BAC Information

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BAC

Clone NameB6Ng01-332J08
Chromosome2 (Build37)
Map Location 131,124,385 - 131,125,561
singlet/doubletsinglet
Overlap geneRnf24
Upstream geneEbf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2
Downstream geneLOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332J08.bB6Ng01-332J08.g
ACCGA118641GA118642
length1,1701,222
definitionB6Ng01-332J08.b B6Ng01-332J08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagtgtacaaacacgtctatgaaacctgaggctcagcatttca
taaaccttttttgagggagttatatctagtaaataagccccatagggcta
aacgacaagactaaagtgccattcctccaccttcctggacatgtcctcag
acagaggcaatggccccaagccgtcacattctccaccacagcctggaagg
agaggcatggacggcgctgagggttcaaccacatgagtcccttaacactg
gtgaggtcatgatctgagctacagcgtgtctttgaaacagcaggggtagc
ttttcctgatcctgtgaacaaaggaacgaagaatttggatacgtgctgag
ctaactggaataaaagcatcttgaaataatttgggttctaaagctgaact
tgaaaactgataggtcctgttaatcttatttaaaaaacctttacctggca
ttttaggtccctacctctaagattaagttaaatactttgatggtcccatt
taagcaattttttaaaaataaaaatttatttttatgtgtatgagtgtttg
cttgcatgtacatgtttgcacctggtacactcagatgccagatctgtaac
tgaagttacagattgaagctgagggtcacaaggtgggttctatgagctga
acctgggtcatcggaagagcggccagtgctctgagccactgaacaatctc
accagctcctcaggaggttcttatcagggaagattaaccaggctagagtc
gatgaagtgccaaaggggcgagtctcctccttacccactggctgcagctt
acgctgcagggaagcaggtgagtaggggagaccttgggtggtggatgctg
gagagcaaggtacaggtatgctttctccctcactggctgcctgaaggaga
acttttaccttagaaggggagagggcaaaaagagttgggtgtgggaaaat
tctatacaaagtatttgcttctatgtctcatttgcagaatgactgttagc
cctggggacttaagagatctctactacatgctttcctgcttcaaagcaca
ggcactaactaaggagagggagaagatgcagctgttccaggcatctggag
agtactgattagactgggggcagcttttgccatcctggagatgtaaggga
agcaccttgtgctgttttat
gaattctcagctcctccaggatacacgctgcatatctgtatgcatgttgc
tgtgcttgctgccatgacaatcatggactgaacctctgaacctgtaagcc
agccccatttaatgttttcctttttaagagttgctgtggtaatggtgtct
cttcacagcaatagaaaccctaagacactcaggctgcttgcttatagaac
ctaggaccaccagccccgggatagtatcacccacaatggactgggccctt
ccccatcaatcactaattaaggaaatctcctacagctggattttatggaa
acattttctgagttgaggttgcctccttttagatgactctagcttgtatc
aagttgacataaaactagccagacatggtgtacacttttaattacaacct
tggagaggcaaatcccatggtactggcatttccaaaatgctgctgtcttc
cactgtaacttggctttaaaatagcctctcataggctttcttcatggtgg
taagcctcaactcctttgcatgaccccttcaatcctgggccatcaattgc
aactgaggctgcaccttcaccaatgaccttccatgacctctcacagtgcc
gagcctcagctgctctacgtaaccccttcatgccttcaaaactagtacca
cctgggtagctcttacacattaccaagtcccactgcagcatgaggtacaa
ccttggctatctctggaacacagcctctttgtgctctcaggaaacacttc
ccagaagatttcacctcaatgatgctggtctcttcttaatcaccaccaat
ttcttagctccagctaaccagcatcaataggcccagtaatgcaaaggttt
cactttagtagttctggttaatcacagatgattcttcagccccagctaac
caaaaccacggaatcttcacaatcaaaatagcaatggccctgaaagagtc
tttaattttccctctgaaatttcacaagccaggcctcatctctgcactgt
tctcaacattatctcaagctccaacacaacatcccacagagctcttaaca
ccgatgatcttctagcccaaagtctaaagtccttccacagttcctcccaa
aacattgtcaaggcttgtcaagatacccacttatggctgtacaattgctt
agtcaagattctattcctgccaaactctaagaagtcagaccatggaaccc
aagcaaggtcaggaaaagcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_131124385_131125561
seq2: B6Ng01-332J08.b_50_1219

seq1  GAATTCTTAGTGTACAAACACGTCTATGAAACCTGAGGCTCAGCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTGTACAAACACGTCTATGAAACCTGAGGCTCAGCATTTCA  50

seq1  TAAACCTTTTTTGAGGGAGTTATATCTAGTAAATAAGCCCCATAGGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTTTTTGAGGGAGTTATATCTAGTAAATAAGCCCCATAGGGCTA  100

seq1  AACGACAAGACTAAAGTGCCATTCCTCCACCTTCCTGGACATGTCCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACAAGACTAAAGTGCCATTCCTCCACCTTCCTGGACATGTCCTCAG  150

