BAC Information

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BAC

Clone NameB6Ng01-333B24
Chromosome2 (Build37)
Map Location 120,478,528 - 120,599,670
singlet/doubletdoublet
Overlap geneStard9, Cdan1, Ttbk2
Upstream geneNdufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
Downstream geneUbr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333B24.bB6Ng01-333B24.g
ACCGA119026GA119027
length1,0491,170
definitionB6Ng01-333B24.b B6Ng01-333B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,478,528 - 120,479,560)(120,598,508 - 120,599,670)
sequence
gaattcactgtgttacagtgggtgccatgtctgagcctcagccttaaatg
agttcccttctgtccagtaagcacttcagggacttgcctaggttttcttg
tgatagtgaagccaaggcagcgctagacacagggtccagctcccgggact
gctgatcttttacatgctatcctcgtgagagcagtgtgcgtagagacggt
gatatttgaggaaaagggaaggaacgatgagtctaaaggctaggaaggaa
gtgctcatttgtttttgttttgcttttcctttctccacagatgtggtatt
gtgtttaagtaaacactgtgttgaggaaggttttggaagcattgagacta
tgatgcagattctgtgtagccctgcctttgctcacaaccctcatctggct
caagtgatgtattatgaactgtgtggtcaaaaggagcattgccatctgct
gtggtgtaactccatttaaactgtatatgcacgcacgtgtgcacgcgcac
atacacacacacactacatcagtattttaaaataaccttataaaataatg
tgtttctttatgactttttcaggcatacttatgtatacttatgtatctct
ccttcctccctctccctgtgttaccaacattcttttaatattgtctgggt
acttgagatgcatgctaaaatctgagaacggagtaggggggtattgtttt
tcattgttttgttttggagacagggtttctctattttaacagccctggct
attctggaactttctttgtagaccaggctggccttgaattcatagagatc
tgcctttttctggctctcgagtactggaattgaaagtgtatgtcactatc
agccagccaagaactagtgttttataaatttttctatttcattggcaaat
ggggaatgttatacttacagacttgagggaaattgtgctaagcttgaaaa
atagcttgtttctatgagttagtttcttcatagtcctagtttaaaaggta
ctttcagactaaggtggtggtaggtgcacgccttttaatccttagcact
gaattctcttttatttcccaaggaaatgggaagacatgatgacctttggt
ctttattctacatgttggtggagtttgtggttggccaactgccttggaga
aaaataaaggacaaggtaattttgaatcataaggtcaattttgatagggg
aaagaatacaaatttatccttcatcccagcaattgatggtgcataccttt
aatcctagtactcaggaggcagaggcagaatttcttctgatgtgaattgt
agcttttagtttttaattaccagtttattttgtttggaaaactagaaata
ctatgttgatgaagatagtagacccagtttaaagagctcttggggactat
cagttcacgggcataggctccatgttaatgtaagctctgcattatattat
cttccctccccactttgaagcactataagtaaagccattagtgagcactg
attcttgcttagtactttatagcacatttattgcatagcctgtttcaatc
ttgacagtgttaatcgtcagtgtgtaagccatggcttccgagaaaagctg
actttggttcctgttctctgtcccttccaggagcaagtaggctccattaa
ggagagatatgaccacaggctcatgttaaaacacctccctccagaattca
gcacctttcttgaccatatttcctctttggattattttacaaaaccggac
taccaggtaaccgtctttgtgagttgtgtgcattgatttttctttctctt
cgtagttcgtttgcttctcactcattaaaagacttaagggatgaccagaa
ctaagtatagaaaggttccctagagtaatgttccttttaatatagcctag
gagatgtgaaatgaacatgatgctggtgatggtggaatgtgtgcaaacag
gtgagatgagagttcttttggggtgaaatttactcgcttagtcagattat
ttaaggtaccaaaattttttctgtgtttctttgacatgatttactagttt
gtgactcctttggggggagtgtcagatgaacacttctcaggattgtctag
acattgaaacacagaatattacattatgttcattacggaaaaactacagt
aatgcaataggcatggaaatattaatggtgtgagagctaccactgagact
gtataagttgagccttagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_120478528_120479560
seq2: B6Ng01-333B24.b_45_1093

