BAC Information

Click to search

BAC

Clone NameB6Ng01-332P19
Chromosome12 (Build37)2 (Build37)
Map Location 111,121,069 - 111,122,214172,278,816 - 172,279,460
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneWars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987
Downstream geneLOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332P19.bB6Ng01-332P19.g
ACCGA118928GA118929
length1,120951
definitionB6Ng01-332P19.b B6Ng01-332P19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,121,069 - 111,122,214)(172,278,816 - 172,279,460)
sequence
gaattcacagctggccaaaagtcctgttttacctccttcagttgtctttc
ctttcctgctgtatagtaataacaggccatctcggccctttcccatagtg
ataagcaggctttacagaagcgaaggcagctgctagtacctcacaggcct
tatcccaatcttatcccaactgcaggccacagggatctccgtgcattcca
gagaacagattaagggccattatgggacgcctggctccatagtaagttcc
ttttgtctctgcaggggacctgtgtaaattgccactcgggtctgagcact
ggattgactgaaacagaacagttcatttctggtcagaaaaacaaacagag
ccatcaggtctttaggactggctgtcatatcctcacaacccaaagccagg
gaacgggtgccacacactgtgggctgaatcttcccacatcaattaacaga
atcatgacaacccgctcaggcaggcatgcccacgggccgaccatgtagat
aagtccttgtggagactctcctagatgattctagattgagtcaagttgac
aaaaccaaccatcactcagaaaccataagcaaagggagttttaggacata
ggacagagaccataaaggggatttgtaaaagaaaaaaggactttagggga
agtgtgggaaagtccactaaagaaagcatgagcagggggcctgagctgac
agtccaaagtgacaggggctcccttgtttcgacaaatgcaccatcttact
ggggagcatcaagatggaagacaaatcatggagtgctgtaaaggtttaca
acagtatggagagccaggcgtggtggcgcacgcctttagacccagcactt
gggaggcagaggcaggcagatttctgagttcgaggccagtctggtctaca
aagtgagttccaggacagccagggctatacagagaaatcctgtctcgaaa
acaataccacaccaccacaccccacccacaccactcaccccacgagagag
agagagagagagagaagagaagagaagacagagagagagaggcagagcaa
cgttggagaaaatcggacttctaaactaatattttatatttaagcatcag
atggcctagttgatatggct
gaattccagaactctgaaagctaaaggaagaaaggtcagattcatctttg
gttgcagagccagctcaaggacagctggtgttacatgaaacccttgctgg
aaaaattagatagatagatagatagatagatagatagatagatagataga
tagatagatgatagatcagacagacagacagaaagagataaatatagata
gagaaataaaaatagagaaacagatgacaggtaggtagagaaatatagat
gatagatatggtagatcgattgatagattagatagatagatagatagata
gatagataccggagaagcactactgggtgaccctgaaccgactgaaaggt
aggataactcaccatgtgggtgacacgcagtgaagaagctggcggggggt
tgactcttttagatgtcttgctgtggctacctacgtacagagcctgcatc
tcacaaggccttccacttggggtagcctcttgttttaggaatgtggcatc
agggggacagtcttgccatgtgcctatccaacctgtgtctctttcaacag
actcttttggaaatcctgggcataaatgtttggaaaaatctgcatttttg
ctaagggctcatcctataaatcacagttcttgtgaagctgaggcaggagg
acagctgtacagtacagcctgagctgagtgaggtcttgactagaaaacag
aaaaacaaaaaaaaaaccccaaacaggaaaagtgatgttgtctgtggcaa
ccccccagcacttgtggggggactcttgttgggtgcggtcttgagacagg
ctgactgggtccctcacagcatgctgcttcaagcatgggccacctacggc
tgttgataataacacatttgcgacgggacccatctgaatggctttgaagg
atctgtgatctctcaggcccacggcagccttgttcccagaactacctacc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_111121069_111122214
seq2: B6Ng01-332P19.b_49_1168 (reverse)

seq1  AGCCATCTC-ACTAGCCCATACTGATGCTTTAAATATAAATATTTAGTTT  49
      |||||| || ||||| |||| ||||||| |||||||||||   |||| ||
seq2  AGCCATATCAACTAGGCCAT-CTGATGC-TTAAATATAAAATATTAG-TT  47

seq1  TAGAAGTCCTATTTTTCTCCATACTGTTTTCTCTCTCTCTCTCTCTCTCT  99
      ||||||||| | ||||||||| ||   || ||||  |||||||||||| |
seq2  TAGAAGTCCGA-TTTTCTCCA-AC--GTTGCTCTGCCTCTCTCTCTCTGT  93

