BAC Information

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BAC

Clone NameB6Ng01-333K14
Chromosome2 (Build37)
Map Location 11,520,313 - 11,521,320
singlet/doubletsinglet
Overlap geneRbm17
Upstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3
Downstream geneIl2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333K14.g
ACCGA119392
length1,009
definitionB6Ng01-333K14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatctgctaaccttctgacctgaatcttgaggcttctctatgtgg
ttgattcttatgaggaagtgaagttgcactgtattggttctcttgggctc
ttcagtgcctttctcagagtactagccacgcttgtaaaaatacttggtag
agaaaatgtacctgtatctgaaaggtgaaggtatggtttcatttgtattt
catttttgaaactacaaattaaattttaaaatgagcaaataagtgattgt
cataaccctactgtgggaagttagggtttatattgtgatttttttttttt
tttatgattcctggatgatatgttgtttgcttaaagcaccgttaaagtcc
agagagctcagacttcctgataagagtgaaagtttgtaccctttaaatac
tgagaatttaaactttcatgacaacctctagtccacacggatggccatgg
catcttagcaacctgagaatttggtgttgctcaccagcttgctgagatat
tctttttttttttttttttttaagttttttgttgttttgtttttctagac
agtttctctgtgtagtcctggctgccctggaactcactctgtagaccagg
ctggcctccaactcagatatctgcctgcctccgcctccccggtgctggga
ttaatggcgtgcaccaccacacccggctgggatattcttgtctataagct
ttaaccttaatctgaacaggttttggatatgcgagaacatagaggtataa
gttaaggagacatgtagaataagcagcatttgtaataaacagtgtcccag
agaaaatggagatgggtatcagagaaggggactgctgaagatggagaaat
cagaagtacatttaggaaacttggcagggtggtgaaatggctcggtgagt
gaaagctgatgaccttgagttttgatccctagaactccatggttgaagag
agagacccatgctcacacagatgtatgcttaccattcatgcatgcataca
tacatattt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11520313_11521320
seq2: B6Ng01-333K14.g_68_1075 (reverse)

seq1  AATATGTATGTATGCATGCATGATTGGGTAAGCATACATCTGTGTGAGGC  50
      ||||||||||||||||||||||| | ||||||||||||||||||||| ||
seq2  AATATGTATGTATGCATGCATGAAT-GGTAAGCATACATCTGTGTGA-GC  48

seq1  CTGGGTCTCTCTCCTTCCACCATGGGGTTCTAGGGATC-AAACTC-AGGT  98
       ||||||||||| |||| ||||||| |||||||||||| |||||| ||||
seq2  ATGGGTCTCTCT-CTTCAACCATGGAGTTCTAGGGATCAAAACTCAAGGT  97

seq1  CATCAGCCTTCACTCACCGAGCCATTTCACCACCCCTGCC-AGTTTCCTA  147
      ||||||| |||||||||||||||||||||||| ||||||| |||||||||
seq2  CATCAGCTTTCACTCACCGAGCCATTTCACCA-CCCTGCCAAGTTTCCTA  146

seq1  AATGTACTTCTGATTTCTCCATCTTCAGCAGTCCCCCTTCTCTGATA-CC  196
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AATGTACTTCTGATTTCTCCATCTTCAGCAGT-CCCCTTCTCTGATACCC  195

seq1  ATCTCCATTTTCTCTGGGACACTG-TTATTACAAATGCTGCTTATTCTAC  245
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCTCCATTTTCTCTGGGACACTGTTTATTACAAATGCTGCTTATTCTAC  245

seq1  ATGTCTCCTTAACTTATACCTCTATGTTCTCGCATATCCAAAACCTGTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCTTAACTTATACCTCTATGTTCTCGCATATCCAAAACCTGTTC  295

seq1  AGATTAAGGTTAAAGCTTATAGACAAGAATATCCCAGCCGGGTGTGGTGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGGTTAAAGCTTATAGACAAGAATATCCCAGCCGGGTGTGGTGG  345

seq1  TGCACGCCATTAATCCCAGCACCGGGGAGGCGGAGGCAGGCAGATATCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCCATTAATCCCAGCACCGGGGAGGCGGAGGCAGGCAGATATCTG  395

seq1  AGTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGGCAGCCAGGACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGGCAGCCAGGACT  445

seq1  ACACAGAGAAACTGTCTAGAAAAACAAAACAACAAAAAACTTAAAAAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACTGTCTAGAAAAACAAAACAACAAAAAACTTAAAAAAAA  495

seq1  AAAAAAAAAAAGAATATCTCAGCAAGCTGGTGAGCAACACCAAATTCTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAATATCTCAGCAAGCTGGTGAGCAACACCAAATTCTCA  545

seq1  GGTTGCTAAGATGCCATGGCCATCCGTGTGGACTAGAGGTTGTCATGAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTAAGATGCCATGGCCATCCGTGTGGACTAGAGGTTGTCATGAAA  595

seq1  GTTTAAATTCTCAGTATTTAAAGGGTACAAACTTTCACTCTTATCAGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATTCTCAGTATTTAAAGGGTACAAACTTTCACTCTTATCAGGAA  645

seq1  GTCTGAGCTCTCTGGACTTTAACGGTGCTTTAAGCAAACAACATATCATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCTCTCTGGACTTTAACGGTGCTTTAAGCAAACAACATATCATC  695

seq1  CAGGAATCATAAAAAAAAAAAAAAATCACAATATAAACCCTAACTTCCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCATAAAAAAAAAAAAAAATCACAATATAAACCCTAACTTCCCA  745

seq1  CAGTAGGGTTATGACAATCACTTATTTGCTCATTTTAAAATTTAATTTGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGTTATGACAATCACTTATTTGCTCATTTTAAAATTTAATTTGT  795

seq1  AGTTTCAAAAATGAAATACAAATGAAACCATACCTTCACCTTTCAGATAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAAAATGAAATACAAATGAAACCATACCTTCACCTTTCAGATAC  845

seq1  AGGTACATTTTCTCTACCAAGTATTTTTACAAGCGTGGCTAGTACTCTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATTTTCTCTACCAAGTATTTTTACAAGCGTGGCTAGTACTCTGA  895

seq1  GAAAGGCACTGAAGAGCCCAAGAGAACCAATACAGTGCAACTTCACTTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCACTGAAGAGCCCAAGAGAACCAATACAGTGCAACTTCACTTCC  945

seq1  TCATAAGAATCAACCACATAGAGAAGCCTCAAGATTCAGGTCAGAAGGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGAATCAACCACATAGAGAAGCCTCAAGATTCAGGTCAGAAGGTT  995

seq1  AGCAGATGAATTC  1008
      |||||||||||||
seq2  AGCAGATGAATTC  1008