seq1  GAATTCACTGTGTTACAGTGGGTGCCATGTCTGAGCCTCAGCCTTAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTTACAGTGGGTGCCATGTCTGAGCCTCAGCCTTAAATG  50

seq1  AGTTCCCTTCTGTCCAGTAAGCACTTCAGGGACTTGCCTAGGTTTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTTCTGTCCAGTAAGCACTTCAGGGACTTGCCTAGGTTTTCTTG  100

seq1  TGATAGTGAAGCCAAGGCAGCGCTAGACACAGGGTCCAGCTCCCGGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGAAGCCAAGGCAGCGCTAGACACAGGGTCCAGCTCCCGGGACT  150

seq1  GCTGATCTTTTACATGCTATCCTCGTGAGAGCAGTGTGCGTAGAGACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTTTTACATGCTATCCTCGTGAGAGCAGTGTGCGTAGAGACGGT  200

seq1  GATATTTGAGGAAAAGGGAAGGAACGATGAGTCTAAAGGCTAGGAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGAGGAAAAGGGAAGGAACGATGAGTCTAAAGGCTAGGAAGGAA  250

seq1  GTGCTCATTTGTTTTTGTTTTGCTTTTCCTTTCTCCACAGATGTGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATTTGTTTTTGTTTTGCTTTTCCTTTCTCCACAGATGTGGTATT  300

seq1  GTGTTTAAGTAAACACTGTGTTGAGGAAGGTTTTGGAAGCATTGAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAGTAAACACTGTGTTGAGGAAGGTTTTGGAAGCATTGAGACTA  350

seq1  TGATGCAGATTCTGTGTAGCCCTGCCTTTGCTCACAACCCTCATCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGATTCTGTGTAGCCCTGCCTTTGCTCACAACCCTCATCTGGCT  400

seq1  CAAGTGATGTATTATGAACTGTGTGGTCAAAAGGAGCATTGCCATCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGATGTATTATGAACTGTGTGGTCAAAAGGAGCATTGCCATCTGCT  450

seq1  GTGGTGTAACTCCATTTAAACTGTATATGCACGCACGTGTGCACGCGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTAACTCCATTTAAACTGTATATGCACGCACGTGTGCACGCGCAC  500

seq1  ATACACACACACACTACATCAGTATTTTAAAATAACCTTATAAAATAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACTACATCAGTATTTTAAAATAACCTTATAAAATAATG  550

seq1  TGTTTCTTTATGACTTTTTCAGGCATACTTATGTATACTTATGTATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTATGACTTTTTCAGGCATACTTATGTATACTTATGTATCTCT  600

seq1  CCTTCCTCCCTCTCCCTGTGTTACCAACATTCTTTTAATATTGTCTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCTCTCCCTGTGTTACCAACATTCTTTTAATATTGTCTGGGT  650

seq1  ACTTGAGATGCATGCTAAAATCTGAGAACGGAGTAGGGGGGTATTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATGCATGCTAAAATCTGAGAACGGAGTAGGGGGGTATTGTTTT  700

seq1  TCATTGTTTTGTTTTGGAGACAGGGTTTCTCTATTTTAACAGCCCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTTGTTTTGGAGACAGGGTTTCTCTATTTTAACAGCCCTGGCT  750

seq1  ATTCTGGAACTTTCTTTGTAGACCAGGCTGGCCTTGAATTCATAGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAACTTTCTTTGTAGACCAGGCTGGCCTTGAATTCATAGAGATC  800

