BAC Information

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BAC

Clone NameB6Ng01-332M16
Chromosome2 (Build37)
Map Location 61,045,175 - 61,155,496
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332M16.bB6Ng01-332M16.g
ACCGA118794GA118795
length1,1731,139
definitionB6Ng01-332M16.b B6Ng01-332M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,045,175 - 61,046,356)(61,154,343 - 61,155,496)
sequence
gaattcttcacctctcgttttgtaatcacatcccaacattcccacacatg
cacgtgttatttcagagttctagaagagatacctcaagagtaacagaagt
cagtaccaggacacctcaggaagtcccagaagagcagcagccgattgcat
tactcaacacatacttactagcattattagaggctcaatgatgagagggt
gggatttttgtcttaaagggtgagcatgaatcatggtcattaaaactttc
cctttagtatggaccactggtgaatcatccagagaaaacagtcctgcctc
attcagtttggctctatggggacacacttgccacgctgttagtgcatcat
gccttcctttgttactgaatacttggaaatgcttctctttgtcctaggag
gactcccagcccatagacatatattattatctctctcatccttgggctgc
cttccaaccacttacctcccctgacatcttgtctcaaaggcaaaacaggg
ttgctggacatttcactagaagacggttgataagcactcagtttgtttta
tttggacagcttaaccaatgtgtagtgacggcaactacaatgtaaagcag
gctctccctagacctggagggaattaagcctggtggtagggagggacaga
atctggaaggacactgtgggagtacggagaatctgtaagctttctgtaag
gaaaggtagtcttacaagttaatttatttcaggatttgggggctgttatt
cttctttggaaattactgatttcagcatcttgaaaatctgatgtaaaatg
aaaaaaattgaggaagaagaataatgaagaggcttaagttgccagaccca
aatctagtggttctgactctttttttttttgttgtttgtttgtttttgtt
tgtttttcaagacagggtttctctgtatagccctggctgtcctggaactc
actttgtagaccaggatggccttgaactcagaaatccgcctgcctctgcc
tcctgagagctgggattaaaggcgtggtgccaccacacccggcatgactc
taacttccatgagaaagagaatagttcctagctaaaagaagattacaata
tttttgcctgtgccagcctcagtgctttgatgagcattcagacaattaca
ccctgaaactggctttcaattca
gaattccttgttcactgaacctacaaggaacttatggagcaatggaatta
aaagattaaaccgtcagccacttgtgttaagtctttaaatgccttgagaa
gcagtttacatagcaacggagtctgcagttggagtctgcagcagcctcaa
tggctttcagagagtcttagtcaggtgttgtgagaattctccttaactgt
ttcttccagggcagcagcagacagtgacattcctcttggtacacaccatt
caattttcacttatgggcgtacagatttcagttgggcattgacttcacgg
aaaatattgaaagtgacctcaggtagactggctttggagatcacggtcct
agtcaggtgttgttgcttgagttgtctaatctaatggcttgttaaatctg
gaaagcatttagaagtgtatgccagcttttagaggaacaacaaggcctag
tgaagtggagtgtgatcatgagcaaaggcagacatttgcctggtactttc
tacaggatgcaaaggcgtgtgttcatacattgcttccactcctgagagca
gagggcccgtgggtcctataccaatgtttgtgctatgtgcttttgtaccg
catccctctctctttccagaagaactctcctctgcaatttcttccctctc
atttccattaggcaatcatttagttaatctagtagcacagatttgccttc
agagagccatgagatagttgcctcttacaagacaaagcctaaacccaaca
gcaaagccttcttccatcctcttccagaataattacctccctttgtagaa
aagccattattcaattcctctttttttttttttttaaatttgcctcctac
tgggtgtttgatctcaactccactgaaacccttcctttcaggcccacgtg
tctacactcactggtctccagtctttagcttacttcgtttaccagtagct
cttgacaaaccacatcctccttcttagcatagctgtttcccaggaaacag
tctgacttcccaataatctgcatgtctattcctcagccagtctttaagct
ggatgctcagtcagtcttaggtcagttcctcagaccatgctttcttgatt
cttctaactcagactcggggtacccttagtcttcatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_61045175_61046356
seq2: B6Ng01-332M16.b_50_1222

seq1  GAATTCTTCACCTCTCGTTTTGTAATCACATCCCAACATTCCCACACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACCTCTCGTTTTGTAATCACATCCCAACATTCCCACACATG  50

seq1  CACGTGTTATTTCAGAGTTCTAGAAGAGATACCTCAAGAGTAACAGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTTATTTCAGAGTTCTAGAAGAGATACCTCAAGAGTAACAGAAGT  100

seq1  CAGTACCAGGACACCTCAGGAAGTCCCAGAAGAGCAGCAGCCGATTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAGGACACCTCAGGAAGTCCCAGAAGAGCAGCAGCCGATTGCAT  150

seq1  TACTCAACACATACTTACTAGCATTATTAGAGGCTCAATGATGAGAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACACATACTTACTAGCATTATTAGAGGCTCAATGATGAGAGGGT  200

