BAC Information

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BAC

Clone NameB6Ng01-332H24
Chromosome2 (Build37)
Map Location 46,847,780 - 46,976,413
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332H24.bB6Ng01-332H24.g
ACCGA118583GA118584
length1,0771,142
definitionB6Ng01-332H24.b B6Ng01-332H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,847,780 - 46,848,849)(46,975,263 - 46,976,413)
sequence
gaattcttttgattatagcatacgtagattttttttatttagtcatgtgg
ataaagatattttattccaagcctgacagtggtaaggatgatatgggtgg
gagaattttctttgaaaatttaccatcgcaggacagtatggaacaggcac
taaaaaagagaggtcctgttatttaatcatcttacttcttgcaaatctgg
acattatccaaggaacaaactttcttagcacctgcacttatcatctatga
aagacaaaatactaatagagaataattctggtactttatcatctagagaa
aattagaaataaaaagcaggcactcttttgtcctttgaagaaggaaagtt
aaaggggagaagagaaagatataatggattaaagacagagagaatgatta
aaagaatgagagaatacatatatagggggggcactttgtaagtacaaaga
actccagtggttctttttcaagctgctaaattctgcttactggacatctt
tccatgacaaacaccagatggaaaaatgagttcagagtcacaagctgaag
atgattttatcataaagtgattgtttcatcttaattacccagaaaagact
agagctctatggtgctttcacaataaggtttgtatggccaaatacagcat
gagtgcacttctgaaagtttacattctaatctctgggaaaaagtaattat
tctattacgataaacacataaaatgcctgcgtaattttaaaactggtcgt
tgaattccacaaatattcaccatgatgatatatcacttgtagtttttttc
tttcatagtgctatttggggaaacctttgttataacacaaatcttctgat
aaacgaagtaagcaaataatgaggaagacaacattgaggttgctctcatg
gtgaagaatgcaaattcttcatttttgtcgtccacagctgctcacaacat
taaaagagaaacatttttaatagttttaagagaaagtagagccaaagatt
catttagtctacagcccttccaatgaccacagcgcttggtccaggctaca
tcaggacacgtctttgagagctatttt

gaattctctaaattcatttaaagtcaaaaaataaaggcaaggcacttata
accaaatttgcactaataattttggattaattaattaattaattaattta
tcaaacaaaaatgagcagaaggcactggattttatggatcatctaagagt
aaatgatcctcttgatgtgaaactcatgaattggttctagcagatgaata
tgttagcaagtagaatatgccctgtacgatatttctgacatcactatggt
tctatttctagcttagttgattaattaattgattcattggaaatatactg
aaagtgtaatgtaaaactactaatactatgtgttaagtataacatataca
tatatattggcatgctttagaaaatctagggagaaataccttctttggca
attattatctctaaagcagacagatgccacatgcaaattaagactgtaca
attacttgataaacagatcaatccaaatgactaggtagagtctcagacat
cccccagagacagtggctaactgtaagttaggaatgagtgtgaagagctc
tttcacacctacacttagagaagtggtgagacagagaatgcccttcctag
gctaaacatttcatagtggataaaagacatctgtattctgtggtttccaa
ctctctcacttctacttgtatgcccaaagcctaaccaatcaaattgcagt
tgaaatcacaaggaataggagatcaattaagtgtgccaggtactgaaagc
tcaaaacacacagtgttgaaggtttgcaaggggtggcagtaaaaactgaa
tgcctatctagcacgggcatacatcatgttattggaaactagaactaaca
aaggtataggtgtacatgggaagaatcagagttcaaaacaagcctgtttc
attctccatgcttttctgcctttcgctggtgtgtgatgattagtttctct
gtgaggactgcaacatatcaggaagcagcattacagagacagagaaatgc
agtgctgctgacagaggatgtagggtggagtacctggcttctgtactttg
gcatcaaggaaatgaagggaagtcataggtctctcgctttcaattggcta
acattggctcttatacctccggaaagactgtaggaggctggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_46847780_46848849
seq2: B6Ng01-332H24.b_47_1123

seq1  GAATTCTTTTGATTATAGCATACGTAGATTTTTTTTATTTAGTCATGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGATTATAGCATACGTAGATTTTTTTTATTTAGTCATGTGG  50

seq1  ATAAAGATATTTTATTCCAAGCCTGACAGTGGTAAGGATGATATGGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATATTTTATTCCAAGCCTGACAGTGGTAAGGATGATATGGGTGG  100

seq1  GAGAATTTTCTTTGAAAATTTACCATCGCAGGACAGTATGGAACAGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTCTTTGAAAATTTACCATCGCAGGACAGTATGGAACAGGCAC  150

seq1  TAAAAAAGAGAGGTCCTGTTATTTAATCATCTTACTTCTTGCAAATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAGAGGTCCTGTTATTTAATCATCTTACTTCTTGCAAATCTGG  200

