BAC Information

Click to search

BAC

Clone NameB6Ng01-333J02
Chromosome2 (Build37)
Map Location 100,985,396 - 101,174,983
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J02.bB6Ng01-333J02.g
ACCGA119329GA119330
length1,1731,053
definitionB6Ng01-333J02.b B6Ng01-333J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,985,396 - 100,986,348)(101,173,931 - 101,174,983)
sequence
gaattctgatcttgtgactggtataaggtggaatctcagggtcgttttga
tttgcatttccctgatgactaaggatgctgaacatttctttaggtgcttc
ttggccattagagtttcctcagttgagaattctttatctctgtaccccat
tttaatagggttatttgtttctctggagtctaacttcttgagttctttgt
atttattggatatgagccctctatcacatataggattggtaaagatcttt
tcccaataagtaggttgctgttttggccttgatgacagtgtccttagcct
tacagaaacttttcaattttatgagattccatttgtttttagttgttctt
agagtctgggccattggtgttctgttcaggaaattttcccctgtgccaat
gtgttcaaggctctttcccacttcctcttctcttagcttctcttagttct
cttagtttagtgtatctggttttatgtagacctttcatattatattctgg
caagaactctagctgaatctgaccatcgcctacaatcaagtaaggctgaa
ttcagaagtaacaggatatagttacacagaggacctctcaaggcaattca
acattgaggctgtgacatggttattgttcagtgttttctgacatccacaa
aaagaattaagtcagaaaggtgtgaaaataagcaatttcacaagaaaagg
agcattgcagagttcatatgtggttggaagatatcacatctccacagatc
aggaaacagaagaagaaacactagtattcaactggacttctctttctcct
ctcttaacttactcaggatcccagcttttatctaaagatatcactcatat
tcacggtgactcttcccttcacttctcttgaaactcactcagaaaatgaa
cctaaacccatgtctcctacatgactcaaaaggcaggcaaacttggatga
tcaaggtgagttctatggtaaagatcaatgttatcgcgatgattttacat
aaaaattaatgaaaattataaactacccaacaacacctaatgaagaagcc
caatttcttcaaatcagaaatgaaagaattatagttattatcttttgagg
tcttagaataaatatggcagagtatgaccactgtgtgacatgtgtgaact
attctaagaataaataacctttg

gaattcaagtaggctggacaaaattccagggatctgccattttctgtttc
tttaggtctaggattataagcatgaatgaccatgcctggcttaaaaagtg
gattctagggatcaaatttagatcctcatgcttgcaaagtaagcattttc
cccaccgagctctccctcttgccttgaacaatcacttcctggtggagcaa
gtgtgtggtctgagaggaagccgcacagagagggctgacactcttctggg
aagattgacataaaatactctagggtagggagagcctatcgaaggcaggg
ttcagggacagaatgaggagttacagcattgggctatgtcggagcctgtt
aaatttgtgtctgagggatgccgagggagaatgatgagagagtagttaca
tattgaatgtgtgaccttgaaattgagaaagaggtcttggctggctgttc
tcacttgggtaagtattcatgtcaggacatctagatagacacaaagtagc
agaaaacaaagtctcagtcttagaactcagattgtttggtttgtgtaggc
aaatactcagggcactcaggatctttacctgtataatggaacaagaaata
gaatcaaatttagggagctgccatggtgatgaagtcagtgaatacatttc
atttacatggagaaagatcttgaaaccaggcatggctaaaaaccattatt
ttgttattattttagtaaaagttgtattttaagcctatttttaagtgctt
tttgtgtataatttacttgctcttgctaagcaaaacaaagtagatattat
ttctcttggtacaaatgaggaaactaaggcccagaggagataaatcattt
acctaaggagatcaagttagaaaatggagcaaggggagtctgagcaaggg
tctgtttgactcccaagacaaaacagttaatcatttttataaatagtaaa
atctggtcttgtgcgcagtcaagacacgagatttgagctgtagtcatcta
gcagcagcgagatgcatgagtgaatgagtttaagcttaaataatcctggt
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100985396_100986348
seq2: B6Ng01-333J02.b_256_1221

seq1  GGATATGAGCCCTCTATCACATATAGGATTGGTAAAGATCTTTTCCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGAGCCCTCTATCACATATAGGATTGGTAAAGATCTTTTCCCAAT  50

seq1  AAGTAGGTTGCTGTTTTGGCCTTGATGACAGTGTCCTTAGCCTTACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTTGCTGTTTTGGCCTTGATGACAGTGTCCTTAGCCTTACAGAA  100