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  149
      ||   ||||| ||||| ||||||||||||||||||||||       ||| 
seq2  CT---TCTCT-TCTCT-TCTCTCTCTCTCTCTCTCTCTC-------GTG-  130

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGTTTTT  199
      | ||| ||| ||||| ||| | ||||| ||| ||||| |||||   ||||
seq2  GGGTGAGTG-GTGTGGGTG-GGGTGTG-GTG-GTGTG-GTATT--GTTTT  173

seq1  CGAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGATTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGT  223

seq1  AGACCAGACTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAG  273

seq1  TGCTGGGTCTAAAGGCGTGCGCCACCACGCCTGGCTCTCCATACTGTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTCTAAAGGCGTGCGCCACCACGCCTGGCTCTCCATACTGTTGT  323

seq1  AAACCTTTACAGCACTCCATGATTTGTCTTCCATCTTGATGCTCCCCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTACAGCACTCCATGATTTGTCTTCCATCTTGATGCTCCCCAGT  373

seq1  AAGATGGTGCATTTGTCGAAACAAGGGAGCCCCTGTCACTTTGGACTGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTGCATTTGTCGAAACAAGGGAGCCCCTGTCACTTTGGACTGTC  423

seq1  AGCTCAGGCCCCCTGCTCATGCTTTCTTTAGTGGACTTTCCCACACTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCCCCCTGCTCATGCTTTCTTTAGTGGACTTTCCCACACTTCC  473

seq1  CCTAAAGTCCTTTTTTCTTTTACAAATCCCCTTTATGGTCTCTGTCCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTCCTTTTTTCTTTTACAAATCCCCTTTATGGTCTCTGTCCTAT  523

seq1  GTCCTAAAACTCCCTTTGCTTATGGTTTCTGAGTGATGGTTGGTTTTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAACTCCCTTTGCTTATGGTTTCTGAGTGATGGTTGGTTTTGTC  573

seq1  AACTTGACTCAATCTAGAATCATCTAGGAGAGTCTCCACAAGGACTTATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACTCAATCTAGAATCATCTAGGAGAGTCTCCACAAGGACTTATC  623

seq1  TACATGGTCGGCCCGTGGGCATGCCTGCCTGAGCGGGTTGTCATGATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTCGGCCCGTGGGCATGCCTGCCTGAGCGGGTTGTCATGATTCT  673

seq1  GTTAATTGATGTGGGAAGATTCAGCCCACAGTGTGTGGCACCCGTTCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTGATGTGGGAAGATTCAGCCCACAGTGTGTGGCACCCGTTCCCT  723

seq1  GGCTTTGGGTTGTGAGGATATGACAGCCAGTCCTAAAGACCTGATGGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGGTTGTGAGGATATGACAGCCAGTCCTAAAGACCTGATGGCTC  773

seq1  TGTTTGTTTTTCTGACCAGAAATGAACTGTTCTGTTTCAGTCAATCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTCTGACCAGAAATGAACTGTTCTGTTTCAGTCAATCCAGT  823

seq1  GCTCAGACCCGAGTGGCAATTTACACAGGTCCCCTGCAGAGACAAAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACCCGAGTGGCAATTTACACAGGTCCCCTGCAGAGACAAAAGGA  873

seq1  ACTTACTATGGAGCCAGGCGTCCCATAATGGCCCTTAATCTGTTCTCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTATGGAGCCAGGCGTCCCATAATGGCCCTTAATCTGTTCTCTGG  923

seq1  AATGCACGGAGATCCCTGTGGCCTGCAGTTGGGATAAGATTGGGATAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACGGAGATCCCTGTGGCCTGCAGTTGGGATAAGATTGGGATAAGG  973