seq1  GGGATTTTTGTCTTAAAGGGTGAGCATGAATCATGGTCATTAAAACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTGTCTTAAAGGGTGAGCATGAATCATGGTCATTAAAACTTTC  250

seq1  CCTTTAGTATGGACCACTGGTGAATCATCCAGAGAAAACAGTCCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTATGGACCACTGGTGAATCATCCAGAGAAAACAGTCCTGCCTC  300

seq1  ATTCAGTTTGGCTCTATGGGGACACACTTGCCACGCTGTTAGTGCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTGGCTCTATGGGGACACACTTGCCACGCTGTTAGTGCATCAT  350

seq1  GCCTTCCTTTGTTACTGAATACTTGGAAATGCTTCTCTTTGTCCTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTTTGTTACTGAATACTTGGAAATGCTTCTCTTTGTCCTAGGAG  400

seq1  GACTCCCAGCCCATAGACATATATTATTATCTCTCTCATCCTTGGGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCAGCCCATAGACATATATTATTATCTCTCTCATCCTTGGGCTGC  450

seq1  CTTCCAACCACTTACCTCCCCTGACATCTTGTCTCAAAGGCAAAACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACCACTTACCTCCCCTGACATCTTGTCTCAAAGGCAAAACAGGG  500

seq1  TTGCTGGACATTTCACTAGAAGACGGTTGATAAGCACTCAGTTTGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGACATTTCACTAGAAGACGGTTGATAAGCACTCAGTTTGTTTTA  550

seq1  TTTGGACAGCTTAACCAATGTGTAGTGACGGCAACTACAATGTAAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAGCTTAACCAATGTGTAGTGACGGCAACTACAATGTAAAGCAG  600

seq1  GCTCTCCCTAGACCTGGAGGGAATTAAGCCTGGTGGTAGGGAGGGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTAGACCTGGAGGGAATTAAGCCTGGTGGTAGGGAGGGACAGA  650

seq1  ATCTGGAAGGACACTGTGGGAGTACGGAGAATCTGTAAGCTTTCTGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAGGACACTGTGGGAGTACGGAGAATCTGTAAGCTTTCTGTAAG  700

seq1  GAAAGGTAGTCTTACAAGTTAATTTATTTCAGGATTTGGGGGCTGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTAGTCTTACAAGTTAATTTATTTCAGGATTTGGGGGCTGTTATT  750

seq1  CTTCTTTGGAAATTACTGATTTCAGCATCTTGAAAATCTGATGTAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGGAAATTACTGATTTCAGCATCTTGAAAATCTGATGTAAAATG  800

seq1  AAAAAAATTGAGGAAGAAGAATAATGAAGAGGCTTAAGTTGCCAGACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTGAGGAAGAAGAATAATGAAGAGGCTTAAGTTGCCAGACCCA  850

seq1  AATCTAGTGGTTCTGACTCTTTTTTTTTTTGTTGTTTGTTTGTTTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGTGGTTCTGACTCTTTTTTTTTTTGTTGTTTGTTTGTTTTTGTT  900

seq1  TGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  950

seq1  ACTTTGTAGACCAGGATGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGATGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCC  1000

seq1  TCCTGAGAGCTGGGATTAAAGGCGT-GTGCCACCACACCCGGCATGACTC  1049
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTGAGAGCTGGGATTAAAGGCGTGGTGCCACCACACCCGGCATGACTC  1050

seq1  TAACTTTCAATGAGGAAAGAGAATAGTTCCTAGCTTAAAAAAGAAGAATT  1099
      |||| ||| |||| |||||||||||||||||||||   |||||||| |||
seq2  TAAC-TTCCATGA-GAAAGAGAATAGTTCCTAGCT---AAAAGAAG-ATT  1094

seq1  ACAAATATTTTGCCTGTGCCCAGGCTCAGTGCTTTGATGAGCCATTCAAG  1149
      ||||   ||||||||||| |||| ||||||||||||||||| ||||| ||
seq2  ACAATATTTTTGCCTGTG-CCAGCCTCAGTGCTTTGATGAG-CATTC-AG  1141

seq1  ACAAATACAACCTGAAACTGGCTTTTCAATTCA  1182
      |||| |||| |||||||||||| ||||||||||
seq2  ACAATTACACCCTGAAACTGGC-TTTCAATTCA  1173

seq1: chr2_61154343_61155496
seq2: B6Ng01-332M16.g_67_1205 (reverse)

seq1  GGGATGAAGACTAAGGGTTACCCCGAGTTCTGAGGTTAGAAGGAATCAAG  50
      ||||||||||||||||| ||||||||| ||||| ||||||| ||||||||
seq2  GGGATGAAGACTAAGGG-TACCCCGAG-TCTGA-GTTAGAA-GAATCAAG  46

seq1  AGAGCATGTGTCTGGAGAACCTGGAACTTAAGACCTGGAACTGAGGCATT  100
      | |||||| |||| ||| | |||  || ||||| |||  ||||| ||| |
seq2  AAAGCATG-GTCT-GAGGAACTG--ACCTAAGA-CTG--ACTGA-GCA-T  87