seq1  TGCCTTTTTCTGGCTCTCGAGTACTGGAATTGAAAGTGTATGTCACTA-C  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCCTTTTTCTGGCTCTCGAGTACTGGAATTGAAAGTGTATGTCACTATC  850

seq1  AGCCAGCCAAGAACTAGTGTTTTATAAA-TTTTCTA-TTCATTGGCAAAT  897
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  AGCCAGCCAAGAACTAGTGTTTTATAAATTTTTCTATTTCATTGGCAAAT  900

seq1  -GGGAATGTTATACTTACAGACTGGAGG--AAATGTGCTAAGC-TGAAAA  943
       |||||||||||||||||||||| ||||  || |||||||||| ||||||
seq2  GGGGAATGTTATACTTACAGACTTGAGGGAAATTGTGCTAAGCTTGAAAA  950

seq1  ATAGCT--GTTCTATGAGTTAGTTTCTTCATAGT-CTAGTTTAAAAAGTA  990
      ||||||   ||||||||||||||||||||||||| ||||||||||| |||
seq2  ATAGCTTGTTTCTATGAGTTAGTTTCTTCATAGTCCTAGTTTAAAAGGTA  1000

seq1  CTTTCAG-CT-AGGT-GTGGTA-GTGCACGCC-TTTAATCC-TAGCACT  1033
      ||||||| || |||| |||||| ||||||||| |||||||| |||||||
seq2  CTTTCAGACTAAGGTGGTGGTAGGTGCACGCCTTTTAATCCTTAGCACT  1049

seq1: chr2_120598508_120599670
seq2: B6Ng01-333B24.g_64_1233 (reverse)

seq1  TCCTAAGGCTTCAACCCTTTAATACAGTTCCTCATGTTGTGGTGACTCTC  50
      ||||||||| |||||    | |||||||  ||||    |||||  |||||
seq2  TCCTAAGGC-TCAAC----TTATACAGT--CTCA----GTGGTAGCTCTC  39

seq1  A-ACCATAAAATTATTTTCATTGCTATTTCATAACTGTAATTTTTCTGTT  99
      | ||||| ||  ||||| |||  ||||| ||| |||||| |||||| || 
seq2  ACACCATTAA--TATTTCCATGCCTATTGCATTACTGTAGTTTTTCCGTA  87

seq1  ATGAAACATAATGTAAATATCTGTGTTTTCCAATGGTCTTAGACAAACCC  149
      ||| ||||||||||||   |||||||||  |||| ||| ||||| || ||
seq2  ATG-AACATAATGTAATATTCTGTGTTT--CAAT-GTC-TAGAC-AATCC  131

seq1  TGAGAAGTGGTCATCTGACACTCCCCC--AAGGGGTCACAAACTAGGTAA  197
      ||||||||| |||||||||||||||||  |||| ||||||||||| ||||
seq2  TGAGAAGTGTTCATCTGACACTCCCCCCAAAGGAGTCACAAACTA-GTAA  180

seq1  ATCATGTC-AAGA---ACAGAAAAA--TTTGTTAC--TTAATAATCTGAC  239
      |||||||| ||||   |||||||||  |||| |||  | |||||||||||
seq2  ATCATGTCAAAGAAACACAGAAAAAATTTTGGTACCTTAAATAATCTGAC  230

seq1  TAATGAAGTAAA-TTCACCC--AAAGGACTCTCATCTCACCTGTTTGCAC  286
      |||   |||||| |||||||  |||| |||||||||||||||||||||||
seq2  TAAGCGAGTAAATTTCACCCCAAAAGAACTCTCATCTCACCTGTTTGCAC  280

seq1  ACATTCCA-CATCACCAGCATCATGTTCATTTCACATCTCCTAGGCTATA  335
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCACCATCACCAGCATCATGTTCATTTCACATCTCCTAGGCTATA  330

