGACCTGTCCCATGTTGTAACTCTGAAAACTAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTACAAGCAGCCTGACCTGTCCCATGTTGTAACTCTGAAAACTAC  930

seq1  CAGCAGGTGGCAGTAGAGGACAAGGAAAGCCCTTAATGCACTGGCTCCAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTGGCAGTAGAGGACAAGGAAAGCCCTTAATGCACTGGCTCCAC  980

seq1  AGGTGCGCTTCAGACCCATTGGCTGTCCAGGTCCATTAGGATACGGAGCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCGCTTCAGACCCATTGGCTGTCCAGGTCCATTAGGATACGGAGCA  1030

seq1  CTGGAGAGGGAGGAGGGGGAACATGCAGATCAGTTACGGATCAAGGAAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGGGAGGAGGGGGAACATGCAGATCAGTTACGGATCAAGGAAGA  1080

seq1  CGTCTTAATTTGTGTTTTCATTGCTGCTACGAATGAAACACCATGACCAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTAATTTGTGTTTTCATTGCTGCTACGAATGAAACACCATGACCAA  1130

seq1  GAAACAAATTGGAGCGGAAAGGGTTCATTTGGTTTACACATAGCAGTCCA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTGGAGCGGAAAGGGTTCATTTGGTTTACACATAGCAGTCCA  1180

seq1  TCATTGAAGGAAGTCAGGGCAAGAATTC  1216
      ||||||||||||||||||||||||||||
seq2  TCATTGAAGGAAGTCAGGGCAAGAATTC  1208

seq1: chr2_167943947_167944523
seq2: B6Ng01-332F11.g_66_641

seq1  GAATTCTCATCTGCACAAGGCTCTAAGTACCATTCCAGCATTCTCAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTGCACAAGGCTCTAAGTACCATTCCAGCATTCTCAAATT  50

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACA  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACA  100

seq1  CACACACACACACACACACACACACACACACACCAGGAGAGAAATAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACCAGGAGAGAAATAGCTG  150

seq1  TTAATTTGAAGGTCTGACTCAGCTCACTGTCAGAACACGTACTTGCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGAAGGTCTGACTCAGCTCACTGTCAGAACACGTACTTGCCTAG  200

seq1  CAAACTGCAGGCCCCTCCATCCAGCAGTGTAAGTGGAGGAGAGAAGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCAGGCCCCTCCATCCAGCAGTGTAAGTGGAGGAGAGAAGAGAG  250

seq1  AAGGCTCCAAGTAAAGAGCATTTGCTGCTCCTGCAGAGGCCCGGGTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCAAGTAAAGAGCATTTGCTGCTCCTGCAGAGGCCCGGGTTCTG  300

seq1  TTCCCAGCACCCACAATGGTGACCTACAGCTGCCTGTAACCTCAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCACCCACAATGGTGACCTACAGCTGCCTGTAACCTCAGCTACA  350

seq1  GGGGTGTCCGATACCTTCTTCTGGCCTCCATGACACACAGACAAGTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTCCGATACCTTCTTCTGGCCTCCATGACACACAGACAAGTGAGC  400

seq1  ACACACAAAAGTATTTTTTAAAAATAAATTAATAGGCTGGGTGTGGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAAGTATTTTTTAAAAATAAATTAATAGGCTGGGTGTGGTGGT  450

seq1  GCACGCCTTTAAACCCAGCACTTGGGAGGCAGAGACAGGCGGATTTCTGA  500
      || ||||||||||||||||||||||||||||||||  |||||||||| ||
seq2  GCGCGCCTTTAAACCCAGCACTTGGGAGGCAGAGA-TGGCGGATTTCAGA  499

seq1  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAGAGCCAGGACTA  550
      |||| ||||||||||||||||||||| |||||||| || |||||||||||
seq2  GTTCAAGGCCAGCCTGGTCTACAGAGAGAGTTCCAAGATAGCCAGGACTA  549

seq1  CACAGAGAAACTCTGTCTCGAAAAACC  577
      |||||||||||||||||||||||||||
seq2  CACAGAGAAACTCTGTCTCGAAAAACC  576