seq1  ACATTATCCAAGGAACAAACTTTCTTAGCACCTGCACTTATCATCTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCCAAGGAACAAACTTTCTTAGCACCTGCACTTATCATCTATGA  250

seq1  AAGACAAAATACTAATAGAGAATAATTCTGGTACTTTATCATCTAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATACTAATAGAGAATAATTCTGGTACTTTATCATCTAGAGAA  300

seq1  AATTAGAAATAAAAAGCAGGCACTCTTTTGTCCTTTGAAGAAGGAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAATAAAAAGCAGGCACTCTTTTGTCCTTTGAAGAAGGAAAGTT  350

seq1  AAAGGGGAGAAGAGAAAGATATAATGGATTAAAGACAGAGAGAATGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAGAAGAGAAAGATATAATGGATTAAAGACAGAGAGAATGATTA  400

seq1  AAAGAATGAGAGAATACATATATAGGGGGGGCACTTTGTAAGTACAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAGAGAATACATATATAGGGGGGGCACTTTGTAAGTACAAAGA  450

seq1  ACTCCAGTGGTTCTTTTTCAAGCTGCTAAATTCTGCTTACTGGACATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTGGTTCTTTTTCAAGCTGCTAAATTCTGCTTACTGGACATCTT  500

seq1  TCCATGACAAACACCAGATGGAAAAATGAGTTCAGAGTCACAAGCTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACAAACACCAGATGGAAAAATGAGTTCAGAGTCACAAGCTGAAG  550

seq1  ATGATTTTATCATAAAGTGATTGTTTCATCTTAATTACCCAGAAAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTATCATAAAGTGATTGTTTCATCTTAATTACCCAGAAAAGACT  600

seq1  AGAGCTCTATGGTGCTTTCACAATAAGGTTTGTATGGCCAAATACAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTATGGTGCTTTCACAATAAGGTTTGTATGGCCAAATACAGCAT  650

seq1  GAGTGCACTTCTGAAAGTTTACATTCTAATCTCTGGGAAAAAGTAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCACTTCTGAAAGTTTACATTCTAATCTCTGGGAAAAAGTAATTAT  700

seq1  TCTATTACGATAAACACATAAAATGCCTGCGTAATTTTAAAACTGGTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACGATAAACACATAAAATGCCTGCGTAATTTTAAAACTGGTCGT  750

seq1  TGAATTCCACAAATATTCACCATGATGATATATCACTTGTAGTTTTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCACAAATATTCACCATGATGATATATCACTTGTAGTTTTTTTC  800

seq1  TTTCATAGTGCTATTTGGGGAAACC-TTGTAATAACACAAATCTTCTGAT  849
      ||||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TTTCATAGTGCTATTTGGGGAAACCTTTGTTATAACACAAATCTTCTGAT  850

seq1  AAACGAAGTAAGC-AATAATGAGGAAGAC-ACATTGAGG-TGCTCTCATG  896
      ||||||||||||| ||||||||||||||| ||||||||| ||||||||||
seq2  AAACGAAGTAAGCAAATAATGAGGAAGACAACATTGAGGTTGCTCTCATG  900

seq1  GTGAAGAATGCAAATTC-TCATTTTTGTCGTCCAACAGCTGCTCACAACA  945
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  GTGAAGAATGCAAATTCTTCATTTTTGTCGTCC-ACAGCTGCTCACAACA  949

seq1  TTAAAAGAGAAACATTTTTAATAAGTTTTAAGAG-AAGTAGAGCCAAA-A  993
      |||||||||||||||||||||| ||||||||||| ||||||||||||| |
seq2  TTAAAAGAGAAACATTTTTAAT-AGTTTTAAGAGAAAGTAGAGCCAAAGA  998

seq1  TTCAATTTAGTCTACAGCCCTTCCAATGACCACAGCGC-TGGTCCAGGCT  1042
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTC-ATTTAGTCTACAGCCCTTCCAATGACCACAGCGCTTGGTCCAGGCT  1047

seq1  ACATCAGGACACG--CTTGAGAGCTATTTT  1070
      |||||||||||||   ||||||||||||||
seq2  ACATCAGGACACGTCTTTGAGAGCTATTTT  1077


seq1: chr2_46975263_46976413
seq2: B6Ng01-332H24.g_67_1208 (reverse)

seq1  GCCAGCCTCCTACAGTCTTCTCGGGAGTAT-AGAGCCAATGTTAGCCAAT  49
      |||||||||||||||||||  |||  |||| |||||||||||||||||||
seq2  GCCAGCCTCCTACAGTCTTTCCGGAGGTATAAGAGCCAATGTTAGCCAAT  50