seq1  TTAAAA-GAACATTACTCTA-GGAACC-TTCTATACTTAGTTCT-GTCAT  381
      |||||| ||||||||||||| |||||| |||||||||||||||| |||||
seq2  TTAAAAGGAACATTACTCTAGGGAACCTTTCTATACTTAGTTCTGGTCAT  380

seq1  -CCTTAAGTC-TATAATGAGT-AAAAGCAAA-----GACTAAGAGAAAGA  423
       ||||||||| | |||||||| | |||||||      || ||||||||||
seq2  CCCTTAAGTCTTTTAATGAGTGAGAAGCAAACGAACTACGAAGAGAAAGA  430

seq1  AAAATCAATGCACACAACTCACAAAGACGGTTACCTGGTAGTCCGGTTTT  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAATGCACACAACTCACAAAGACGGTTACCTGGTAGTCCGGTTTT  480

seq1  GTAAAATAATCCAAAGAGGAAATATGGTCAAGAAAGGTGCTGAATTCTGG  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAATCCAAAGAGGAAATATGGTCAAGAAAGGTGCTGAATTCTGG  530

seq1  AGGGAGGTGTTTTAACATGAGCCTGTGGTCATATCTCTCCTTAATGGAGC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTGTTTTAACATGAGCCTGTGGTCATATCTCTCCTTAATGGAGC  580

seq1  CTACTTGCTCCTGGAAGGGACAGAGAACAGGAACCAAAGTCAGCTTTTCT  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCTCCTGGAAGGGACAGAGAACAGGAACCAAAGTCAGCTTTTCT  630

seq1  CGGAAGCCATGGCTTACACACTGACGATTAACACTGTCAAGATTGAAACA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCCATGGCTTACACACTGACGATTAACACTGTCAAGATTGAAACA  680

seq1  GGCTATGCAATAAATGTGCTATAAAGTACTAAGCAAGAATCAGTGCTCAC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGCAATAAATGTGCTATAAAGTACTAAGCAAGAATCAGTGCTCAC  730

seq1  TAATGGCTTTACTTATAGTGCTTCAAAGTGGGGAGGGAAGATAATATAAT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTTTACTTATAGTGCTTCAAAGTGGGGAGGGAAGATAATATAAT  780

seq1  GCAGAGCTTACATTAACATGGAGCCTATGCCCGTGAACTGATAGTCCCCA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTACATTAACATGGAGCCTATGCCCGTGAACTGATAGTCCCCA  830

seq1  AGAGCTCTTTAAACTGGGTCTACTATCTTCATCAACATAGTATTTCTAGT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTTTAAACTGGGTCTACTATCTTCATCAACATAGTATTTCTAGT  880

seq1  TTTCCAAACAAAATAAACTGGTAATTAAAAACTAAAAGCTACAATTCACA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAACAAAATAAACTGGTAATTAAAAACTAAAAGCTACAATTCACA  930

seq1  TCAGAAGAAATTCTGCCTCTGCCTCCTGAGTACTAGGATTAAAGGTATGC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAAATTCTGCCTCTGCCTCCTGAGTACTAGGATTAAAGGTATGC  980

seq1  ACCATCAATTGCTGGGATGAAGGATAAATTTGTATTCTTTCCCCTATCAA  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAATTGCTGGGATGAAGGATAAATTTGTATTCTTTCCCCTATCAA  1030

seq1  AATTGACCTTATGATTCAAAATTACCTTGTCCTTTATTTTTCTCCAAGGC  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACCTTATGATTCAAAATTACCTTGTCCTTTATTTTTCTCCAAGGC  1080

seq1  AGTTGGCCAACCACAAACTCCACCAACATGTAGAATAAAGACCAAAGGTC  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCAACCACAAACTCCACCAACATGTAGAATAAAGACCAAAGGTC  1130

seq1  ATCATGTCTTCCCATTTCCTTGGGAAATAAAAGAGAATTC  1163
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCTTCCCATTTCCTTGGGAAATAAAAGAGAATTC  1170