seq1  ACTTTTCAATTTTATGAGATTCCATTTGTTTTTAGTTGTTCTTAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAATTTTATGAGATTCCATTTGTTTTTAGTTGTTCTTAGAGTCT  150

seq1  GGGCCATTGGTGTTCTGTTCAGGAAATTTTCCCCTGTGCCAATGTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTGGTGTTCTGTTCAGGAAATTTTCCCCTGTGCCAATGTGTTCA  200

seq1  AGGCTCTTTCCCACTTCCTCTTCTCTTAGCTTCTCTTAGTTCTCTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTCCCACTTCCTCTTCTCTTAGCTTCTCTTAGTTCTCTTAGTT  250

seq1  TAGTGTATCTGGTTTTATGTAGACCTTTCATATTATATTCTGGCAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATCTGGTTTTATGTAGACCTTTCATATTATATTCTGGCAAGAAC  300

seq1  TCTAGCTGAATCTGACCATCGCCTACAATCAAGTAAGGCTGAATTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGAATCTGACCATCGCCTACAATCAAGTAAGGCTGAATTCAGAA  350

seq1  GTAACAGGATATAGTTACACAGAGGACCTCTCAAGGCAATTCAACATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGGATATAGTTACACAGAGGACCTCTCAAGGCAATTCAACATTGA  400

seq1  GGCTGTGACATGGTTATTGTTCAGTGTTTTCTGACATCCACAAAAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGACATGGTTATTGTTCAGTGTTTTCTGACATCCACAAAAAGAAT  450

seq1  TAAGTCAGAAAGGTGTGAAAATAAGCAATTTCACAAGAAAAGGAGCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGAAAGGTGTGAAAATAAGCAATTTCACAAGAAAAGGAGCATTG  500

seq1  CAGAGTTCATATGTGGTTGGAAGATATCACATCTCCACAGATCAGGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCATATGTGGTTGGAAGATATCACATCTCCACAGATCAGGAAAC  550

seq1  AGAAGAAGAAACACTAGTATTCAACTGGACTTCTCTTTCTCCTCTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAACACTAGTATTCAACTGGACTTCTCTTTCTCCTCTCTTAA  600

seq1  CTTACTCAGGATCCCAGCTTTTATCTAAAGATATCACTCATATTCACGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAGGATCCCAGCTTTTATCTAAAGATATCACTCATATTCACGGT  650

seq1  GACTCTTCCCTTCACTTCTCTTGAAACTCACTCAGAAAATGAACCTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCCTTCACTTCTCTTGAAACTCACTCAGAAAATGAACCTAAAC  700

seq1  CCATGTCTCCTACATGACTCAAAAGGCAGGCAAACTTGGATGATCAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCCTACATGACTCAAAAGGCAGGCAAACTTGGATGATCAAGGT  750

seq1  GAGTTCTATGGTAAAGATCAATGTTATCGCGATGATTTTACATAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTATGGTAAAGATCAATGTTATCGCGATGATTTTACATAAAAATT  800

seq1  AATGAAAATTATAAACTA-CCAACAACA-CTAATGAAG-AGCCCAATTTC  847
      |||||||||||||||||| ||||||||| ||||||||| |||||||||||
seq2  AATGAAAATTATAAACTACCCAACAACACCTAATGAAGAAGCCCAATTTC  850

seq1  -TCAAATCAGAAATGAAAGAATTATAGTTA-TATC-TTTGAGGTCTAAGA  894
       ||||||||||||||||||||||||||||| |||| |||||||||| |||
seq2  TTCAAATCAGAAATGAAAGAATTATAGTTATTATCTTTTGAGGTCTTAGA  900

seq1  TAAATTAATGCAGAGTATGA-CAC--TGTGACA--TGTAGACTATTCTAA  939
        || ||  ||||||||||| |||  |||||||  |||  ||||||||||
seq2  ATAAATATGGCAGAGTATGACCACTGTGTGACATGTGTGAACTATTCTAA  950

seq1  G-ATAAATAA-CTTTG  953
      | |||||||| |||||
seq2  GAATAAATAACCTTTG  966


seq1: chr2_101173931_101174983
seq2: B6Ng01-333J02.g_65_1117 (reverse)

seq1  TTCA-CAGGATTATTTTAAGCTTAAACTCAT-------TGCATCTCCGGC  42
      |||| |||||||| |||||||||||||||||       ||||||||  ||
seq2  TTCACCAGGATTA-TTTAAGCTTAAACTCATTCACTCATGCATCTC--GC  47