seq1  ACAGAGGCAATGGCCCCAAGCCGTCACATTCTCCACCACAGCCTGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAATGGCCCCAAGCCGTCACATTCTCCACCACAGCCTGGAAGG  200

seq1  AGAGGCATGGACGGCGCTGAGGGTTCAACCACATGAGTCCCTTAACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCATGGACGGCGCTGAGGGTTCAACCACATGAGTCCCTTAACACTG  250

seq1  GTGAGGTCATGATCTGAGCTACAGCGTGTCTTTGAAACAGCAGGGGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCATGATCTGAGCTACAGCGTGTCTTTGAAACAGCAGGGGTAGC  300

seq1  TTTTCCTGATCCTGTGAACAAAGGAACGAAGAATTTGGATACGTGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGATCCTGTGAACAAAGGAACGAAGAATTTGGATACGTGCTGAG  350

seq1  CTAACTGGAATAAAAGCATCTTGAAATAATTTGGGTTCTAAAGCTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGAATAAAAGCATCTTGAAATAATTTGGGTTCTAAAGCTGAACT  400

seq1  TGAAAACTGATAGGTCCTGTTAATCTTATTTAAAAAACCTTTACCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACTGATAGGTCCTGTTAATCTTATTTAAAAAACCTTTACCTGGCA  450

seq1  TTTTAGGTCCCTACCTCTAAGATTAAGTTAAATACTTTGATGGTCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTCCCTACCTCTAAGATTAAGTTAAATACTTTGATGGTCCCATT  500

seq1  TAAGCAATTTTTTAAAAATAAAAATTTATTTTTATGTGTATGAGTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAATTTTTTAAAAATAAAAATTTATTTTTATGTGTATGAGTGTTTG  550

seq1  CTTGCATGTACATGTTTGCACCTGGTACACTCAGATGCCAGATCTGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGTACATGTTTGCACCTGGTACACTCAGATGCCAGATCTGTAAC  600

seq1  TGAAGTTACAGATTGAAGCTGAGGGTCACAAGGTGGGTTCTATGAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTACAGATTGAAGCTGAGGGTCACAAGGTGGGTTCTATGAGCTGA  650

seq1  ACCTGGGTCATCGGAAGAGCGGCCAGTGCTCTGAGCCACTGAACAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTCATCGGAAGAGCGGCCAGTGCTCTGAGCCACTGAACAATCTC  700

seq1  ACCAGCTCCTCAGGAGGTTCTTATCAGGGAAGATTAACCAGGCTAGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCTCAGGAGGTTCTTATCAGGGAAGATTAACCAGGCTAGAGTC  750

seq1  GATGAAGTGCCAAAGGGGCGAGTCTCCTCCTTACCCACTGGCTGCAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTGCCAAAGGGGCGAGTCTCCTCCTTACCCACTGGCTGCAGCTT  800

seq1  AGGCTGCAGGGAAGCAGGTGAGTAGGGGAGACCTTGGGTGGTGGATGCTG  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCAGGGAAGCAGGTGAGTAGGGGAGACCTTGGGTGGTGGATGCTG  850

seq1  GAGAGCAAGGTACAGGTATGCTTTCTCCCTCACTGGCTGCCTGAAGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAGGTACAGGTATGCTTTCTCCCTCACTGGCTGCCTGAAGGAGA  900

seq1  ACTTTTACCTTAGAAGGGGAGAGGGCAAAAAAGAGTTGGGTGTGGGAAAA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTTTTACCTTAGAAGGGGAGAGGGC-AAAAAGAGTTGGGTGTGGGAAAA  949

seq1  TTCTATACAAAGTATTTGCTTCTATGTCTCATTTGCAGAATGACTGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACAAAGTATTTGCTTCTATGTCTCATTTGCAGAATGACTGTTAG  999

seq1  CCCTGGGGACTTAAGAGATCTCTTACTACATGCTTTCCTGCTTCAAAAGC  1050
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  CCCTGGGGACTTAAGAGATCTC-TACTACATGCTTTCCTGCTTC-AAAGC  1047

seq1  ACAGGCACCAACTAAGGAGAGGGAGGAAGATGGCAGCTGGTCCAGGCACC  1100
      |||||||| ||||||||||||||| |||||| ||||||| |||||||| |
seq2  ACAGGCACTAACTAAGGAGAGGGA-GAAGAT-GCAGCTGTTCCAGGCATC  1095

seq1  TGGAGAG-ACTGATTAGGACTGGGGGGCAAGCTTTTGTCATCCTGGAGAA  1149
      ||||||| |||||||| |||||||||   |||||||| |||||||||| |
seq2  TGGAGAGTACTGATTA-GACTGGGGG--CAGCTTTTGCCATCCTGGAG-A  1141

seq1  GGTAGGGGAAGCAGC-TGTGCTGTTTTAT  1177
       ||| |||||||| | |||||||||||||
seq2  TGTAAGGGAAGCACCTTGTGCTGTTTTAT  1170