seq1  TGAAAGGCGAGAAGAACTAATGACTTCCCTTTCATTTCCTTTGATGCCAA  99
      ||||| ||||| ||| || |||||||||| ||||||||| |||||||| |
seq2  TGAAA-GCGAG-AGACCT-ATGACTTCCC-TTCATTTCC-TTGATGCC-A  94

seq1  AAGTACAGAGGCCAGGTACTCCACCCTACATCCTCTTGTCAGCAGCACTG  149
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTACAGAAGCCAGGTACTCCACCCTACATCCTC-TGTCAGCAGCACTG  143

seq1  CATTTCTTCTGTCTCTGTAATGCTGCTTCCTGATATGTTGCAGTCCTTCA  199
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CATTTC-TCTGTCTCTGTAATGCTGCTTCCTGATATGTTGCAGTCC-TCA  191

seq1  CAGAGGAAACTAATCATCACACACCAGCGAAAGGCAGAAAAGCATGGAGA  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGA-GAAACTAATCATCACACACCAGCGAAAGGCAGAAAAGCATGGAGA  240

seq1  ATGAAACAGGCTTGTTTTGAACTCTGATTCTTCCCATGTACACCTATACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAGGCTTGTTTTGAACTCTGATTCTTCCCATGTACACCTATACC  290

seq1  TTTGTTAGTTCTAGTTTCCAATAACATGATGTATGCCCGTGCTAGATAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTTCTAGTTTCCAATAACATGATGTATGCCCGTGCTAGATAGG  340

seq1  CATTCAGTTTTTACTGCCACCCCTTGCAAACCTTCAACACTGTGTGTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTTTTTACTGCCACCCCTTGCAAACCTTCAACACTGTGTGTTTT  390

seq1  GAGCTTTCAGTACCTGGCACACTTAATTGATCTCCTATTCCTTGTGATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCAGTACCTGGCACACTTAATTGATCTCCTATTCCTTGTGATTT  440

seq1  CAACTGCAATTTGATTGGTTAGGCTTTGGGCATACAAGTAGAAGTGAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAATTTGATTGGTTAGGCTTTGGGCATACAAGTAGAAGTGAGAG  490

seq1  AGTTGGAAACCACAGAATACAGATGTCTTTTATCCACTATGAAATGTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAAACCACAGAATACAGATGTCTTTTATCCACTATGAAATGTTTA  540

seq1  GCCTAGGAAGGGCATTCTCTGTCTCACCACTTCTCTAAGTGTAGGTGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGAAGGGCATTCTCTGTCTCACCACTTCTCTAAGTGTAGGTGTGA  590

seq1  AAGAGCTCTTCACACTCATTCCTAACTTACAGTTAGCCACTGTCTCTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCTTCACACTCATTCCTAACTTACAGTTAGCCACTGTCTCTGGG  640

seq1  GGATGTCTGAGACTCTACCTAGTCATTTGGATTGATCTGTTTATCAAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTGAGACTCTACCTAGTCATTTGGATTGATCTGTTTATCAAGTA  690

seq1  ATTGTACAGTCTTAATTTGCATGTGGCATCTGTCTGCTTTAGAGATAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAGTCTTAATTTGCATGTGGCATCTGTCTGCTTTAGAGATAATA  740

seq1  ATTGCCAAAGAAGGTATTTCTCCCTAGATTTTCTAAAGCATGCCAATATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAAAGAAGGTATTTCTCCCTAGATTTTCTAAAGCATGCCAATATA  790

seq1  TATGTATATGTTATACTTAACACATAGTATTAGTAGTTTTACATTACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATGTTATACTTAACACATAGTATTAGTAGTTTTACATTACACT  840

seq1  TTCAGTATATTTCCAATGAATCAATTAATTAATCAACTAAGCTAGAAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATATTTCCAATGAATCAATTAATTAATCAACTAAGCTAGAAATA  890

seq1  GAACCATAGTGATGTCAGAAATATCGTACAGGGCATATTCTACTTGCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATAGTGATGTCAGAAATATCGTACAGGGCATATTCTACTTGCTAA  940

seq1  CATATTCATCTGCTAGAACCAATTCATGAGTTTCACATCAAGAGGATCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATCTGCTAGAACCAATTCATGAGTTTCACATCAAGAGGATCAT  990

seq1  TTACTCTTAGATGATCCATAAAATCCAGTGCCTTCTGCTCATTTTTGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTAGATGATCCATAAAATCCAGTGCCTTCTGCTCATTTTTGTTT  1040

seq1  GATAAATTAATTAATTAATTAATTAATCCAAAATTATTAGTGCAAATTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTAATTAATTAATTAATTAATCCAAAATTATTAGTGCAAATTTG  1090

seq1  GTTATAAGTGCCTTGCCTTTATTTTTTGACTTTAAATGAATTTAGAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGTGCCTTGCCTTTATTTTTTGACTTTAAATGAATTTAGAGAAT  1140

seq1  TC  1151
      ||
seq2  TC  1142


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