seq1  TTGGCTGCTTAGATGAACTACAGCTCAAATCTCGTGTCTTGACCTGCGCA  92
      |  ||||| |||||| |||||||||||||||||||||||||| |||||||
seq2  T--GCTGC-TAGATG-ACTACAGCTCAAATCTCGTGTCTTGA-CTGCGCA  92

seq1  CAAGACCAGATTTTACTATTTATAAAAATGATTAACTGTTTTGTCTTGGG  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAGATTTTACTATTTATAAAAATGATTAACTGTTTTGTCTTGGG  142

seq1  AGTCAAACAGACCCTTGCTCAGACTCCCCTTGCTCCATTTTCTAACTTGA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACAGACCCTTGCTCAGACTCCCCTTGCTCCATTTTCTAACTTGA  192

seq1  TCTCCTTAGGTAAATGATTTATCTCCTCTGGGCCTTAGTTTCCTCATTTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAGGTAAATGATTTATCTCCTCTGGGCCTTAGTTTCCTCATTTG  242

seq1  TACCAAGAGAAATAATATCTACTTTGTTTTGCTTAGCAAGAGCAAGTAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGAGAAATAATATCTACTTTGTTTTGCTTAGCAAGAGCAAGTAAA  292

seq1  TTATACACAAAAAGCACTTAAAAATAGGCTTAAAATACAACTTTTACTAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACAAAAAGCACTTAAAAATAGGCTTAAAATACAACTTTTACTAA  342

seq1  AATAATAACAAAATAATGGTTTTTAGCCATGCCTGGTTTCAAGATCTTTC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAAAATAATGGTTTTTAGCCATGCCTGGTTTCAAGATCTTTC  392

seq1  TCCATGTAAATGAAATGTATTCACTGACTTCATCACCATGGCAGCTCCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTAAATGAAATGTATTCACTGACTTCATCACCATGGCAGCTCCCT  442

seq1  AAATTTGATTCTATTTCTTGTTCCATTATACAGGTAAAGATCCTGAGTGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATTCTATTTCTTGTTCCATTATACAGGTAAAGATCCTGAGTGC  492

seq1  CCTGAGTATTTGCCTACACAAACCAAACAATCTGAGTTCTAAGACTGAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTATTTGCCTACACAAACCAAACAATCTGAGTTCTAAGACTGAGA  542

seq1  CTTTGTTTTCTGCTACTTTGTGTCTATCTAGATGTCCTGACATGAATACT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTCTGCTACTTTGTGTCTATCTAGATGTCCTGACATGAATACT  592

seq1  TACCCAAGTGAGAACAGCCAGCCAAGACCTCTTTCTCAATTTCAAGGTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGTGAGAACAGCCAGCCAAGACCTCTTTCTCAATTTCAAGGTCA  642

seq1  CACATTCAATATGTAACTACTCTCTCATCATTCTCCCTCGGCATCCCTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAATATGTAACTACTCTCTCATCATTCTCCCTCGGCATCCCTCA  692

seq1  GACACAAATTTAACAGGCTCCGACATAGCCCAATGCTGTAACTCCTCATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATTTAACAGGCTCCGACATAGCCCAATGCTGTAACTCCTCATT  742

seq1  CTGTCCCTGAACCCTGCCTTCGATAGGCTCTCCCTACCCTAGAGTATTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTGAACCCTGCCTTCGATAGGCTCTCCCTACCCTAGAGTATTTT  792

seq1  ATGTCAATCTTCCCAGAAGAGTGTCAGCCCTCTCTGTGCGGCTTCCTCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATCTTCCCAGAAGAGTGTCAGCCCTCTCTGTGCGGCTTCCTCTC  842

seq1  AGACCACACACTTGCTCCACCAGGAAGTGATTGTTCAAGGCAAGAGGGAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACACACTTGCTCCACCAGGAAGTGATTGTTCAAGGCAAGAGGGAG  892

seq1  AGCTCGGTGGGGAAAATGCTTACTTTGCAAGCATGAGGATCTAAATTTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGTGGGGAAAATGCTTACTTTGCAAGCATGAGGATCTAAATTTGA  942

seq1  TCCCTAGAATCCACTTTTTAAGCCAGGCATGGTCATTCATGCTTATAATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGAATCCACTTTTTAAGCCAGGCATGGTCATTCATGCTTATAATC  992

seq1  CTAGACCTAAAGAAACAGAAAATGGCAGATCCCTGGAATTTTGTCCAGCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTAAAGAAACAGAAAATGGCAGATCCCTGGAATTTTGTCCAGCC  1042

seq1  TACTTGAATTC  1053
      |||||||||||
seq2  TACTTGAATTC  1053


| Home | SequenceCutter | Blast | Download |