seq1  CCAGCTTAAAGACTGGCTGAGGAATAGACATGGCCAGATTATTGGGAAGT  150
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CCAGCTTAAAGACTGGCTGAGGAATAGACATG--CAGATTATTGGGAAGT  135

seq1  CCAGACTGTTTCTGGGGAAACAGCTATGCTAAG-AGGAGGATGTGGTTTT  199
       |||||||||||  ||||||||||||||||||| |||||||||||| |||
seq2  -CAGACTGTTTCCTGGGAAACAGCTATGCTAAGAAGGAGGATGTGG-TTT  183

seq1  GTCAAGAGCTACTGGTAAACGAAGTAAGCTAAAGACTGGAGACCAGTGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGCTACTGGTAAACGAAGTAAGCTAAAGACTGGAGACCAGTGAG  233

seq1  TGTAGACACGTGGGCCTGAAAGGAAGGGTTTCAGTGGAGTTGAGATCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACACGTGGGCCTGAAAGGAAGGGTTTCAGTGGAGTTGAGATCAAA  283

seq1  CACCCAGTAGGAGGCAAATTT-AAAAAAAAAAAAAAGAGGAATTGAATAA  348
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACCCAGTAGGAGGCAAATTTAAAAAAAAAAAAAAAGAGGAATTGAATAA  333

seq1  TGGCTTTTCTACAAAGGGAGGTAATTATTCTGGAAGAGGATGGAAGAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTCTACAAAGGGAGGTAATTATTCTGGAAGAGGATGGAAGAAGG  383

seq1  CTTTGCTGTTGGGTTTAGGCTTTGTCTTGTAAGAGGCAACTATCTCATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTTGGGTTTAGGCTTTGTCTTGTAAGAGGCAACTATCTCATGG  433

seq1  CTCTCTGAAGGCAAATCTGTGCTACTAGATTAACTAAATGATTGCCTAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAAGGCAAATCTGTGCTACTAGATTAACTAAATGATTGCCTAAT  483

seq1  GGAAATGAGAGGGAAGAAATTGCAGAGGAGAGTTCTTCTGGAAAGAGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGAGGGAAGAAATTGCAGAGGAGAGTTCTTCTGGAAAGAGAGA  533

seq1  GGGATGCGGTACAAAAGCACATAGCACAAACATTGGTATAGGACCCACGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCGGTACAAAAGCACATAGCACAAACATTGGTATAGGACCCACGG  583

seq1  GCCCTCTGCTCTCAGGAGTGGAAGCAATGTATGAACACACGCCTTTGCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCTCTCAGGAGTGGAAGCAATGTATGAACACACGCCTTTGCAT  633

seq1  CCTGTAGAAAGTACCAGGCAAATGTCTGCCTTTGCTCATGATCACACTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAAAGTACCAGGCAAATGTCTGCCTTTGCTCATGATCACACTCC  683

seq1  ACTTCACTAGGCCTTGTTGTTCCTCTAAAAGCTGGCATACACTTCTAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTAGGCCTTGTTGTTCCTCTAAAAGCTGGCATACACTTCTAAAT  733

seq1  GCTTTCCAGATTTAACAAGCCATTAGATTAGACAACTCAAGCAACAACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCAGATTTAACAAGCCATTAGATTAGACAACTCAAGCAACAACAC  783

seq1  CTGACTAGGACCGTGATCTCCAAAGCCAGTCTACCTGAGGTCACTTTCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAGGACCGTGATCTCCAAAGCCAGTCTACCTGAGGTCACTTTCAA  833

seq1  TATTTTCCGTGAAGTCAATGCCCAACTGAAATCTGTACGCCCATAAGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCGTGAAGTCAATGCCCAACTGAAATCTGTACGCCCATAAGTGA  883

seq1  AAATTGAATGGTGTGTACCAAGAGGAATGTCACTGTCTGCTGCTGCCCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATGGTGTGTACCAAGAGGAATGTCACTGTCTGCTGCTGCCCTG  933

seq1  GAAGAAACAGTTAAGGAGAATTCTCACAACACCTGACTAAGACTCTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACAGTTAAGGAGAATTCTCACAACACCTGACTAAGACTCTCTGA  983

seq1  AAGCCATTGAGGCTGCTGCAGACTCCAACTGCAGACTCCGTTGCTATGTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGAGGCTGCTGCAGACTCCAACTGCAGACTCCGTTGCTATGTA  1033

seq1  AACTGCTTCTCAAGGCATTTAAAGACTTAACACAAGTGGCTGACGGTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTCTCAAGGCATTTAAAGACTTAACACAAGTGGCTGACGGTTTA  1083

seq1  ATCTTTTAATTCCATTGCTCCATAAGTTCCTTGTAGGTTCAGTGAACAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAATTCCATTGCTCCATAAGTTCCTTGTAGGTTCAGTGAACAAG  1133

seq1  GAATTC  1154
      ||||||
seq2  GAATTC  1139