seq1  CCTGTGAGGTACTAGCAGCTGCCTTCGCTTCTGTAAAGCCTGCTTATCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGGTACTAGCAGCTGCCTTCGCTTCTGTAAAGCCTGCTTATCAC  1023

seq1  TATGGGAAAGGGCCGAGATGGCCTGTTATTACTATACAGCAGGAAAGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAAGGGCCGAGATGGCCTGTTATTACTATACAGCAGGAAAGGAA  1073

seq1  AGACAACTGAAGGAGGTAAAACAGGACTTTTGGCCAGCTGTGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTGAAGGAGGTAAAACAGGACTTTTGGCCAGCTGTGAATTC  1120

seq1: chr2_172278816_172279460
seq2: B6Ng01-332P19.g_376_1018 (reverse)

seq1  TGGTAGGT-GATCTGGGAACAGGGCTTGCAGTGGGCCTGAGAGATCACAG  49
      |||||||| | |||||||||| ||| ||| ||||||||||||||||||||
seq2  TGGTAGGTAGTTCTGGGAACAAGGC-TGCCGTGGGCCTGAGAGATCACAG  49

seq1  AATCCTCCAAAGCCATTCCTGCTGGGTCCCTGTCTGCAAATGTGTTATTT  99
       ||||| |||||||||| | | |||||||| ||| |||||||||||| ||
seq2  -ATCCTTCAAAGCCATT-CAGATGGGTCCC-GTC-GCAAATGTGTTA-TT  94

seq1  ATCAACAGCCGTAGGTGG-CCATGCTTGAAGCAGCATGCTGTGAGGGAAC  148
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ATCAACAGCCGTAGGTGGCCCATGCTTGAAGCAGCATGCTGTGAGGGACC  144

seq1  CAGTCAGCCTGTCTCAAGACCGCA-CCAACCAGAGT-CCCCCACAAGTGC  196
      |||||||||||||||||||||||| ||||| ||||| |||||||||||||
seq2  CAGTCAGCCTGTCTCAAGACCGCACCCAACAAGAGTCCCCCCACAAGTGC  194

seq1  TGGGGGGTTGCCACAGACAACATCACTTTTCCTGTTTGGGGTTTTTTTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTTGCCACAGACAACATCACTTTTCCTGTTTGGGGTTTTTTTTT  244

seq1  TGTTTTTCTGTTTTCTAGTCAAGACCTCACTCAGCTCAGGCTGTACTGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGTTTTCTAGTCAAGACCTCACTCAGCTCAGGCTGTACTGTA  294

seq1  CAGCTGTCCTCCTGCCTCAGCTTCACAAGAACTGTGATTTATAGGATGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCCTCCTGCCTCAGCTTCACAAGAACTGTGATTTATAGGATGAG  344

seq1  CCCTTAGCAAAAATGCAGATTTTTCCAAACATTTATGCCCAGGATTTCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGCAAAAATGCAGATTTTTCCAAACATTTATGCCCAGGATTTCCA  394

seq1  AAAGAGTCTGTTGAAAGAGACACAGGTTGGATAGGCACATGGCAAGACTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTGTTGAAAGAGACACAGGTTGGATAGGCACATGGCAAGACTG  444

seq1  TCCCCCTGATGCCACATTCCTAAAACAAGAGGCTACCCCAAGTGGAAGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGATGCCACATTCCTAAAACAAGAGGCTACCCCAAGTGGAAGGC  494

seq1  CTTGTGAGATGCAGGCTCTGTACGTAGGTAGCCACAGCAAGACATCTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGATGCAGGCTCTGTACGTAGGTAGCCACAGCAAGACATCTAAA  544

seq1  AGAGTCAACCCCCCGCCAGCTTCTTCACTGCGTGTCACCCACATGGTGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAACCCCCCGCCAGCTTCTTCACTGCGTGTCACCCACATGGTGAG  594

seq1  TTATCCTACCTTTCAGTCGGTTCAGGGTCACCCAGTAGTGCTTCTCCGG  645
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTACCTTTCAGTCGGTTCAGGGTCACCCAGTAGTGCTTCTCCGG  643